Wall clock time and date at job start Mon Mar 30 2020 02:20:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46810 * 2 1 4 4 C 1.52998 * 109.46777 * 119.99986 * 2 1 3 5 5 H 1.09003 * 109.52309 * 299.86911 * 4 2 1 6 6 C 1.53114 * 109.52570 * 60.00398 * 4 2 1 7 7 C 1.53034 * 109.28174 * 177.55902 * 6 4 2 8 8 N 1.46852 * 109.52122 * 300.82009 * 7 6 4 9 9 C 1.46851 * 111.19757 * 61.74018 * 8 7 6 10 10 H 1.08997 * 109.45918 * 178.25389 * 9 8 7 11 11 C 1.50696 * 109.46100 * 58.27412 * 9 8 7 12 12 H 1.07995 * 120.00332 * 239.97275 * 11 9 8 13 13 C 1.37880 * 119.99983 * 59.98111 * 11 9 8 14 14 N 1.31517 * 120.00210 * 359.97438 * 13 11 9 15 15 Si 1.86800 * 120.00019 * 179.97438 * 13 11 9 16 16 H 1.48503 * 109.46845 * 269.99914 * 15 13 11 17 17 H 1.48503 * 109.47399 * 29.99403 * 15 13 11 18 18 H 1.48498 * 109.47295 * 150.00010 * 15 13 11 19 19 C 1.53033 * 109.51279 * 298.26409 * 9 8 7 20 20 H 1.08998 * 109.47380 * 300.00022 * 1 2 3 21 21 H 1.09006 * 109.46989 * 60.00143 * 1 2 3 22 22 H 1.08998 * 109.47224 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47380 * 239.99978 * 2 1 3 24 24 H 1.08996 * 109.47567 * 299.99257 * 3 2 1 25 25 H 1.08998 * 109.47613 * 60.00142 * 3 2 1 26 26 H 1.09000 * 109.47076 * 179.97438 * 3 2 1 27 27 H 1.08997 * 109.50615 * 57.61157 * 6 4 2 28 28 H 1.09002 * 109.53159 * 297.51633 * 6 4 2 29 29 H 1.08994 * 109.46460 * 180.80218 * 7 6 4 30 30 H 1.09002 * 109.46117 * 60.83141 * 7 6 4 31 31 H 1.00902 * 110.99608 * 297.64266 * 8 7 6 32 32 H 0.97000 * 119.99462 * 359.97438 * 14 13 11 33 33 H 1.08999 * 109.49989 * 179.11863 * 19 9 8 34 34 H 1.09000 * 109.50255 * 299.23419 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 1 1.6789 -0.2067 2.1398 6 6 1.5303 -2.1651 1.2504 7 6 2.0930 -2.8986 2.4700 8 7 3.5605 -2.8787 2.4206 9 6 4.0747 -1.5039 2.4662 10 1 5.1645 -1.5234 2.4593 11 6 3.5925 -0.8289 3.7243 12 1 2.9872 0.0631 3.6605 13 6 3.9243 -1.3502 4.9569 14 7 4.6612 -2.4368 5.0346 15 14 3.3271 -0.5132 6.5164 16 1 4.3268 0.4954 6.9507 17 1 2.0293 0.1584 6.2520 18 1 3.1506 -1.5277 7.5863 19 6 3.5709 -0.7290 1.2465 20 1 -0.3634 0.5138 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 1.8934 -0.5138 -0.8899 24 1 1.6767 1.9563 -0.8900 25 1 1.6766 1.9564 0.8900 26 1 3.1299 1.4426 0.0005 27 1 1.8580 -2.6675 0.3404 28 1 0.4412 -2.1671 1.2952 29 1 1.7434 -3.9310 2.4661 30 1 1.7535 -2.4038 3.3799 31 1 3.9015 -3.3655 1.6051 32 1 4.9710 -2.8716 4.2248 33 1 3.9398 0.2958 1.2887 34 1 3.9308 -1.2088 0.3364 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259921074.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:44 Heat of formation + Delta-G solvation = -29.207883 kcal Electronic energy + Delta-G solvation = -13519.630708 eV Core-core repulsion = 11451.014764 eV Total energy + Delta-G solvation = -2068.615944 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -38.64365 -35.04923 -32.17839 -29.86676 -29.23629 -26.84992 -24.64438 -22.67787 -21.51363 -19.67003 -19.16038 -16.21620 -15.38436 -14.40652 -13.77181 -13.56272 -13.48453 -13.34883 -13.13586 -12.27438 -12.02005 -11.81095 -11.43662 -11.12823 -10.98871 -10.66995 -10.61962 -10.46184 -10.31371 -10.02777 -9.87758 -9.60239 -9.24647 -8.37319 -8.14459 -7.02066 -6.06082 -3.86267 3.50398 3.53486 3.69058 4.66239 5.14923 5.26527 5.29219 5.43071 5.67052 5.82030 5.87048 5.94196 6.01668 6.05015 6.10895 6.18140 6.24135 6.40607 6.43508 6.46916 6.53708 6.62674 6.70748 6.97542 7.01231 7.03420 7.24362 7.49899 8.09280 8.42211 8.70877 8.89219 9.18742 9.95270 11.32813 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.038380 B = 0.012240 C = 0.011105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.372875 B = 2287.038528 C = 2520.862689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.094 4.094 3 C -0.145 4.145 4 C -0.069 4.069 5 H 0.078 0.922 6 C -0.144 4.144 7 C 0.075 3.925 8 N -0.672 5.672 9 C 0.198 3.802 10 H 0.027 0.973 11 C -0.601 4.601 12 H 0.045 0.955 13 C 0.034 3.966 14 N -0.896 5.896 15 Si 1.060 2.940 16 H -0.291 1.291 17 H -0.292 1.292 18 H -0.287 1.287 19 C -0.129 4.129 20 H 0.052 0.948 21 H 0.044 0.956 22 H 0.054 0.946 23 H 0.057 0.943 24 H 0.043 0.957 25 H 0.053 0.947 26 H 0.057 0.943 27 H 0.042 0.958 28 H 0.051 0.949 29 H 0.042 0.958 30 H 0.082 0.918 31 H 0.299 0.701 32 H 0.289 0.711 33 H 0.054 0.946 34 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.197 3.252 -8.360 10.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.113 4.113 3 C -0.202 4.202 4 C -0.087 4.087 5 H 0.096 0.904 6 C -0.183 4.183 7 C -0.055 4.055 8 N -0.299 5.299 9 C 0.091 3.909 10 H 0.044 0.956 11 C -0.640 4.640 12 H 0.063 0.937 13 C -0.175 4.175 14 N -0.531 5.531 15 Si 0.890 3.110 16 H -0.218 1.218 17 H -0.218 1.218 18 H -0.213 1.213 19 C -0.169 4.169 20 H 0.071 0.929 21 H 0.063 0.937 22 H 0.073 0.927 23 H 0.076 0.924 24 H 0.062 0.938 25 H 0.072 0.928 26 H 0.076 0.924 27 H 0.060 0.940 28 H 0.070 0.930 29 H 0.061 0.939 30 H 0.101 0.899 31 H 0.114 0.886 32 H 0.102 0.898 33 H 0.072 0.928 34 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -6.065 3.036 -6.014 9.065 hybrid contribution -0.336 0.472 -2.677 2.739 sum -6.401 3.508 -8.691 11.349 Atomic orbital electron populations 1.21865 0.96076 1.01409 1.00897 1.21212 0.95040 0.96110 0.98914 1.21843 1.01377 0.96215 1.00763 1.21075 0.96027 0.94956 0.96669 0.90369 1.22306 0.99639 0.96864 0.99508 1.21693 0.89249 0.97150 0.97383 1.61012 1.07329 1.18895 1.42700 1.19320 0.94505 0.84201 0.92865 0.95551 1.21717 1.38193 1.12775 0.91327 0.93671 1.25526 0.94985 0.96082 1.00933 1.70516 1.30928 1.17118 1.34513 0.83704 0.75779 0.75456 0.76080 1.21803 1.21829 1.21269 1.22202 0.94972 1.00898 0.98782 0.92857 0.93681 0.92697 0.92423 0.93788 0.92808 0.92423 0.93967 0.92984 0.93902 0.89921 0.88567 0.89834 0.92772 0.95332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 8.84 37.16 0.33 -1.66 16 2 C -0.09 -1.46 2.51 -90.62 -0.23 -1.69 16 3 C -0.14 -2.13 8.85 37.16 0.33 -1.80 16 4 C -0.07 -1.29 1.58 -90.51 -0.14 -1.44 16 5 H 0.08 1.68 6.74 -51.93 -0.35 1.33 16 6 C -0.14 -2.62 4.93 -26.65 -0.13 -2.75 16 7 C 0.08 1.61 6.31 -3.83 -0.02 1.59 16 8 N -0.67 -15.68 5.23 -107.99 -0.56 -16.24 16 9 C 0.20 4.90 2.57 -68.88 -0.18 4.72 16 10 H 0.03 0.72 8.01 -51.93 -0.42 0.30 16 11 C -0.60 -16.49 6.47 -34.44 -0.22 -16.71 16 12 H 0.05 1.25 6.76 -52.49 -0.35 0.90 16 13 C 0.03 0.97 5.39 -17.82 -0.10 0.87 16 14 N -0.90 -27.22 13.51 55.43 0.75 -26.47 16 15 Si 1.06 25.50 29.90 -169.99 -5.08 20.42 16 16 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 17 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 18 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 19 C -0.13 -2.68 4.42 -26.66 -0.12 -2.80 16 20 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 21 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 22 H 0.05 0.74 6.49 -51.93 -0.34 0.40 16 23 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 24 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 25 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 26 H 0.06 0.88 6.50 -51.93 -0.34 0.54 16 27 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.05 0.87 6.58 -51.93 -0.34 0.53 16 29 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.08 2.02 6.99 -51.93 -0.36 1.66 16 31 H 0.30 6.32 8.86 -39.29 -0.35 5.97 16 32 H 0.29 8.80 6.39 -40.82 -0.26 8.54 16 33 H 0.05 1.13 6.58 -51.93 -0.34 0.79 16 34 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 256.85 15.07 3.87 3.87 Total: -1.00 -29.00 256.85 -7.14 -36.14 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -5.63 Total: 3.95 kcal Atomic # 6 Polarization: -21.18 SS G_CDS: -0.48 Total: -21.66 kcal Atomic # 7 Polarization: -42.90 SS G_CDS: 0.18 Total: -42.71 kcal Atomic # 14 Polarization: 25.50 SS G_CDS: -5.08 Total: 20.42 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -29.00 -7.14 -36.14 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259921074.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.928 kcal (2) G-P(sol) polarization free energy of solvation -28.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds