Wall clock time and date at job start Mon Mar 30 2020 02:19:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47109 * 2 1 4 4 C 1.53000 * 109.46811 * 179.97438 * 3 2 1 5 5 H 1.08998 * 109.52583 * 54.87570 * 4 3 2 6 6 C 1.53127 * 109.52391 * 294.68313 * 4 3 2 7 7 C 1.53038 * 109.27941 * 182.44285 * 6 4 3 8 8 N 1.46830 * 109.51757 * 59.17550 * 7 6 4 9 9 C 1.46847 * 111.21086 * 298.25173 * 8 7 6 10 10 C 1.53044 * 109.51335 * 61.74856 * 9 8 7 11 11 H 1.09001 * 109.49858 * 60.76701 * 10 9 8 12 12 C 1.50701 * 109.49955 * 180.84551 * 10 9 8 13 13 H 1.07991 * 119.99887 * 120.00170 * 12 10 9 14 14 C 1.37877 * 120.00095 * 299.99805 * 12 10 9 15 15 N 1.31523 * 120.00030 * 0.02562 * 14 12 10 16 16 Si 1.86793 * 120.00172 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.47511 * 89.99968 * 16 14 12 18 18 H 1.48505 * 109.47269 * 209.99875 * 16 14 12 19 19 H 1.48497 * 109.47090 * 329.99826 * 16 14 12 20 20 H 1.08992 * 109.47335 * 179.97438 * 1 2 3 21 21 H 1.09000 * 109.47004 * 300.00276 * 1 2 3 22 22 H 1.08997 * 109.46772 * 59.99940 * 1 2 3 23 23 H 1.09000 * 109.47004 * 239.99724 * 2 1 3 24 24 H 1.08997 * 109.46772 * 120.00060 * 2 1 3 25 25 H 1.09000 * 109.47414 * 59.99975 * 3 2 1 26 26 H 1.08997 * 109.47353 * 299.99704 * 3 2 1 27 27 H 1.08997 * 109.50037 * 302.38237 * 6 4 3 28 28 H 1.09000 * 109.49970 * 62.49898 * 6 4 3 29 29 H 1.08995 * 109.46433 * 179.19502 * 7 6 4 30 30 H 1.09004 * 109.46006 * 299.16206 * 7 6 4 31 31 H 1.00904 * 110.98205 * 174.15538 * 8 7 6 32 32 H 1.09002 * 109.46448 * 301.73578 * 9 8 7 33 33 H 1.08994 * 109.45958 * 181.75943 * 9 8 7 34 34 H 0.96993 * 119.99957 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9347 0.8512 -0.8393 6 6 4.0812 0.8399 1.3123 7 6 5.6103 0.8983 1.3331 8 7 6.0496 2.2940 1.2107 9 6 5.6110 2.8793 -0.0627 10 6 4.0818 2.8800 -0.1251 11 1 3.6846 3.4807 0.6931 12 6 3.6323 3.4617 -1.4407 13 1 3.0382 2.8674 -2.1189 14 6 3.9797 4.7525 -1.7783 15 7 4.7037 5.4762 -0.9525 16 14 3.4220 5.4738 -3.4087 17 1 2.1059 6.1386 -3.2316 18 1 4.4200 6.4687 -3.8771 19 1 3.2966 4.3875 -4.4134 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 1.8934 -0.5139 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 1.6767 1.9563 0.8900 26 1 1.6768 1.9563 -0.8900 27 1 3.6838 1.4084 2.1531 28 1 3.7555 -0.1976 1.3874 29 1 5.9769 0.4831 2.2719 30 1 6.0073 0.3181 0.5000 31 1 7.0503 2.3685 1.3173 32 1 6.0079 2.2899 -0.8892 33 1 5.9780 3.9028 -0.1374 34 1 4.9477 6.3844 -1.1899 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259951593.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:51 Heat of formation + Delta-G solvation = -49.111256 kcal Electronic energy + Delta-G solvation = -13213.996377 eV Core-core repulsion = 11144.517357 eV Total energy + Delta-G solvation = -2069.479020 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 2.07 seconds Orbital eigenvalues (eV) -39.76416 -35.96808 -34.98887 -32.41471 -31.24698 -27.74204 -26.54677 -23.72728 -22.88487 -21.43879 -20.28669 -18.54227 -17.11169 -16.31095 -15.91807 -15.25954 -14.94832 -14.66662 -14.33728 -14.30922 -13.71779 -13.34289 -12.90132 -12.71755 -12.53734 -12.41909 -12.18434 -12.11229 -11.81769 -11.64018 -11.41481 -11.25483 -10.60643 -10.48538 -10.35388 -9.15327 -8.06218 -6.19377 1.40400 1.41292 1.51052 2.43825 3.18123 3.63932 4.04344 4.10245 4.26022 4.35799 4.46218 4.53990 4.67344 4.83561 4.88703 4.92485 5.02396 5.07924 5.13748 5.15778 5.27207 5.34534 5.44492 5.46544 5.54102 5.63574 5.68774 6.00599 6.07567 6.25839 6.55087 6.75509 6.94541 7.48193 8.98262 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.026019 B = 0.013972 C = 0.009559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.862180 B = 2003.581646 C = 2928.335997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 C -0.100 4.100 4 C -0.076 4.076 5 H 0.042 0.958 6 C -0.106 4.106 7 C 0.059 3.941 8 N -0.701 5.701 9 C 0.075 3.925 10 C 0.059 3.941 11 H -0.009 1.009 12 C -0.524 4.524 13 H 0.054 0.946 14 C 0.011 3.989 15 N -0.917 5.917 16 Si 0.950 3.050 17 H -0.277 1.277 18 H -0.284 1.284 19 H -0.269 1.269 20 H 0.068 0.932 21 H 0.053 0.947 22 H 0.045 0.955 23 H 0.056 0.944 24 H 0.071 0.929 25 H 0.043 0.957 26 H 0.045 0.955 27 H 0.052 0.948 28 H 0.083 0.917 29 H 0.088 0.912 30 H 0.021 0.979 31 H 0.336 0.664 32 H -0.010 1.010 33 H 0.070 0.930 34 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.455 -9.955 2.455 10.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.156 4.156 3 C -0.137 4.137 4 C -0.095 4.095 5 H 0.061 0.939 6 C -0.143 4.143 7 C -0.070 4.070 8 N -0.332 5.332 9 C -0.054 4.054 10 C 0.040 3.960 11 H 0.010 0.990 12 C -0.563 4.563 13 H 0.072 0.928 14 C -0.187 4.187 15 N -0.557 5.557 16 Si 0.776 3.224 17 H -0.203 1.203 18 H -0.210 1.210 19 H -0.193 1.193 20 H 0.087 0.913 21 H 0.072 0.928 22 H 0.065 0.935 23 H 0.075 0.925 24 H 0.089 0.911 25 H 0.062 0.938 26 H 0.064 0.936 27 H 0.071 0.929 28 H 0.101 0.899 29 H 0.106 0.894 30 H 0.039 0.961 31 H 0.153 0.847 32 H 0.008 0.992 33 H 0.088 0.912 34 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -2.913 -9.539 2.820 10.365 hybrid contribution 0.562 0.558 -1.548 1.738 sum -2.351 -8.982 1.272 9.371 Atomic orbital electron populations 1.21755 0.95291 1.01997 1.01514 1.21558 0.96286 0.95847 1.01916 1.21470 0.94821 0.96829 1.00616 1.21160 0.95468 0.96594 0.96273 0.93921 1.21660 0.94807 1.00635 0.97220 1.21961 0.96289 0.88450 1.00313 1.60389 1.17848 1.18447 1.36539 1.21898 0.98834 0.98331 0.86304 1.18605 0.91145 0.91807 0.94452 0.99038 1.21535 1.32429 0.98262 1.04047 0.92811 1.25756 0.95337 0.97639 0.99993 1.70030 1.38592 1.09624 1.37437 0.85681 0.78002 0.78241 0.80498 1.20281 1.20991 1.19322 0.91307 0.92836 0.93536 0.92538 0.91075 0.93822 0.93618 0.92945 0.89864 0.89355 0.96124 0.84673 0.99155 0.91207 0.93149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.67 9.91 71.98 0.71 -2.96 16 2 C -0.12 -3.41 5.70 30.59 0.17 -3.24 16 3 C -0.10 -3.78 4.55 30.59 0.14 -3.64 16 4 C -0.08 -3.17 1.71 -10.71 -0.02 -3.19 16 5 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 6 C -0.11 -3.67 5.08 30.65 0.16 -3.52 16 7 C 0.06 2.00 6.55 86.33 0.57 2.57 16 8 N -0.70 -28.63 6.84 -514.04 -3.52 -32.15 16 9 C 0.08 3.75 5.60 86.33 0.48 4.24 16 10 C 0.06 3.04 1.77 -11.49 -0.02 3.02 16 11 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 12 C -0.52 -29.22 7.79 25.60 0.20 -29.02 16 13 H 0.05 2.95 6.90 -2.92 -0.02 2.93 16 14 C 0.01 0.62 5.30 84.65 0.45 1.07 16 15 N -0.92 -54.07 11.33 21.45 0.24 -53.83 16 16 Si 0.95 44.26 29.54 68.60 2.03 46.29 16 17 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 18 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 19 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 20 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 21 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 22 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 23 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 24 H 0.07 1.83 6.63 -2.39 -0.02 1.82 16 25 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 26 H 0.05 1.93 6.65 -2.39 -0.02 1.92 16 27 H 0.05 1.92 8.14 -2.39 -0.02 1.91 16 28 H 0.08 2.35 6.70 -2.39 -0.02 2.33 16 29 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 30 H 0.02 0.69 8.14 -2.38 -0.02 0.67 16 31 H 0.34 12.01 8.90 -89.69 -0.80 11.21 16 32 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 33 H 0.07 3.93 6.09 -2.39 -0.01 3.91 16 34 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 Total: -1.00 -61.13 262.74 1.85 -59.29 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: 0.26 Total: 15.08 kcal Atomic # 6 Polarization: -37.52 SS G_CDS: 2.84 Total: -34.68 kcal Atomic # 7 Polarization: -82.70 SS G_CDS: -3.28 Total: -85.98 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Total: -61.13 1.85 -59.29 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259951593.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.174 kcal (2) G-P(sol) polarization free energy of solvation -61.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.07 seconds