Wall clock time and date at job start Mon Mar 30 2020 02:24:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.46810 * 2 1 4 4 C 1.50696 * 109.46870 * 239.99903 * 2 1 3 5 5 H 1.08003 * 120.00236 * 239.99617 * 4 2 1 6 6 C 1.37879 * 120.00381 * 60.00308 * 4 2 1 7 7 N 1.31513 * 119.99719 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00240 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47214 * 59.99863 * 8 6 4 10 10 H 1.48502 * 109.47179 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.46924 * 299.99963 * 8 6 4 12 12 N 1.46895 * 109.46774 * 119.99978 * 2 1 3 13 13 C 1.46850 * 111.00333 * 299.99982 * 12 2 1 14 14 C 1.53036 * 109.52384 * 174.16360 * 13 12 2 15 15 C 1.53120 * 109.27700 * 59.18090 * 14 13 12 16 16 C 1.53120 * 109.15972 * 302.34018 * 15 14 13 17 17 C 1.46850 * 110.99945 * 175.78914 * 12 2 1 18 18 H 1.09004 * 109.47314 * 300.00277 * 1 2 3 19 19 H 1.09010 * 109.47387 * 59.99905 * 1 2 3 20 20 H 1.08999 * 109.47660 * 179.97438 * 1 2 3 21 21 H 1.09004 * 109.46654 * 180.02562 * 3 2 1 22 22 H 1.08999 * 109.47351 * 299.99449 * 3 2 1 23 23 H 1.08994 * 109.47741 * 60.00251 * 3 2 1 24 24 H 0.97004 * 120.00360 * 180.02562 * 7 6 4 25 25 H 1.08995 * 109.45831 * 54.14149 * 13 12 2 26 26 H 1.08998 * 109.45719 * 294.17998 * 13 12 2 27 27 H 1.08998 * 109.49982 * 179.12006 * 14 13 12 28 28 H 1.08992 * 109.50379 * 299.23548 * 14 13 12 29 29 H 1.08996 * 109.52458 * 62.25353 * 15 14 13 30 30 H 1.09005 * 109.51651 * 182.44129 * 15 14 13 31 31 H 1.09000 * 109.49976 * 177.59581 * 16 15 14 32 32 H 1.08997 * 109.50809 * 297.71813 * 16 15 14 33 33 H 1.09007 * 109.46080 * 65.82377 * 17 12 2 34 34 H 1.09001 * 109.46443 * 305.85821 * 17 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4828 7 7 0.9428 0.8296 -2.6034 8 14 2.3224 -1.1196 -4.0079 9 1 1.8279 -2.5199 -4.0081 10 1 1.8269 -0.4200 -5.2205 11 1 3.8074 -1.1191 -4.0077 12 7 2.0196 -0.6925 1.1994 13 6 1.5487 -0.0266 2.4207 14 6 1.9538 -0.8538 3.6428 15 6 3.4779 -0.9980 3.6730 16 6 3.9469 -1.6501 2.3694 17 6 3.4841 -0.7999 1.1841 18 1 -0.3634 0.5139 0.8900 19 1 -0.3634 0.5139 -0.8900 20 1 -0.3634 -1.0276 -0.0005 21 1 3.1299 1.4425 -0.0005 22 1 1.6766 1.9563 -0.8900 23 1 1.6767 1.9564 0.8899 24 1 0.7081 1.1609 -3.4844 25 1 0.4632 0.0659 2.3883 26 1 1.9957 0.9651 2.4889 27 1 1.6178 -0.3513 4.5499 28 1 1.4960 -1.8410 3.5821 29 1 3.9351 -0.0136 3.7730 30 1 3.7680 -1.6228 4.5178 31 1 5.0349 -1.7165 2.3667 32 1 3.5205 -2.6499 2.2886 33 1 3.9220 0.1956 1.2582 34 1 3.8042 -1.2690 0.2538 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259924986.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:57 Heat of formation + Delta-G solvation = -21.316563 kcal Electronic energy + Delta-G solvation = -13628.057342 eV Core-core repulsion = 11559.783591 eV Total energy + Delta-G solvation = -2068.273751 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.21871 -36.55921 -33.77649 -31.73229 -30.52502 -27.68600 -27.28390 -24.81623 -23.55128 -21.17777 -19.96290 -17.92328 -17.29275 -16.03563 -15.51703 -15.13641 -14.96145 -14.73596 -14.36116 -13.98217 -13.42603 -13.31462 -13.04070 -12.80711 -12.55151 -12.38991 -12.11911 -11.99807 -11.88916 -11.63697 -11.44757 -11.26244 -10.85327 -10.58806 -10.35604 -8.72216 -8.01373 -6.13801 1.43727 1.44662 1.51708 2.45360 3.22713 3.45975 4.06922 4.12398 4.20276 4.46159 4.62034 4.70317 4.76552 4.80455 4.88108 4.94104 5.02370 5.07948 5.13087 5.18723 5.20555 5.31896 5.36947 5.43175 5.56063 5.62003 5.68079 5.88451 5.98483 6.39228 6.59396 6.91666 7.00585 7.54970 8.99773 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.048665 B = 0.011990 C = 0.010559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.229667 B = 2334.811723 C = 2651.085612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.225 3.775 3 C -0.151 4.151 4 C -0.510 4.510 5 H 0.052 0.948 6 C 0.019 3.981 7 N -0.909 5.909 8 Si 0.951 3.049 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.276 1.276 12 N -0.536 5.536 13 C 0.047 3.953 14 C -0.110 4.110 15 C -0.114 4.114 16 C -0.112 4.112 17 C 0.063 3.937 18 H 0.027 0.973 19 H 0.062 0.938 20 H 0.023 0.977 21 H 0.019 0.981 22 H 0.063 0.937 23 H 0.023 0.977 24 H 0.259 0.741 25 H 0.063 0.937 26 H 0.016 0.984 27 H 0.080 0.920 28 H 0.063 0.937 29 H 0.055 0.945 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.061 0.939 33 H 0.010 0.990 34 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.356 -2.146 9.286 10.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.137 3.863 3 C -0.210 4.210 4 C -0.549 4.549 5 H 0.070 0.930 6 C -0.180 4.180 7 N -0.549 5.549 8 Si 0.777 3.223 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.201 1.201 12 N -0.261 5.261 13 C -0.081 4.081 14 C -0.147 4.147 15 C -0.151 4.151 16 C -0.150 4.150 17 C -0.065 4.065 18 H 0.046 0.954 19 H 0.081 0.919 20 H 0.043 0.957 21 H 0.038 0.962 22 H 0.082 0.918 23 H 0.042 0.958 24 H 0.068 0.932 25 H 0.082 0.918 26 H 0.034 0.966 27 H 0.098 0.902 28 H 0.082 0.918 29 H 0.073 0.927 30 H 0.100 0.900 31 H 0.093 0.907 32 H 0.080 0.920 33 H 0.028 0.972 34 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 3.079 -2.512 9.137 9.963 hybrid contribution 0.466 0.667 -1.233 1.477 sum 3.545 -1.844 7.904 8.857 Atomic orbital electron populations 1.21676 0.97302 0.98725 0.99655 1.18606 0.91956 0.88693 0.87088 1.22210 0.98078 1.00821 0.99938 1.21310 1.30968 1.11677 0.90895 0.93007 1.25534 0.95467 0.95763 1.01251 1.69933 1.37605 1.23780 1.23552 0.85727 0.78562 0.78728 0.79238 1.20134 1.21072 1.20101 1.62165 1.09753 1.52112 1.02038 1.22159 0.99708 0.95163 0.91058 1.21568 0.96439 1.00327 0.96391 1.21543 0.95514 1.00634 0.97410 1.21599 1.00268 0.99064 0.94027 1.21938 0.88416 0.97345 0.98832 0.95401 0.91944 0.95732 0.96160 0.91823 0.95832 0.93173 0.91828 0.96571 0.90185 0.91830 0.92663 0.89979 0.90750 0.91994 0.97175 0.92436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.71 8.03 71.98 0.58 -5.13 16 2 C 0.23 11.22 0.43 2.78 0.00 11.22 16 3 C -0.15 -7.48 7.56 71.98 0.54 -6.93 16 4 C -0.51 -27.89 7.31 25.60 0.19 -27.70 16 5 H 0.05 2.87 6.40 -2.91 -0.02 2.85 16 6 C 0.02 1.01 5.15 84.66 0.44 1.45 16 7 N -0.91 -50.87 9.35 21.45 0.20 -50.67 16 8 Si 0.95 43.78 29.54 68.60 2.03 45.80 16 9 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 10 H -0.29 -12.88 7.11 99.48 0.71 -12.18 16 11 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 12 N -0.54 -23.27 4.46 -851.08 -3.80 -27.07 16 13 C 0.05 1.74 4.65 86.32 0.40 2.14 16 14 C -0.11 -3.12 6.09 30.65 0.19 -2.93 16 15 C -0.11 -2.98 6.00 30.67 0.18 -2.79 16 16 C -0.11 -3.42 6.09 30.65 0.19 -3.23 16 17 C 0.06 2.52 4.75 86.32 0.41 2.93 16 18 H 0.03 1.22 6.28 -2.39 -0.01 1.21 16 19 H 0.06 3.37 6.07 -2.38 -0.01 3.35 16 20 H 0.02 1.19 8.14 -2.39 -0.02 1.17 16 21 H 0.02 0.97 6.63 -2.39 -0.02 0.95 16 22 H 0.06 3.45 6.07 -2.39 -0.01 3.44 16 23 H 0.02 1.05 6.54 -2.39 -0.02 1.03 16 24 H 0.26 13.95 8.31 -92.71 -0.77 13.17 16 25 H 0.06 2.38 6.00 -2.39 -0.01 2.36 16 26 H 0.02 0.61 6.63 -2.39 -0.02 0.60 16 27 H 0.08 1.87 8.14 -2.39 -0.02 1.86 16 28 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.08 1.72 8.14 -2.38 -0.02 1.70 16 31 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.01 0.42 6.71 -2.38 -0.02 0.40 16 34 H 0.06 2.56 6.02 -2.39 -0.01 2.55 16 Total: -1.00 -57.51 249.40 2.60 -54.91 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: 1.06 Total: 8.01 kcal Atomic # 6 Polarization: -34.10 SS G_CDS: 3.11 Total: -30.98 kcal Atomic # 7 Polarization: -74.14 SS G_CDS: -3.60 Total: -77.74 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.80 kcal Total: -57.51 2.60 -54.91 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259924986.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.595 kcal (2) G-P(sol) polarization free energy of solvation -57.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds