Wall clock time and date at job start Mon Mar 30 2020 02:25:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46975 * 2 1 4 4 C 1.53004 * 109.46692 * 240.00416 * 2 1 3 5 5 N 1.46897 * 109.47212 * 120.00547 * 2 1 3 6 6 C 1.47481 * 111.00132 * 49.91308 * 5 2 1 7 7 C 1.53514 * 87.92823 * 138.70521 * 6 5 2 8 8 C 1.47475 * 111.00191 * 145.88920 * 5 2 1 9 9 H 1.09000 * 113.47333 * 336.06084 * 8 5 2 10 10 C 1.52998 * 113.47627 * 106.52742 * 8 5 2 11 11 C 1.50698 * 109.47140 * 286.86322 * 10 8 5 12 12 H 1.08007 * 119.99905 * 324.09143 * 11 10 8 13 13 C 1.37875 * 120.00142 * 144.09943 * 11 10 8 14 14 N 1.31515 * 120.00166 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 120.00175 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.46921 * 359.97438 * 15 13 11 17 17 H 1.48504 * 109.47365 * 119.99325 * 15 13 11 18 18 H 1.48499 * 109.47260 * 239.99556 * 15 13 11 19 19 H 1.09004 * 109.47029 * 294.67877 * 1 2 3 20 20 H 1.09000 * 109.47403 * 54.67504 * 1 2 3 21 21 H 1.09005 * 109.47549 * 174.67825 * 1 2 3 22 22 H 1.09000 * 109.46759 * 187.67167 * 3 2 1 23 23 H 1.09004 * 109.47280 * 307.67038 * 3 2 1 24 24 H 1.08997 * 109.46956 * 67.67536 * 3 2 1 25 25 H 1.09002 * 109.46791 * 278.58580 * 4 2 1 26 26 H 1.08998 * 109.47287 * 38.58823 * 4 2 1 27 27 H 1.09002 * 109.46854 * 158.59415 * 4 2 1 28 28 H 1.08992 * 113.48135 * 253.47234 * 6 5 2 29 29 H 1.09004 * 113.47561 * 23.88448 * 6 5 2 30 30 H 1.09000 * 114.17029 * 87.62679 * 7 6 5 31 31 H 1.09002 * 114.16798 * 220.13843 * 7 6 5 32 32 H 1.08993 * 109.47403 * 46.86459 * 10 8 5 33 33 H 1.09002 * 109.46839 * 166.86481 * 10 8 5 34 34 H 0.97001 * 120.00239 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2494 5 7 2.0197 -0.6926 1.1993 6 6 1.3600 -2.0018 1.3600 7 6 2.7246 -2.5773 1.7642 8 6 3.2706 -1.4204 0.9157 9 1 3.3956 -1.6751 -0.1367 10 6 4.5114 -0.7568 1.5163 11 6 4.8464 0.4854 0.7315 12 1 4.6940 0.5062 -0.3375 13 6 5.3476 1.5951 1.3781 14 7 5.5329 1.5700 2.6799 15 14 5.7621 3.1351 0.4054 16 1 5.4643 2.9080 -1.0315 17 1 4.9479 4.2714 0.9066 18 1 7.2043 3.4500 0.5678 19 1 -0.3633 0.4291 0.9338 20 1 -0.3634 0.5942 -0.8384 21 1 -0.3634 -1.0233 -0.0953 22 1 3.1213 1.4455 -0.1372 23 1 1.5690 1.9944 -0.8135 24 1 1.7930 1.9151 0.9506 25 1 2.0163 -1.7981 -1.0823 26 1 1.4037 -0.4712 -2.0983 27 1 3.0631 -0.4082 -1.4574 28 1 0.6248 -2.0218 2.1644 29 1 0.9743 -2.4112 0.4263 30 1 2.9467 -2.4941 2.8281 31 1 2.9291 -3.5679 1.3580 32 1 4.3137 -0.4885 2.5541 33 1 5.3510 -1.4507 1.4740 34 1 5.8852 2.3509 3.1349 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259941740.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:47 Heat of formation + Delta-G solvation = 36.218381 kcal Electronic energy + Delta-G solvation = -13679.748010 eV Core-core repulsion = 11613.969161 eV Total energy + Delta-G solvation = -2065.778849 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.15158 -34.36240 -32.95079 -29.29303 -27.05329 -26.72513 -26.23705 -24.35700 -21.29693 -19.64311 -17.78269 -16.34597 -15.56100 -14.69419 -14.26496 -13.84630 -13.26611 -12.80287 -12.39233 -12.36540 -11.99459 -11.48551 -11.31351 -11.14784 -11.02627 -10.92451 -10.54503 -10.47500 -10.40155 -10.10516 -9.85274 -9.54001 -9.03120 -8.76747 -8.29189 -7.77260 -5.90818 -3.87650 3.33664 3.42177 3.43596 4.50626 4.75535 5.24999 5.38757 5.42287 5.50779 5.60543 5.69747 5.90606 6.01399 6.08820 6.10762 6.19826 6.23480 6.38326 6.40701 6.56408 6.60126 6.71584 6.82486 6.87895 7.14987 7.24403 7.53682 7.75497 7.85524 8.01528 8.22235 8.52972 9.18168 9.69895 11.20310 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.037379 B = 0.014273 C = 0.011745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.908635 B = 1961.221013 C = 2383.374822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.078 3.922 3 C -0.146 4.146 4 C -0.173 4.173 5 N -0.438 5.438 6 C -0.011 4.011 7 C -0.153 4.153 8 C 0.031 3.969 9 H 0.075 0.925 10 C 0.023 3.977 11 C -0.499 4.499 12 H 0.052 0.948 13 C 0.065 3.935 14 N -0.891 5.891 15 Si 0.876 3.124 16 H -0.273 1.273 17 H -0.283 1.283 18 H -0.286 1.286 19 H 0.058 0.942 20 H 0.051 0.949 21 H 0.047 0.953 22 H 0.100 0.900 23 H 0.031 0.969 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.046 0.954 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.057 0.943 30 H 0.085 0.915 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.003 0.997 34 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.806 -4.721 -4.908 10.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.012 4.012 3 C -0.203 4.203 4 C -0.231 4.231 5 N -0.161 5.161 6 C -0.140 4.140 7 C -0.191 4.191 8 C -0.078 4.078 9 H 0.093 0.907 10 C -0.014 4.014 11 C -0.537 4.537 12 H 0.070 0.930 13 C -0.136 4.136 14 N -0.531 5.531 15 Si 0.704 3.296 16 H -0.197 1.197 17 H -0.209 1.209 18 H -0.212 1.212 19 H 0.077 0.923 20 H 0.070 0.930 21 H 0.066 0.934 22 H 0.118 0.882 23 H 0.050 0.950 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.065 0.935 27 H 0.089 0.911 28 H 0.088 0.912 29 H 0.075 0.925 30 H 0.104 0.896 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.021 0.979 34 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -7.796 -4.056 -4.252 9.763 hybrid contribution 0.117 0.458 -1.237 1.324 sum -7.679 -3.599 -5.489 10.102 Atomic orbital electron populations 1.21986 0.95559 1.00775 1.01612 1.21331 0.93443 0.96697 0.89747 1.22103 1.05262 0.93002 0.99977 1.22534 1.02365 1.00025 0.98192 1.69278 1.03609 1.12252 1.30913 1.23713 0.97265 0.93246 0.99815 1.23267 0.96523 0.97759 1.01583 1.23849 0.94253 0.91391 0.98297 0.90702 1.19180 0.89281 0.94098 0.98859 1.21008 1.41237 0.98022 0.93463 0.93030 1.24896 0.95805 0.98214 0.94645 1.69932 1.45808 1.29656 1.07681 0.86809 0.78047 0.84261 0.80498 1.19739 1.20929 1.21203 0.92330 0.92969 0.93374 0.88162 0.95007 0.92765 0.92832 0.93457 0.91126 0.91181 0.92521 0.89593 0.92352 0.92550 0.97935 0.93218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 7.91 37.16 0.29 -1.91 16 2 C 0.08 1.45 0.80 -131.60 -0.10 1.34 16 3 C -0.15 -3.03 8.47 37.16 0.31 -2.71 16 4 C -0.17 -2.95 7.08 37.16 0.26 -2.69 16 5 N -0.44 -8.93 5.97 -220.82 -1.32 -10.25 16 6 C -0.01 -0.19 6.23 -7.54 -0.05 -0.23 16 7 C -0.15 -2.73 8.01 -26.20 -0.21 -2.94 16 8 C 0.03 0.65 2.56 -71.43 -0.18 0.46 16 9 H 0.08 1.53 4.65 -51.93 -0.24 1.28 16 10 C 0.02 0.59 5.44 -27.88 -0.15 0.44 16 11 C -0.50 -13.56 6.50 -34.44 -0.22 -13.79 16 12 H 0.05 1.38 6.11 -52.48 -0.32 1.06 16 13 C 0.07 1.84 5.41 -17.82 -0.10 1.75 16 14 N -0.89 -26.61 12.78 55.43 0.71 -25.90 16 15 Si 0.88 21.53 29.11 -169.99 -4.95 16.58 16 16 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 17 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 18 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 19 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 20 H 0.05 0.73 8.13 -51.93 -0.42 0.31 16 21 H 0.05 0.68 6.67 -51.93 -0.35 0.33 16 22 H 0.10 2.36 3.75 -51.93 -0.19 2.16 16 23 H 0.03 0.57 8.13 -51.93 -0.42 0.15 16 24 H 0.05 1.19 8.14 -51.93 -0.42 0.76 16 25 H 0.05 0.86 5.37 -51.93 -0.28 0.58 16 26 H 0.05 0.70 7.96 -51.93 -0.41 0.29 16 27 H 0.07 1.33 6.42 -51.93 -0.33 1.00 16 28 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.06 0.87 5.77 -51.93 -0.30 0.57 16 30 H 0.09 1.59 8.12 -51.93 -0.42 1.17 16 31 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 32 H 0.06 1.62 7.27 -51.93 -0.38 1.24 16 33 H 0.00 0.07 8.14 -51.93 -0.42 -0.36 16 34 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 254.96 15.07 3.84 3.84 Total: -1.00 -28.87 254.96 -7.18 -36.05 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: -5.32 Total: -0.05 kcal Atomic # 6 Polarization: -20.14 SS G_CDS: -0.14 Total: -20.28 kcal Atomic # 7 Polarization: -35.54 SS G_CDS: -0.61 Total: -36.15 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.95 Total: 16.58 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -28.87 -7.18 -36.05 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259941740.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.271 kcal (2) G-P(sol) polarization free energy of solvation -28.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.053 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds