Wall clock time and date at job start Mon Mar 30 2020 02:20:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47374 * 2 1 4 4 C 1.52992 * 109.47220 * 120.00509 * 2 1 3 5 5 H 1.09001 * 109.52098 * 300.12089 * 4 2 1 6 6 C 1.53118 * 109.52333 * 179.97438 * 4 2 1 7 7 C 1.53036 * 109.28209 * 182.37694 * 6 4 2 8 8 N 1.46851 * 109.52495 * 59.17327 * 7 6 4 9 9 C 1.46842 * 111.19941 * 298.26173 * 8 7 6 10 10 H 1.09004 * 109.46719 * 301.73963 * 9 8 7 11 11 C 1.50696 * 109.46702 * 181.75547 * 9 8 7 12 12 H 1.07999 * 120.00319 * 240.00475 * 11 9 8 13 13 C 1.37885 * 119.99717 * 59.99858 * 11 9 8 14 14 N 1.31516 * 119.99913 * 180.02562 * 13 11 9 15 15 Si 1.86798 * 119.99766 * 0.02562 * 13 11 9 16 16 H 1.48500 * 109.47353 * 269.99586 * 15 13 11 17 17 H 1.48501 * 109.47293 * 30.00037 * 15 13 11 18 18 H 1.48504 * 109.46680 * 149.99835 * 15 13 11 19 19 C 1.53038 * 109.52306 * 61.73911 * 9 8 7 20 20 H 1.08995 * 109.47215 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.46776 * 299.99963 * 1 2 3 22 22 H 1.08994 * 109.47434 * 59.99299 * 1 2 3 23 23 H 1.09001 * 109.46776 * 240.00037 * 2 1 3 24 24 H 1.08995 * 109.47179 * 180.02562 * 3 2 1 25 25 H 1.09006 * 109.47004 * 300.00171 * 3 2 1 26 26 H 1.08996 * 109.46758 * 60.00016 * 3 2 1 27 27 H 1.08994 * 109.50952 * 62.43122 * 6 4 2 28 28 H 1.09003 * 109.50350 * 302.31125 * 6 4 2 29 29 H 1.09000 * 109.46170 * 299.16127 * 7 6 4 30 30 H 1.08992 * 109.46712 * 179.19336 * 7 6 4 31 31 H 1.00898 * 110.99532 * 62.36200 * 8 7 6 32 32 H 0.97001 * 119.99646 * 179.97438 * 14 13 11 33 33 H 1.08998 * 109.50272 * 60.76460 * 19 9 8 34 34 H 1.08998 * 109.50326 * 180.87954 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 1 1.6754 -0.2094 2.1397 6 6 3.5712 -0.7226 1.2500 7 6 4.0752 -1.4964 2.4703 8 7 3.5668 -2.8733 2.4227 9 6 2.0993 -2.8992 2.4687 10 1 1.7556 -2.4062 3.3781 11 6 1.6218 -4.3285 2.4612 12 1 0.9819 -4.6800 1.6654 13 6 2.0021 -5.1877 3.4705 14 7 1.5859 -6.4352 3.4637 15 14 3.1086 -4.5795 4.8472 16 1 4.5293 -4.7907 4.4703 17 1 2.8665 -3.1321 5.0741 18 1 2.8094 -5.3325 6.0917 19 6 1.5363 -2.1673 1.2483 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8899 23 1 1.8933 -0.5138 -0.8900 24 1 3.1300 1.4424 -0.0005 25 1 1.6767 1.9563 -0.8900 26 1 1.6768 1.9562 0.8900 27 1 3.9360 0.3036 1.2937 28 1 3.9353 -1.2004 0.3404 29 1 3.7224 -1.0102 3.3798 30 1 5.1651 -1.5114 2.4661 31 1 3.9117 -3.3581 1.6078 32 1 1.8537 -7.0396 4.1735 33 1 1.8682 -2.6677 0.3387 34 1 0.4472 -2.1732 1.2908 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259921054.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:37 Heat of formation + Delta-G solvation = -28.961942 kcal Electronic energy + Delta-G solvation = -13286.470090 eV Core-core repulsion = 11217.864810 eV Total energy + Delta-G solvation = -2068.605280 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -38.76665 -35.15104 -32.47493 -30.35203 -29.58501 -27.13438 -25.00806 -23.03023 -21.21423 -19.69465 -19.46446 -16.74340 -15.12614 -14.57745 -14.07260 -13.91785 -13.67004 -13.39286 -13.08958 -12.60653 -12.20069 -12.11959 -11.70436 -11.34155 -11.19770 -10.80106 -10.66325 -10.58890 -10.50689 -10.16855 -9.80045 -9.58397 -9.52390 -8.93314 -8.47151 -7.24017 -5.95714 -4.04466 3.60406 3.64603 3.78637 4.69992 4.95254 5.09537 5.12102 5.18532 5.45044 5.61017 5.69156 5.73938 5.82326 5.88592 5.94743 6.00747 6.02298 6.19514 6.21133 6.31337 6.39906 6.42976 6.49650 6.57212 6.79076 6.82310 6.90472 7.25323 7.75526 8.28514 8.29786 8.73463 9.04656 9.69282 11.13957 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.050611 B = 0.010989 C = 0.009596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.109762 B = 2547.358425 C = 2917.301931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.091 4.091 3 C -0.146 4.146 4 C -0.084 4.084 5 H 0.062 0.938 6 C -0.147 4.147 7 C 0.051 3.949 8 N -0.684 5.684 9 C 0.181 3.819 10 H 0.038 0.962 11 C -0.521 4.521 12 H 0.070 0.930 13 C 0.079 3.921 14 N -0.903 5.903 15 Si 0.934 3.066 16 H -0.280 1.280 17 H -0.273 1.273 18 H -0.319 1.319 19 C -0.127 4.127 20 H 0.062 0.938 21 H 0.051 0.949 22 H 0.046 0.954 23 H 0.064 0.936 24 H 0.054 0.946 25 H 0.047 0.953 26 H 0.051 0.949 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.335 0.665 32 H 0.262 0.738 33 H 0.051 0.949 34 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.197 13.309 -5.057 14.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.110 4.110 3 C -0.203 4.203 4 C -0.103 4.103 5 H 0.081 0.919 6 C -0.186 4.186 7 C -0.079 4.079 8 N -0.315 5.315 9 C 0.074 3.926 10 H 0.056 0.944 11 C -0.559 4.559 12 H 0.088 0.912 13 C -0.125 4.125 14 N -0.541 5.541 15 Si 0.766 3.234 16 H -0.207 1.207 17 H -0.199 1.199 18 H -0.249 1.249 19 C -0.167 4.167 20 H 0.081 0.919 21 H 0.070 0.930 22 H 0.065 0.935 23 H 0.083 0.917 24 H 0.073 0.927 25 H 0.066 0.934 26 H 0.070 0.930 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.153 0.847 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.268 13.040 -4.291 13.914 hybrid contribution 0.365 0.541 -0.243 0.696 sum 2.633 13.580 -4.534 14.557 Atomic orbital electron populations 1.21871 0.95558 1.02219 1.00841 1.21147 0.95608 0.95532 0.98679 1.21880 1.00966 0.96492 1.01009 1.21296 0.94877 0.97283 0.96839 0.91943 1.22323 0.96169 1.00190 0.99917 1.21995 0.98483 0.90954 0.96486 1.61027 1.12518 1.11878 1.46057 1.19646 0.83287 0.96634 0.93058 0.94419 1.20957 1.31049 0.93152 1.10743 0.91223 1.25067 0.94861 0.94363 0.98187 1.69974 1.45133 1.05088 1.33884 0.85893 0.80926 0.78052 0.78501 1.20660 1.19888 1.24881 1.22204 1.00672 0.93056 1.00729 0.91928 0.93005 0.93506 0.91749 0.92674 0.93417 0.93027 0.92635 0.92582 0.92157 0.92399 0.84657 0.92859 0.93013 0.92167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 8.85 37.16 0.33 -1.61 16 2 C -0.09 -1.24 2.51 -90.62 -0.23 -1.47 16 3 C -0.15 -1.70 8.84 37.16 0.33 -1.37 16 4 C -0.08 -1.35 1.84 -90.50 -0.17 -1.52 16 5 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 6 C -0.15 -2.24 4.94 -26.65 -0.13 -2.37 16 7 C 0.05 0.90 6.55 -3.83 -0.03 0.88 16 8 N -0.68 -14.79 4.03 -107.99 -0.44 -15.22 16 9 C 0.18 4.23 1.78 -68.88 -0.12 4.11 16 10 H 0.04 0.94 7.20 -51.93 -0.37 0.57 16 11 C -0.52 -14.70 9.29 -34.44 -0.32 -15.02 16 12 H 0.07 2.12 7.99 -52.49 -0.42 1.71 16 13 C 0.08 2.32 5.47 -17.82 -0.10 2.22 16 14 N -0.90 -28.15 13.96 55.43 0.77 -27.38 16 15 Si 0.93 24.29 26.03 -169.99 -4.42 19.87 16 16 H -0.28 -7.27 7.11 56.52 0.40 -6.87 16 17 H -0.27 -6.97 6.54 56.52 0.37 -6.60 16 18 H -0.32 -8.37 7.11 56.52 0.40 -7.97 16 19 C -0.13 -2.49 4.16 -26.65 -0.11 -2.60 16 20 H 0.06 0.89 6.50 -51.93 -0.34 0.55 16 21 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 22 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 23 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 24 H 0.05 0.62 6.49 -51.93 -0.34 0.29 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 26 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.75 6.57 -51.93 -0.34 0.40 16 28 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 30 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 31 H 0.34 7.11 8.79 -39.29 -0.35 6.77 16 32 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 33 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.06 1.19 6.58 -51.93 -0.34 0.85 16 LS Contribution 258.85 15.07 3.90 3.90 Total: -1.00 -30.01 258.85 -6.62 -36.63 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -5.89 Total: 0.97 kcal Atomic # 6 Polarization: -18.22 SS G_CDS: -0.54 Total: -18.76 kcal Atomic # 7 Polarization: -42.94 SS G_CDS: 0.34 Total: -42.60 kcal Atomic # 14 Polarization: 24.29 SS G_CDS: -4.42 Total: 19.87 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -30.01 -6.62 -36.63 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259921054.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.666 kcal (2) G-P(sol) polarization free energy of solvation -30.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds