Wall clock time and date at job start Mon Mar 30 2020 02:24:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.46810 * 2 1 4 4 C 1.50696 * 109.46870 * 239.99903 * 2 1 3 5 5 H 1.08003 * 120.00236 * 239.99617 * 4 2 1 6 6 C 1.37879 * 120.00381 * 60.00308 * 4 2 1 7 7 N 1.31513 * 119.99719 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00240 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47214 * 59.99863 * 8 6 4 10 10 H 1.48502 * 109.47179 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.46924 * 299.99963 * 8 6 4 12 12 N 1.46895 * 109.46774 * 119.99978 * 2 1 3 13 13 C 1.46850 * 111.00333 * 299.99982 * 12 2 1 14 14 C 1.53036 * 109.52384 * 174.16360 * 13 12 2 15 15 C 1.53120 * 109.27700 * 59.18090 * 14 13 12 16 16 C 1.53120 * 109.15972 * 302.34018 * 15 14 13 17 17 C 1.46850 * 110.99945 * 175.78914 * 12 2 1 18 18 H 1.09004 * 109.47314 * 300.00277 * 1 2 3 19 19 H 1.09010 * 109.47387 * 59.99905 * 1 2 3 20 20 H 1.08999 * 109.47660 * 179.97438 * 1 2 3 21 21 H 1.09004 * 109.46654 * 180.02562 * 3 2 1 22 22 H 1.08999 * 109.47351 * 299.99449 * 3 2 1 23 23 H 1.08994 * 109.47741 * 60.00251 * 3 2 1 24 24 H 0.97004 * 120.00360 * 180.02562 * 7 6 4 25 25 H 1.08995 * 109.45831 * 54.14149 * 13 12 2 26 26 H 1.08998 * 109.45719 * 294.17998 * 13 12 2 27 27 H 1.08998 * 109.49982 * 179.12006 * 14 13 12 28 28 H 1.08992 * 109.50379 * 299.23548 * 14 13 12 29 29 H 1.08996 * 109.52458 * 62.25353 * 15 14 13 30 30 H 1.09005 * 109.51651 * 182.44129 * 15 14 13 31 31 H 1.09000 * 109.49976 * 177.59581 * 16 15 14 32 32 H 1.08997 * 109.50809 * 297.71813 * 16 15 14 33 33 H 1.09007 * 109.46080 * 65.82377 * 17 12 2 34 34 H 1.09001 * 109.46443 * 305.85821 * 17 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4828 7 7 0.9428 0.8296 -2.6034 8 14 2.3224 -1.1196 -4.0079 9 1 1.8279 -2.5199 -4.0081 10 1 1.8269 -0.4200 -5.2205 11 1 3.8074 -1.1191 -4.0077 12 7 2.0196 -0.6925 1.1994 13 6 1.5487 -0.0266 2.4207 14 6 1.9538 -0.8538 3.6428 15 6 3.4779 -0.9980 3.6730 16 6 3.9469 -1.6501 2.3694 17 6 3.4841 -0.7999 1.1841 18 1 -0.3634 0.5139 0.8900 19 1 -0.3634 0.5139 -0.8900 20 1 -0.3634 -1.0276 -0.0005 21 1 3.1299 1.4425 -0.0005 22 1 1.6766 1.9563 -0.8900 23 1 1.6767 1.9564 0.8899 24 1 0.7081 1.1609 -3.4844 25 1 0.4632 0.0659 2.3883 26 1 1.9957 0.9651 2.4889 27 1 1.6178 -0.3513 4.5499 28 1 1.4960 -1.8410 3.5821 29 1 3.9351 -0.0136 3.7730 30 1 3.7680 -1.6228 4.5178 31 1 5.0349 -1.7165 2.3667 32 1 3.5205 -2.6499 2.2886 33 1 3.9220 0.1956 1.2582 34 1 3.8042 -1.2690 0.2538 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259924986.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:57 Heat of formation + Delta-G solvation = -5.290614 kcal Electronic energy + Delta-G solvation = -13627.362405 eV Core-core repulsion = 11559.783591 eV Total energy + Delta-G solvation = -2067.578814 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.57773 -34.86239 -31.89650 -30.26665 -28.76820 -25.70159 -25.25908 -23.27291 -22.04580 -19.57974 -18.28708 -16.00822 -15.40433 -14.26914 -13.93600 -13.72545 -13.30517 -13.04555 -12.76051 -12.28375 -11.67525 -11.52938 -11.35197 -10.91307 -10.74514 -10.59790 -10.38498 -10.25572 -10.14798 -10.00847 -9.74095 -9.62810 -9.30786 -8.63220 -8.31162 -6.97848 -5.95036 -4.01364 3.33738 3.38024 3.41224 4.43145 5.04982 5.32159 5.38085 5.42555 5.49162 5.88586 6.09232 6.11139 6.19620 6.37965 6.40583 6.42225 6.55825 6.65180 6.76800 6.84495 6.90977 6.93890 7.01448 7.08092 7.34871 7.62950 7.70330 7.87342 7.94305 8.32621 8.53288 8.73929 9.04109 9.64050 11.08092 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.048665 B = 0.011990 C = 0.010559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.229667 B = 2334.811723 C = 2651.085612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.232 3.768 3 C -0.165 4.165 4 C -0.494 4.494 5 H 0.061 0.939 6 C 0.061 3.939 7 N -0.891 5.891 8 Si 0.895 3.105 9 H -0.277 1.277 10 H -0.289 1.289 11 H -0.279 1.279 12 N -0.527 5.527 13 C 0.050 3.950 14 C -0.115 4.115 15 C -0.117 4.117 16 C -0.118 4.118 17 C 0.062 3.938 18 H 0.008 0.992 19 H 0.085 0.915 20 H 0.032 0.968 21 H 0.025 0.975 22 H 0.087 0.913 23 H 0.009 0.991 24 H 0.259 0.741 25 H 0.069 0.931 26 H 0.022 0.978 27 H 0.052 0.948 28 H 0.064 0.936 29 H 0.052 0.948 30 H 0.051 0.949 31 H 0.053 0.947 32 H 0.064 0.936 33 H 0.020 0.980 34 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.726 -1.535 7.904 8.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.144 3.856 3 C -0.224 4.224 4 C -0.532 4.532 5 H 0.080 0.920 6 C -0.140 4.140 7 N -0.530 5.530 8 Si 0.723 3.277 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.205 1.205 12 N -0.251 5.251 13 C -0.079 4.079 14 C -0.153 4.153 15 C -0.155 4.155 16 C -0.156 4.156 17 C -0.066 4.066 18 H 0.027 0.973 19 H 0.103 0.897 20 H 0.051 0.949 21 H 0.045 0.955 22 H 0.106 0.894 23 H 0.028 0.972 24 H 0.069 0.931 25 H 0.088 0.912 26 H 0.040 0.960 27 H 0.071 0.929 28 H 0.083 0.917 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.038 0.962 34 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 2.444 -1.897 7.739 8.335 hybrid contribution 0.668 0.462 -0.825 1.158 sum 3.112 -1.435 6.914 7.717 Atomic orbital electron populations 1.21833 0.97170 0.99465 0.99907 1.18656 0.91990 0.88722 0.86230 1.22388 0.98667 1.00793 1.00561 1.21070 1.30906 1.11715 0.89551 0.92050 1.24879 0.95208 0.95080 0.98826 1.69810 1.37045 1.22975 1.23183 0.86612 0.79033 0.79790 0.82253 1.20309 1.21437 1.20461 1.62210 1.08746 1.52169 1.02002 1.22062 1.00146 0.94863 0.90808 1.21584 0.95610 1.00848 0.97237 1.21545 0.96400 1.00028 0.97512 1.21640 0.98973 1.00065 0.94903 1.21946 0.89373 0.97322 0.97972 0.97266 0.89669 0.94877 0.95546 0.89400 0.97214 0.93059 0.91240 0.95974 0.92914 0.91690 0.92930 0.93002 0.92851 0.91736 0.96204 0.89887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.09 8.03 37.16 0.30 -2.80 16 2 C 0.23 5.74 0.43 -132.76 -0.06 5.69 16 3 C -0.16 -4.05 7.56 37.16 0.28 -3.77 16 4 C -0.49 -13.34 7.31 -34.44 -0.25 -13.59 16 5 H 0.06 1.67 6.40 -52.48 -0.34 1.34 16 6 C 0.06 1.64 5.15 -17.82 -0.09 1.55 16 7 N -0.89 -24.60 9.35 55.43 0.52 -24.08 16 8 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 9 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 10 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 12 N -0.53 -11.59 4.46 -220.36 -0.98 -12.58 16 13 C 0.05 0.96 4.65 -3.83 -0.02 0.94 16 14 C -0.11 -1.82 6.09 -26.65 -0.16 -1.98 16 15 C -0.12 -1.75 6.00 -26.61 -0.16 -1.91 16 16 C -0.12 -1.95 6.09 -26.65 -0.16 -2.11 16 17 C 0.06 1.27 4.75 -3.83 -0.02 1.25 16 18 H 0.01 0.19 6.28 -51.93 -0.33 -0.13 16 19 H 0.08 2.27 6.07 -51.92 -0.32 1.95 16 20 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 21 H 0.03 0.63 6.63 -51.93 -0.34 0.29 16 22 H 0.09 2.35 6.07 -51.93 -0.32 2.04 16 23 H 0.01 0.21 6.54 -51.93 -0.34 -0.13 16 24 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 25 H 0.07 1.35 6.00 -51.93 -0.31 1.04 16 26 H 0.02 0.44 6.63 -51.93 -0.34 0.09 16 27 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 29 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.02 0.42 6.71 -51.92 -0.35 0.07 16 34 H 0.08 1.83 6.02 -51.93 -0.31 1.52 16 LS Contribution 249.40 15.07 3.76 3.76 Total: -1.00 -27.17 249.40 -7.46 -34.63 By element: Atomic # 1 Polarization: 4.21 SS G_CDS: -5.39 Total: -1.18 kcal Atomic # 6 Polarization: -16.40 SS G_CDS: -0.34 Total: -16.74 kcal Atomic # 7 Polarization: -36.19 SS G_CDS: -0.47 Total: -36.66 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -27.17 -7.46 -34.63 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259924986.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.335 kcal (2) G-P(sol) polarization free energy of solvation -27.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds