Wall clock time and date at job start Mon Mar 30 2020 02:25:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46975 * 2 1 4 4 C 1.53004 * 109.46692 * 240.00416 * 2 1 3 5 5 N 1.46897 * 109.47212 * 120.00547 * 2 1 3 6 6 C 1.47481 * 111.00132 * 49.91308 * 5 2 1 7 7 C 1.53514 * 87.92823 * 138.70521 * 6 5 2 8 8 C 1.47475 * 111.00191 * 145.88920 * 5 2 1 9 9 H 1.09000 * 113.47333 * 336.06084 * 8 5 2 10 10 C 1.52998 * 113.47627 * 106.52742 * 8 5 2 11 11 C 1.50698 * 109.47140 * 286.86322 * 10 8 5 12 12 H 1.08007 * 119.99905 * 324.09143 * 11 10 8 13 13 C 1.37875 * 120.00142 * 144.09943 * 11 10 8 14 14 N 1.31515 * 120.00166 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 120.00175 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.46921 * 359.97438 * 15 13 11 17 17 H 1.48504 * 109.47365 * 119.99325 * 15 13 11 18 18 H 1.48499 * 109.47260 * 239.99556 * 15 13 11 19 19 H 1.09004 * 109.47029 * 294.67877 * 1 2 3 20 20 H 1.09000 * 109.47403 * 54.67504 * 1 2 3 21 21 H 1.09005 * 109.47549 * 174.67825 * 1 2 3 22 22 H 1.09000 * 109.46759 * 187.67167 * 3 2 1 23 23 H 1.09004 * 109.47280 * 307.67038 * 3 2 1 24 24 H 1.08997 * 109.46956 * 67.67536 * 3 2 1 25 25 H 1.09002 * 109.46791 * 278.58580 * 4 2 1 26 26 H 1.08998 * 109.47287 * 38.58823 * 4 2 1 27 27 H 1.09002 * 109.46854 * 158.59415 * 4 2 1 28 28 H 1.08992 * 113.48135 * 253.47234 * 6 5 2 29 29 H 1.09004 * 113.47561 * 23.88448 * 6 5 2 30 30 H 1.09000 * 114.17029 * 87.62679 * 7 6 5 31 31 H 1.09002 * 114.16798 * 220.13843 * 7 6 5 32 32 H 1.08993 * 109.47403 * 46.86459 * 10 8 5 33 33 H 1.09002 * 109.46839 * 166.86481 * 10 8 5 34 34 H 0.97001 * 120.00239 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2494 5 7 2.0197 -0.6926 1.1993 6 6 1.3600 -2.0018 1.3600 7 6 2.7246 -2.5773 1.7642 8 6 3.2706 -1.4204 0.9157 9 1 3.3956 -1.6751 -0.1367 10 6 4.5114 -0.7568 1.5163 11 6 4.8464 0.4854 0.7315 12 1 4.6940 0.5062 -0.3375 13 6 5.3476 1.5951 1.3781 14 7 5.5329 1.5700 2.6799 15 14 5.7621 3.1351 0.4054 16 1 5.4643 2.9080 -1.0315 17 1 4.9479 4.2714 0.9066 18 1 7.2043 3.4500 0.5678 19 1 -0.3633 0.4291 0.9338 20 1 -0.3634 0.5942 -0.8384 21 1 -0.3634 -1.0233 -0.0953 22 1 3.1213 1.4455 -0.1372 23 1 1.5690 1.9944 -0.8135 24 1 1.7930 1.9151 0.9506 25 1 2.0163 -1.7981 -1.0823 26 1 1.4037 -0.4712 -2.0983 27 1 3.0631 -0.4082 -1.4574 28 1 0.6248 -2.0218 2.1644 29 1 0.9743 -2.4112 0.4263 30 1 2.9467 -2.4941 2.8281 31 1 2.9291 -3.5679 1.3580 32 1 4.3137 -0.4885 2.5541 33 1 5.3510 -1.4507 1.4740 34 1 5.8852 2.3509 3.1349 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259941740.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:46 Heat of formation + Delta-G solvation = 16.802030 kcal Electronic energy + Delta-G solvation = -13680.589966 eV Core-core repulsion = 11613.969161 eV Total energy + Delta-G solvation = -2066.620805 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.64308 -35.82699 -35.04641 -31.23216 -28.42741 -28.14535 -27.80585 -26.24403 -23.04289 -21.14241 -19.28592 -18.40828 -17.08262 -16.62687 -15.83759 -15.37631 -14.77947 -14.38088 -14.21038 -13.79622 -13.54958 -13.18244 -12.99559 -12.93399 -12.58146 -12.43197 -12.30010 -12.18645 -11.91874 -11.65217 -11.48383 -11.13418 -10.95831 -10.65848 -10.43531 -9.27450 -8.07718 -6.08992 1.36617 1.38875 1.48385 2.44099 3.23392 3.33940 3.82099 4.04362 4.09248 4.24568 4.34065 4.60895 4.62789 4.70902 4.76685 4.81380 4.90349 5.02386 5.06174 5.11630 5.16022 5.20902 5.26073 5.35638 5.47023 5.59579 5.66287 5.79120 5.90628 6.07008 6.36217 6.65864 7.03648 7.51422 9.04373 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.037379 B = 0.014273 C = 0.011745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.908635 B = 1961.221013 C = 2383.374822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.071 3.929 3 C -0.145 4.145 4 C -0.166 4.166 5 N -0.474 5.474 6 C 0.003 3.997 7 C -0.146 4.146 8 C 0.029 3.971 9 H 0.086 0.914 10 C 0.024 3.976 11 C -0.493 4.493 12 H 0.055 0.945 13 C 0.012 3.988 14 N -0.933 5.933 15 Si 0.935 3.065 16 H -0.259 1.259 17 H -0.284 1.284 18 H -0.283 1.283 19 H 0.048 0.952 20 H 0.069 0.931 21 H 0.068 0.932 22 H 0.069 0.931 23 H 0.055 0.945 24 H 0.028 0.972 25 H 0.066 0.934 26 H 0.072 0.928 27 H 0.045 0.955 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.070 0.930 31 H 0.087 0.913 32 H 0.016 0.984 33 H -0.010 1.010 34 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.461 -5.489 -6.752 12.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.018 4.018 3 C -0.202 4.202 4 C -0.224 4.224 5 N -0.197 5.197 6 C -0.126 4.126 7 C -0.184 4.184 8 C -0.080 4.080 9 H 0.104 0.896 10 C -0.014 4.014 11 C -0.531 4.531 12 H 0.073 0.927 13 C -0.185 4.185 14 N -0.575 5.575 15 Si 0.761 3.239 16 H -0.183 1.183 17 H -0.210 1.210 18 H -0.210 1.210 19 H 0.067 0.933 20 H 0.088 0.912 21 H 0.087 0.913 22 H 0.087 0.913 23 H 0.074 0.926 24 H 0.047 0.953 25 H 0.085 0.915 26 H 0.091 0.909 27 H 0.064 0.936 28 H 0.099 0.901 29 H 0.101 0.899 30 H 0.089 0.911 31 H 0.106 0.894 32 H 0.035 0.965 33 H 0.008 0.992 34 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -9.459 -4.835 -6.115 12.258 hybrid contribution 0.632 0.677 -0.656 1.135 sum -8.827 -4.158 -6.772 11.877 Atomic orbital electron populations 1.21911 0.92881 1.02401 1.01942 1.21422 0.95505 0.95062 0.89860 1.22040 1.03439 0.95276 0.99454 1.22426 1.01269 1.00494 0.98228 1.69182 1.03780 1.14320 1.32404 1.23706 0.96682 0.90902 1.01271 1.23202 0.96809 0.98089 1.00280 1.23709 0.92638 0.92666 0.99018 0.89644 1.19083 0.91500 0.93934 0.96855 1.21273 1.39769 0.98451 0.93655 0.92699 1.25624 0.96129 1.01337 0.95401 1.70076 1.47585 1.30475 1.09369 0.85865 0.77646 0.80598 0.79813 1.18314 1.21003 1.20955 0.93285 0.91168 0.91317 0.91256 0.92572 0.95320 0.91536 0.90896 0.93641 0.90103 0.89932 0.91117 0.89436 0.96492 0.99184 0.93423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.68 7.91 71.98 0.57 -3.11 16 2 C 0.07 2.49 0.80 3.53 0.00 2.49 16 3 C -0.14 -5.87 8.47 71.98 0.61 -5.26 16 4 C -0.17 -5.14 7.08 71.98 0.51 -4.63 16 5 N -0.47 -18.71 5.97 -852.55 -5.09 -23.80 16 6 C 0.00 0.09 6.23 83.58 0.52 0.61 16 7 C -0.15 -4.92 8.01 30.94 0.25 -4.68 16 8 C 0.03 1.18 2.56 42.19 0.11 1.28 16 9 H 0.09 3.33 4.65 -2.39 -0.01 3.32 16 10 C 0.02 1.26 5.44 29.85 0.16 1.42 16 11 C -0.49 -27.29 6.50 25.60 0.17 -27.12 16 12 H 0.05 2.95 6.11 -2.91 -0.02 2.94 16 13 C 0.01 0.69 5.41 84.65 0.46 1.15 16 14 N -0.93 -57.66 12.78 21.45 0.27 -57.38 16 15 Si 0.93 44.89 29.11 68.60 2.00 46.89 16 16 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 17 H -0.28 -13.56 7.11 99.48 0.71 -12.86 16 18 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 19 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 20 H 0.07 1.68 8.13 -2.39 -0.02 1.66 16 21 H 0.07 1.61 6.67 -2.38 -0.02 1.59 16 22 H 0.07 3.24 3.75 -2.39 -0.01 3.23 16 23 H 0.06 1.92 8.13 -2.38 -0.02 1.90 16 24 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 25 H 0.07 1.87 5.37 -2.39 -0.01 1.86 16 26 H 0.07 1.87 7.96 -2.39 -0.02 1.85 16 27 H 0.04 1.63 6.42 -2.39 -0.02 1.61 16 28 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 29 H 0.08 2.12 5.77 -2.39 -0.01 2.11 16 30 H 0.07 2.59 8.12 -2.39 -0.02 2.57 16 31 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 32 H 0.02 1.00 7.27 -2.39 -0.02 0.98 16 33 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 34 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 Total: -1.00 -63.60 254.96 1.60 -62.00 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: 1.06 Total: 10.14 kcal Atomic # 6 Polarization: -41.20 SS G_CDS: 3.35 Total: -37.84 kcal Atomic # 7 Polarization: -76.37 SS G_CDS: -4.82 Total: -81.19 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.00 Total: 46.89 kcal Total: -63.60 1.60 -62.00 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259941740.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.803 kcal (2) G-P(sol) polarization free energy of solvation -63.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.001 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds