Wall clock time and date at job start Mon Mar 30 2020 02:20:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46810 * 2 1 4 4 C 1.52998 * 109.46777 * 119.99986 * 2 1 3 5 5 H 1.09003 * 109.52309 * 299.86911 * 4 2 1 6 6 C 1.53114 * 109.52570 * 60.00398 * 4 2 1 7 7 C 1.53034 * 109.28174 * 177.55902 * 6 4 2 8 8 N 1.46852 * 109.52122 * 300.82009 * 7 6 4 9 9 C 1.46851 * 111.19757 * 61.74018 * 8 7 6 10 10 H 1.08997 * 109.45918 * 178.25389 * 9 8 7 11 11 C 1.50696 * 109.46100 * 58.27412 * 9 8 7 12 12 H 1.07995 * 120.00332 * 239.97275 * 11 9 8 13 13 C 1.37880 * 119.99983 * 59.98111 * 11 9 8 14 14 N 1.31517 * 120.00210 * 359.97438 * 13 11 9 15 15 Si 1.86800 * 120.00019 * 179.97438 * 13 11 9 16 16 H 1.48503 * 109.46845 * 269.99914 * 15 13 11 17 17 H 1.48503 * 109.47399 * 29.99403 * 15 13 11 18 18 H 1.48498 * 109.47295 * 150.00010 * 15 13 11 19 19 C 1.53033 * 109.51279 * 298.26409 * 9 8 7 20 20 H 1.08998 * 109.47380 * 300.00022 * 1 2 3 21 21 H 1.09006 * 109.46989 * 60.00143 * 1 2 3 22 22 H 1.08998 * 109.47224 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47380 * 239.99978 * 2 1 3 24 24 H 1.08996 * 109.47567 * 299.99257 * 3 2 1 25 25 H 1.08998 * 109.47613 * 60.00142 * 3 2 1 26 26 H 1.09000 * 109.47076 * 179.97438 * 3 2 1 27 27 H 1.08997 * 109.50615 * 57.61157 * 6 4 2 28 28 H 1.09002 * 109.53159 * 297.51633 * 6 4 2 29 29 H 1.08994 * 109.46460 * 180.80218 * 7 6 4 30 30 H 1.09002 * 109.46117 * 60.83141 * 7 6 4 31 31 H 1.00902 * 110.99608 * 297.64266 * 8 7 6 32 32 H 0.97000 * 119.99462 * 359.97438 * 14 13 11 33 33 H 1.08999 * 109.49989 * 179.11863 * 19 9 8 34 34 H 1.09000 * 109.50255 * 299.23419 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 1 1.6789 -0.2067 2.1398 6 6 1.5303 -2.1651 1.2504 7 6 2.0930 -2.8986 2.4700 8 7 3.5605 -2.8787 2.4206 9 6 4.0747 -1.5039 2.4662 10 1 5.1645 -1.5234 2.4593 11 6 3.5925 -0.8289 3.7243 12 1 2.9872 0.0631 3.6605 13 6 3.9243 -1.3502 4.9569 14 7 4.6612 -2.4368 5.0346 15 14 3.3271 -0.5132 6.5164 16 1 4.3268 0.4954 6.9507 17 1 2.0293 0.1584 6.2520 18 1 3.1506 -1.5277 7.5863 19 6 3.5709 -0.7290 1.2465 20 1 -0.3634 0.5138 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 1.8934 -0.5138 -0.8899 24 1 1.6767 1.9563 -0.8900 25 1 1.6766 1.9564 0.8900 26 1 3.1299 1.4426 0.0005 27 1 1.8580 -2.6675 0.3404 28 1 0.4412 -2.1671 1.2952 29 1 1.7434 -3.9310 2.4661 30 1 1.7535 -2.4038 3.3799 31 1 3.9015 -3.3655 1.6051 32 1 4.9710 -2.8716 4.2248 33 1 3.9398 0.2958 1.2887 34 1 3.9308 -1.2088 0.3364 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259921074.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:43 Heat of formation + Delta-G solvation = -47.236597 kcal Electronic energy + Delta-G solvation = -13520.412492 eV Core-core repulsion = 11451.014764 eV Total energy + Delta-G solvation = -2069.397728 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.28133 -36.59151 -34.19242 -31.62632 -30.81926 -28.05936 -26.69781 -24.29906 -23.22090 -21.36997 -20.67427 -18.27988 -17.01614 -16.00755 -15.56734 -15.28407 -15.07719 -14.97358 -14.50978 -13.83955 -13.48461 -13.20929 -12.97390 -12.90869 -12.60636 -12.41984 -12.20874 -12.06443 -11.91896 -11.71538 -11.36245 -11.22629 -10.84614 -10.47902 -10.27573 -8.87268 -8.26567 -6.11870 1.53856 1.62096 1.78566 2.65181 3.36181 3.81292 3.84644 3.94016 4.09400 4.34193 4.49117 4.54043 4.62551 4.68239 4.75463 4.79865 4.92593 4.98801 5.00150 5.06137 5.14623 5.17209 5.25011 5.35606 5.45216 5.51209 5.59249 5.69558 6.05158 6.34493 6.71235 6.82603 7.14995 7.76742 9.06174 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.038380 B = 0.012240 C = 0.011105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.372875 B = 2287.038528 C = 2520.862689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.089 4.089 3 C -0.144 4.144 4 C -0.064 4.064 5 H 0.047 0.953 6 C -0.134 4.134 7 C 0.077 3.923 8 N -0.688 5.688 9 C 0.195 3.805 10 H -0.007 1.007 11 C -0.600 4.600 12 H 0.037 0.963 13 C -0.016 4.016 14 N -0.926 5.926 15 Si 1.103 2.897 16 H -0.279 1.279 17 H -0.277 1.277 18 H -0.289 1.289 19 C -0.120 4.120 20 H 0.046 0.954 21 H 0.067 0.933 22 H 0.059 0.941 23 H 0.068 0.932 24 H 0.069 0.931 25 H 0.043 0.957 26 H 0.046 0.954 27 H 0.060 0.940 28 H 0.073 0.927 29 H 0.059 0.941 30 H 0.045 0.955 31 H 0.314 0.686 32 H 0.277 0.723 33 H 0.047 0.953 34 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.702 3.797 -9.740 12.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.107 4.107 3 C -0.201 4.201 4 C -0.082 4.082 5 H 0.065 0.935 6 C -0.173 4.173 7 C -0.053 4.053 8 N -0.317 5.317 9 C 0.088 3.912 10 H 0.011 0.989 11 C -0.639 4.639 12 H 0.056 0.944 13 C -0.219 4.219 14 N -0.563 5.563 15 Si 0.928 3.072 16 H -0.205 1.205 17 H -0.202 1.202 18 H -0.215 1.215 19 C -0.160 4.160 20 H 0.065 0.935 21 H 0.086 0.914 22 H 0.078 0.922 23 H 0.086 0.914 24 H 0.088 0.912 25 H 0.063 0.937 26 H 0.065 0.935 27 H 0.078 0.922 28 H 0.091 0.909 29 H 0.077 0.923 30 H 0.064 0.936 31 H 0.130 0.870 32 H 0.088 0.912 33 H 0.066 0.934 34 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -7.579 3.591 -7.416 11.195 hybrid contribution 0.154 0.293 -2.294 2.318 sum -7.425 3.884 -9.711 12.826 Atomic orbital electron populations 1.21835 0.94347 1.02018 1.01722 1.21154 0.96445 0.96045 0.97092 1.21835 1.00718 0.96002 1.01583 1.20986 0.94288 0.95631 0.97336 0.93494 1.22190 1.00763 0.95931 0.98382 1.21643 0.88074 0.98197 0.97410 1.60761 1.08815 1.18186 1.43945 1.19180 0.92659 0.85587 0.93811 0.98921 1.21975 1.37019 1.12315 0.92595 0.94424 1.26802 0.94664 0.96061 1.04345 1.70634 1.33140 1.18637 1.33865 0.83117 0.76287 0.74900 0.72898 1.20475 1.20202 1.21480 1.22055 0.96663 0.99875 0.97393 0.93520 0.91428 0.92209 0.91371 0.91226 0.93742 0.93475 0.92150 0.90876 0.92299 0.93595 0.87022 0.91151 0.93427 0.93702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.39 8.84 71.98 0.64 -2.76 16 2 C -0.09 -2.50 2.51 -10.79 -0.03 -2.52 16 3 C -0.14 -3.90 8.85 71.98 0.64 -3.26 16 4 C -0.06 -2.30 1.58 -10.72 -0.02 -2.32 16 5 H 0.05 1.99 6.74 -2.39 -0.02 1.98 16 6 C -0.13 -4.55 4.93 30.64 0.15 -4.40 16 7 C 0.08 3.22 6.31 86.32 0.54 3.77 16 8 N -0.69 -32.24 5.23 -495.57 -2.59 -34.83 16 9 C 0.20 9.82 2.57 44.19 0.11 9.93 16 10 H -0.01 -0.40 8.01 -2.39 -0.02 -0.42 16 11 C -0.60 -33.53 6.47 25.60 0.17 -33.37 16 12 H 0.04 2.12 6.76 -2.91 -0.02 2.10 16 13 C -0.02 -0.92 5.39 84.65 0.46 -0.46 16 14 N -0.93 -57.56 13.51 21.45 0.29 -57.27 16 15 Si 1.10 51.80 29.90 68.60 2.05 53.85 16 16 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 17 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 18 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 19 C -0.12 -4.92 4.42 30.64 0.14 -4.79 16 20 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 21 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 22 H 0.06 1.37 6.49 -2.39 -0.02 1.35 16 23 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 24 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 25 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 26 H 0.05 1.35 6.50 -2.39 -0.02 1.34 16 27 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 28 H 0.07 2.21 6.58 -2.39 -0.02 2.20 16 29 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 30 H 0.05 2.26 6.99 -2.39 -0.02 2.24 16 31 H 0.31 13.08 8.86 -89.69 -0.79 12.28 16 32 H 0.28 17.41 6.39 -92.71 -0.59 16.81 16 33 H 0.05 1.98 6.58 -2.39 -0.02 1.96 16 34 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -62.90 256.85 2.99 -59.91 By element: Atomic # 1 Polarization: 18.08 SS G_CDS: 0.44 Total: 18.52 kcal Atomic # 6 Polarization: -42.97 SS G_CDS: 2.80 Total: -40.18 kcal Atomic # 7 Polarization: -89.80 SS G_CDS: -2.30 Total: -92.10 kcal Atomic # 14 Polarization: 51.80 SS G_CDS: 2.05 Total: 53.85 kcal Total: -62.90 2.99 -59.91 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259921074.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.671 kcal (2) G-P(sol) polarization free energy of solvation -62.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds