Wall clock time and date at job start Mon Mar 30 2020 02:19:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47109 * 2 1 4 4 C 1.53000 * 109.46811 * 179.97438 * 3 2 1 5 5 H 1.08998 * 109.52583 * 54.87570 * 4 3 2 6 6 C 1.53127 * 109.52391 * 294.68313 * 4 3 2 7 7 C 1.53038 * 109.27941 * 182.44285 * 6 4 3 8 8 N 1.46830 * 109.51757 * 59.17550 * 7 6 4 9 9 C 1.46847 * 111.21086 * 298.25173 * 8 7 6 10 10 C 1.53044 * 109.51335 * 61.74856 * 9 8 7 11 11 H 1.09001 * 109.49858 * 60.76701 * 10 9 8 12 12 C 1.50701 * 109.49955 * 180.84551 * 10 9 8 13 13 H 1.07991 * 119.99887 * 120.00170 * 12 10 9 14 14 C 1.37877 * 120.00095 * 299.99805 * 12 10 9 15 15 N 1.31523 * 120.00030 * 0.02562 * 14 12 10 16 16 Si 1.86793 * 120.00172 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.47511 * 89.99968 * 16 14 12 18 18 H 1.48505 * 109.47269 * 209.99875 * 16 14 12 19 19 H 1.48497 * 109.47090 * 329.99826 * 16 14 12 20 20 H 1.08992 * 109.47335 * 179.97438 * 1 2 3 21 21 H 1.09000 * 109.47004 * 300.00276 * 1 2 3 22 22 H 1.08997 * 109.46772 * 59.99940 * 1 2 3 23 23 H 1.09000 * 109.47004 * 239.99724 * 2 1 3 24 24 H 1.08997 * 109.46772 * 120.00060 * 2 1 3 25 25 H 1.09000 * 109.47414 * 59.99975 * 3 2 1 26 26 H 1.08997 * 109.47353 * 299.99704 * 3 2 1 27 27 H 1.08997 * 109.50037 * 302.38237 * 6 4 3 28 28 H 1.09000 * 109.49970 * 62.49898 * 6 4 3 29 29 H 1.08995 * 109.46433 * 179.19502 * 7 6 4 30 30 H 1.09004 * 109.46006 * 299.16206 * 7 6 4 31 31 H 1.00904 * 110.98205 * 174.15538 * 8 7 6 32 32 H 1.09002 * 109.46448 * 301.73578 * 9 8 7 33 33 H 1.08994 * 109.45958 * 181.75943 * 9 8 7 34 34 H 0.96993 * 119.99957 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9347 0.8512 -0.8393 6 6 4.0812 0.8399 1.3123 7 6 5.6103 0.8983 1.3331 8 7 6.0496 2.2940 1.2107 9 6 5.6110 2.8793 -0.0627 10 6 4.0818 2.8800 -0.1251 11 1 3.6846 3.4807 0.6931 12 6 3.6323 3.4617 -1.4407 13 1 3.0382 2.8674 -2.1189 14 6 3.9797 4.7525 -1.7783 15 7 4.7037 5.4762 -0.9525 16 14 3.4220 5.4738 -3.4087 17 1 2.1059 6.1386 -3.2316 18 1 4.4200 6.4687 -3.8771 19 1 3.2966 4.3875 -4.4134 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 1.8934 -0.5139 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 1.6767 1.9563 0.8900 26 1 1.6768 1.9563 -0.8900 27 1 3.6838 1.4084 2.1531 28 1 3.7555 -0.1976 1.3874 29 1 5.9769 0.4831 2.2719 30 1 6.0073 0.3181 0.5000 31 1 7.0503 2.3685 1.3173 32 1 6.0079 2.2899 -0.8892 33 1 5.9780 3.9028 -0.1374 34 1 4.9477 6.3844 -1.1899 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259951593.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:53 Heat of formation + Delta-G solvation = -31.554524 kcal Electronic energy + Delta-G solvation = -13213.235059 eV Core-core repulsion = 11144.517357 eV Total energy + Delta-G solvation = -2068.717702 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -38.06484 -34.50470 -32.97334 -30.87993 -29.42164 -26.18035 -24.60329 -22.17391 -21.23168 -19.91662 -18.51465 -16.51655 -15.29012 -14.54315 -14.39599 -13.64937 -13.43310 -12.98957 -12.75664 -12.64737 -12.00452 -11.77454 -11.33396 -11.07632 -10.93042 -10.65316 -10.63114 -10.28299 -10.20625 -10.00454 -9.79029 -9.50052 -8.75402 -8.62375 -8.30785 -7.44781 -5.94545 -4.00265 3.32114 3.39085 3.41987 4.46189 5.16068 5.39498 5.42577 5.46510 5.62326 5.71897 5.85803 5.98219 6.13170 6.22772 6.24317 6.33715 6.46344 6.52224 6.58114 6.75488 6.79890 6.86479 7.08708 7.16206 7.23664 7.28155 7.74712 7.88670 8.05712 8.24846 8.35102 8.57384 9.04717 9.63907 11.11205 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.026019 B = 0.013972 C = 0.009559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.862180 B = 2003.581646 C = 2928.335997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.126 4.126 3 C -0.104 4.104 4 C -0.079 4.079 5 H 0.049 0.951 6 C -0.110 4.110 7 C 0.062 3.938 8 N -0.694 5.694 9 C 0.062 3.938 10 C 0.060 3.940 11 H 0.033 0.967 12 C -0.509 4.509 13 H 0.056 0.944 14 C 0.060 3.940 15 N -0.889 5.889 16 Si 0.887 3.113 17 H -0.281 1.281 18 H -0.288 1.288 19 H -0.275 1.275 20 H 0.044 0.956 21 H 0.050 0.950 22 H 0.052 0.948 23 H 0.053 0.947 24 H 0.055 0.945 25 H 0.051 0.949 26 H 0.071 0.929 27 H 0.061 0.939 28 H 0.048 0.952 29 H 0.054 0.946 30 H 0.015 0.985 31 H 0.322 0.678 32 H 0.000 1.000 33 H 0.103 0.897 34 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.004 -8.184 2.363 8.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.164 4.164 3 C -0.142 4.142 4 C -0.098 4.098 5 H 0.067 0.933 6 C -0.148 4.148 7 C -0.068 4.068 8 N -0.324 5.324 9 C -0.066 4.066 10 C 0.041 3.959 11 H 0.051 0.949 12 C -0.548 4.548 13 H 0.075 0.925 14 C -0.141 4.141 15 N -0.528 5.528 16 Si 0.716 3.284 17 H -0.207 1.207 18 H -0.213 1.213 19 H -0.200 1.200 20 H 0.063 0.937 21 H 0.069 0.931 22 H 0.071 0.929 23 H 0.072 0.928 24 H 0.073 0.927 25 H 0.070 0.930 26 H 0.089 0.911 27 H 0.080 0.920 28 H 0.067 0.933 29 H 0.072 0.928 30 H 0.033 0.967 31 H 0.137 0.863 32 H 0.018 0.982 33 H 0.121 0.879 34 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -2.464 -7.753 2.720 8.578 hybrid contribution 0.405 0.004 -1.560 1.611 sum -2.059 -7.748 1.161 8.101 Atomic orbital electron populations 1.21773 0.96862 1.00450 1.01647 1.21633 0.94898 0.98794 1.01055 1.21554 0.96044 0.94292 1.02283 1.21252 0.94228 0.99486 0.94844 0.93258 1.21680 0.94563 0.99087 0.99476 1.21816 0.96494 0.90148 0.98358 1.60501 1.16584 1.16400 1.38932 1.22281 0.99479 0.99971 0.84831 1.18673 0.90579 0.89693 0.96915 0.94900 1.21217 1.32553 0.97847 1.03193 0.92542 1.24996 0.95196 0.97144 0.96727 1.69884 1.37668 1.09462 1.35778 0.86668 0.78430 0.78961 0.84383 1.20733 1.21343 1.20039 0.93726 0.93062 0.92922 0.92799 0.92667 0.93003 0.91073 0.92048 0.93299 0.92763 0.96694 0.86271 0.98192 0.87933 0.93072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.91 37.16 0.37 -1.67 16 2 C -0.13 -1.97 5.70 -26.73 -0.15 -2.12 16 3 C -0.10 -2.00 4.55 -26.73 -0.12 -2.12 16 4 C -0.08 -1.67 1.71 -90.49 -0.15 -1.82 16 5 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 6 C -0.11 -2.04 5.08 -26.65 -0.14 -2.18 16 7 C 0.06 1.13 6.55 -3.84 -0.03 1.10 16 8 N -0.69 -14.41 6.84 -113.83 -0.78 -15.19 16 9 C 0.06 1.52 5.60 -3.83 -0.02 1.50 16 10 C 0.06 1.52 1.77 -91.69 -0.16 1.35 16 11 H 0.03 0.93 8.14 -51.93 -0.42 0.51 16 12 C -0.51 -13.86 7.79 -34.44 -0.27 -14.13 16 13 H 0.06 1.52 6.90 -52.49 -0.36 1.16 16 14 C 0.06 1.67 5.30 -17.82 -0.09 1.57 16 15 N -0.89 -25.48 11.33 55.43 0.63 -24.85 16 16 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 17 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 18 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 20 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 21 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 22 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 23 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 24 H 0.05 0.81 6.63 -51.93 -0.34 0.47 16 25 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 26 H 0.07 1.48 6.65 -51.93 -0.35 1.14 16 27 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 28 H 0.05 0.79 6.70 -51.93 -0.35 0.44 16 29 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.32 5.91 8.90 -39.29 -0.35 5.56 16 32 H 0.00 -0.01 8.14 -51.93 -0.42 -0.43 16 33 H 0.10 2.78 6.09 -51.93 -0.32 2.47 16 34 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 262.74 15.07 3.96 3.96 Total: -1.00 -27.98 262.74 -7.83 -35.81 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -5.85 Total: 2.49 kcal Atomic # 6 Polarization: -17.74 SS G_CDS: -0.77 Total: -18.51 kcal Atomic # 7 Polarization: -39.89 SS G_CDS: -0.15 Total: -40.04 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -27.98 -7.83 -35.81 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259951593.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.260 kcal (2) G-P(sol) polarization free energy of solvation -27.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds