Wall clock time and date at job start Mon Mar 30 2020 02:20:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47374 * 2 1 4 4 C 1.52992 * 109.47220 * 120.00509 * 2 1 3 5 5 H 1.09001 * 109.52098 * 300.12089 * 4 2 1 6 6 C 1.53118 * 109.52333 * 179.97438 * 4 2 1 7 7 C 1.53036 * 109.28209 * 182.37694 * 6 4 2 8 8 N 1.46851 * 109.52495 * 59.17327 * 7 6 4 9 9 C 1.46842 * 111.19941 * 298.26173 * 8 7 6 10 10 H 1.09004 * 109.46719 * 301.73963 * 9 8 7 11 11 C 1.50696 * 109.46702 * 181.75547 * 9 8 7 12 12 H 1.07999 * 120.00319 * 240.00475 * 11 9 8 13 13 C 1.37885 * 119.99717 * 59.99858 * 11 9 8 14 14 N 1.31516 * 119.99913 * 180.02562 * 13 11 9 15 15 Si 1.86798 * 119.99766 * 0.02562 * 13 11 9 16 16 H 1.48500 * 109.47353 * 269.99586 * 15 13 11 17 17 H 1.48501 * 109.47293 * 30.00037 * 15 13 11 18 18 H 1.48504 * 109.46680 * 149.99835 * 15 13 11 19 19 C 1.53038 * 109.52306 * 61.73911 * 9 8 7 20 20 H 1.08995 * 109.47215 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.46776 * 299.99963 * 1 2 3 22 22 H 1.08994 * 109.47434 * 59.99299 * 1 2 3 23 23 H 1.09001 * 109.46776 * 240.00037 * 2 1 3 24 24 H 1.08995 * 109.47179 * 180.02562 * 3 2 1 25 25 H 1.09006 * 109.47004 * 300.00171 * 3 2 1 26 26 H 1.08996 * 109.46758 * 60.00016 * 3 2 1 27 27 H 1.08994 * 109.50952 * 62.43122 * 6 4 2 28 28 H 1.09003 * 109.50350 * 302.31125 * 6 4 2 29 29 H 1.09000 * 109.46170 * 299.16127 * 7 6 4 30 30 H 1.08992 * 109.46712 * 179.19336 * 7 6 4 31 31 H 1.00898 * 110.99532 * 62.36200 * 8 7 6 32 32 H 0.97001 * 119.99646 * 179.97438 * 14 13 11 33 33 H 1.08998 * 109.50272 * 60.76460 * 19 9 8 34 34 H 1.08998 * 109.50326 * 180.87954 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 1 1.6754 -0.2094 2.1397 6 6 3.5712 -0.7226 1.2500 7 6 4.0752 -1.4964 2.4703 8 7 3.5668 -2.8733 2.4227 9 6 2.0993 -2.8992 2.4687 10 1 1.7556 -2.4062 3.3781 11 6 1.6218 -4.3285 2.4612 12 1 0.9819 -4.6800 1.6654 13 6 2.0021 -5.1877 3.4705 14 7 1.5859 -6.4352 3.4637 15 14 3.1086 -4.5795 4.8472 16 1 4.5293 -4.7907 4.4703 17 1 2.8665 -3.1321 5.0741 18 1 2.8094 -5.3325 6.0917 19 6 1.5363 -2.1673 1.2483 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8899 23 1 1.8933 -0.5138 -0.8900 24 1 3.1300 1.4424 -0.0005 25 1 1.6767 1.9563 -0.8900 26 1 1.6768 1.9562 0.8900 27 1 3.9360 0.3036 1.2937 28 1 3.9353 -1.2004 0.3404 29 1 3.7224 -1.0102 3.3798 30 1 5.1651 -1.5114 2.4661 31 1 3.9117 -3.3581 1.6078 32 1 1.8537 -7.0396 4.1735 33 1 1.8682 -2.6677 0.3387 34 1 0.4472 -2.1732 1.2908 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259921054.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:37 Heat of formation + Delta-G solvation = -48.384427 kcal Electronic energy + Delta-G solvation = -13287.312312 eV Core-core repulsion = 11217.864810 eV Total energy + Delta-G solvation = -2069.447502 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.20849 -36.53830 -34.54855 -32.07428 -30.96375 -28.28882 -26.84247 -24.45800 -22.72947 -21.34346 -20.72789 -18.82117 -16.81185 -16.03287 -15.71403 -15.47818 -15.00995 -14.91943 -14.52041 -14.25410 -13.78998 -13.20760 -12.98382 -12.92325 -12.69489 -12.46485 -12.28066 -12.01549 -11.81655 -11.62923 -11.43579 -11.25981 -11.17710 -10.76823 -10.70341 -8.90842 -8.23836 -6.36234 1.48887 1.56003 1.70054 2.52731 3.07761 3.74029 3.86067 3.92771 4.07738 4.27172 4.43963 4.53249 4.61026 4.67908 4.71232 4.83291 4.83874 4.99565 5.01936 5.06420 5.13987 5.17660 5.27448 5.29897 5.37420 5.45865 5.55390 5.61834 5.72534 6.16899 6.47830 6.81790 6.88716 7.41113 8.88949 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.050611 B = 0.010989 C = 0.009596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.109762 B = 2547.358425 C = 2917.301931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.088 4.088 3 C -0.141 4.141 4 C -0.079 4.079 5 H 0.059 0.941 6 C -0.138 4.138 7 C 0.049 3.951 8 N -0.699 5.699 9 C 0.187 3.813 10 H 0.025 0.975 11 C -0.523 4.523 12 H 0.030 0.970 13 C 0.024 3.976 14 N -0.951 5.951 15 Si 0.999 3.001 16 H -0.275 1.275 17 H -0.264 1.264 18 H -0.323 1.323 19 C -0.119 4.119 20 H 0.042 0.958 21 H 0.053 0.947 22 H 0.065 0.935 23 H 0.062 0.938 24 H 0.062 0.938 25 H 0.061 0.939 26 H 0.054 0.946 27 H 0.086 0.914 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.081 0.919 31 H 0.336 0.664 32 H 0.264 0.736 33 H 0.042 0.958 34 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.608 16.025 -5.291 17.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.106 4.106 3 C -0.198 4.198 4 C -0.097 4.097 5 H 0.078 0.922 6 C -0.177 4.177 7 C -0.081 4.081 8 N -0.330 5.330 9 C 0.079 3.921 10 H 0.043 0.957 11 C -0.561 4.561 12 H 0.049 0.951 13 C -0.174 4.174 14 N -0.591 5.591 15 Si 0.829 3.171 16 H -0.201 1.201 17 H -0.189 1.189 18 H -0.253 1.253 19 C -0.158 4.158 20 H 0.061 0.939 21 H 0.072 0.928 22 H 0.084 0.916 23 H 0.080 0.920 24 H 0.081 0.919 25 H 0.081 0.919 26 H 0.073 0.927 27 H 0.104 0.896 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.099 0.901 31 H 0.155 0.845 32 H 0.072 0.928 33 H 0.061 0.939 34 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 3.683 15.783 -4.540 16.831 hybrid contribution -0.129 -0.317 -0.238 0.417 sum 3.554 15.466 -4.778 16.573 Atomic orbital electron populations 1.21870 0.95479 1.01273 1.01909 1.21105 0.95717 0.96796 0.97023 1.21833 1.01396 0.94660 1.01943 1.21236 0.95731 0.94552 0.98193 0.92217 1.22238 0.95086 1.01586 0.98782 1.22113 0.99787 0.88640 0.97511 1.60723 1.10905 1.14948 1.46404 1.19382 0.84907 0.93636 0.94151 0.95684 1.21285 1.29950 0.95733 1.09167 0.95139 1.25893 0.96433 0.94361 1.00720 1.70100 1.47285 1.06537 1.35133 0.84853 0.79098 0.77751 0.75377 1.20056 1.18866 1.25333 1.22044 0.99930 0.95438 0.98435 0.93897 0.92798 0.91617 0.91959 0.91911 0.91948 0.92720 0.89602 0.92194 0.92474 0.90078 0.84548 0.92770 0.93883 0.93267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.60 8.85 71.98 0.64 -2.97 16 2 C -0.09 -2.15 2.51 -10.80 -0.03 -2.18 16 3 C -0.14 -2.71 8.84 71.98 0.64 -2.07 16 4 C -0.08 -2.34 1.84 -10.72 -0.02 -2.36 16 5 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 6 C -0.14 -3.71 4.94 30.65 0.15 -3.56 16 7 C 0.05 1.56 6.55 86.32 0.57 2.13 16 8 N -0.70 -29.09 4.03 -495.58 -2.00 -31.09 16 9 C 0.19 8.73 1.78 44.19 0.08 8.81 16 10 H 0.03 1.24 7.20 -2.38 -0.02 1.22 16 11 C -0.52 -30.37 9.29 25.60 0.24 -30.13 16 12 H 0.03 1.95 7.99 -2.91 -0.02 1.93 16 13 C 0.02 1.47 5.47 84.66 0.46 1.93 16 14 N -0.95 -61.00 13.96 21.45 0.30 -60.70 16 15 Si 1.00 50.44 26.03 68.60 1.79 52.22 16 16 H -0.27 -13.52 7.11 99.48 0.71 -12.81 16 17 H -0.26 -12.75 6.54 99.48 0.65 -12.10 16 18 H -0.32 -16.39 7.11 99.48 0.71 -15.68 16 19 C -0.12 -4.64 4.16 30.65 0.13 -4.51 16 20 H 0.04 1.19 6.50 -2.39 -0.02 1.18 16 21 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 22 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 23 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 24 H 0.06 1.12 6.49 -2.39 -0.02 1.10 16 25 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 26 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.09 1.87 6.57 -2.39 -0.02 1.85 16 28 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 31 H 0.34 13.87 8.79 -89.70 -0.79 13.08 16 32 H 0.26 15.94 8.31 -92.71 -0.77 15.17 16 33 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.05 1.98 6.58 -2.39 -0.02 1.97 16 Total: -1.00 -65.35 258.85 3.14 -62.21 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: 0.21 Total: 12.26 kcal Atomic # 6 Polarization: -37.75 SS G_CDS: 2.85 Total: -34.90 kcal Atomic # 7 Polarization: -90.09 SS G_CDS: -1.70 Total: -91.79 kcal Atomic # 14 Polarization: 50.44 SS G_CDS: 1.79 Total: 52.22 kcal Total: -65.35 3.14 -62.21 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259921054.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.821 kcal (2) G-P(sol) polarization free energy of solvation -65.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds