Wall clock time and date at job start Mon Mar 30 2020 02:19:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47191 * 2 1 4 4 C 1.53002 * 109.46858 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.52613 * 305.12949 * 4 3 2 6 6 C 1.53119 * 109.57277 * 65.28554 * 4 3 2 7 7 C 1.53041 * 109.27895 * 177.58944 * 6 4 3 8 8 N 1.46846 * 109.52183 * 300.81882 * 7 6 4 9 9 C 1.46852 * 111.19706 * 61.74093 * 8 7 6 10 10 C 1.53032 * 109.52486 * 298.26007 * 9 8 7 11 11 H 1.09005 * 109.53435 * 299.21694 * 10 9 8 12 12 C 1.50694 * 109.50373 * 179.12044 * 10 9 8 13 13 H 1.08002 * 120.00179 * 240.19183 * 12 10 9 14 14 C 1.37879 * 120.00472 * 60.19500 * 12 10 9 15 15 N 1.31514 * 119.99350 * 359.97438 * 14 12 10 16 16 Si 1.86798 * 120.00608 * 179.97438 * 14 12 10 17 17 H 1.48493 * 109.47326 * 270.00340 * 16 14 12 18 18 H 1.48506 * 109.46545 * 30.00090 * 16 14 12 19 19 H 1.48498 * 109.47210 * 149.99801 * 16 14 12 20 20 H 1.08998 * 109.47266 * 300.00314 * 1 2 3 21 21 H 1.09001 * 109.46525 * 60.00238 * 1 2 3 22 22 H 1.08999 * 109.47513 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47266 * 239.99686 * 2 1 3 24 24 H 1.09009 * 109.46841 * 119.99798 * 2 1 3 25 25 H 1.08997 * 109.47266 * 60.00245 * 3 2 1 26 26 H 1.08996 * 109.46903 * 299.99688 * 3 2 1 27 27 H 1.09006 * 109.50590 * 297.52641 * 6 4 3 28 28 H 1.09005 * 109.50662 * 57.64966 * 6 4 3 29 29 H 1.08992 * 109.46265 * 60.83685 * 7 6 4 30 30 H 1.09000 * 109.46321 * 180.81678 * 7 6 4 31 31 H 1.00900 * 111.00352 * 185.83465 * 8 7 6 32 32 H 1.08999 * 109.46203 * 178.23946 * 9 8 7 33 33 H 1.09004 * 109.45860 * 58.27465 * 9 8 7 34 34 H 0.97005 * 119.99661 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9340 0.8514 0.8411 6 6 4.0835 0.8390 -1.3096 7 6 5.6127 0.8972 -1.3276 8 7 6.0521 2.2930 -1.2054 9 6 5.6109 2.8792 0.0667 10 6 4.0818 2.8801 0.1264 11 1 3.6854 3.4804 -0.6926 12 6 3.6299 3.4618 1.4410 13 1 3.0370 2.8665 2.1197 14 6 3.9733 4.7540 1.7776 15 7 4.6956 5.4787 0.9514 16 14 3.4125 5.4754 3.4069 17 1 2.0947 6.1361 3.2284 18 1 3.2898 4.3897 4.4127 19 1 4.4075 6.4735 3.8749 20 1 -0.3634 0.5139 0.8899 21 1 -0.3632 0.5138 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 1.8933 -0.5139 -0.8899 24 1 1.8933 -0.5139 0.8901 25 1 1.6768 1.9563 0.8900 26 1 1.6767 1.9563 -0.8900 27 1 3.7580 -0.1986 -1.3847 28 1 3.6878 1.4070 -2.1516 29 1 6.0080 0.3176 -0.4935 30 1 5.9810 0.4815 -2.2656 31 1 7.0529 2.3676 -1.3100 32 1 5.9780 3.9028 0.1416 33 1 6.0064 2.2902 0.8944 34 1 4.9369 6.3880 1.1880 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259951608.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:55 Heat of formation + Delta-G solvation = -49.164671 kcal Electronic energy + Delta-G solvation = -13213.835348 eV Core-core repulsion = 11144.354013 eV Total energy + Delta-G solvation = -2069.481336 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.76354 -35.96689 -34.98849 -32.41480 -31.24866 -27.74155 -26.54624 -23.72673 -22.88554 -21.43843 -20.28604 -18.54181 -17.11131 -16.31117 -15.91766 -15.25932 -14.94845 -14.66599 -14.33749 -14.30919 -13.71683 -13.34307 -12.90158 -12.71760 -12.53795 -12.41975 -12.18463 -12.11326 -11.81654 -11.63975 -11.41501 -11.25391 -10.60550 -10.48589 -10.35456 -9.15379 -8.06290 -6.19345 1.40416 1.41280 1.51039 2.43829 3.18176 3.63851 4.04350 4.10281 4.26002 4.35803 4.46211 4.53978 4.67342 4.83522 4.88692 4.92511 5.02404 5.07890 5.13745 5.15775 5.27135 5.34514 5.44462 5.46540 5.54116 5.63577 5.68798 6.00558 6.07509 6.25649 6.55047 6.75500 6.94552 7.48208 8.98272 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.026000 B = 0.013979 C = 0.009561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.659908 B = 2002.530562 C = 2927.725597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 C -0.100 4.100 4 C -0.076 4.076 5 H 0.042 0.958 6 C -0.106 4.106 7 C 0.059 3.941 8 N -0.701 5.701 9 C 0.076 3.924 10 C 0.059 3.941 11 H -0.008 1.008 12 C -0.524 4.524 13 H 0.054 0.946 14 C 0.011 3.989 15 N -0.917 5.917 16 Si 0.950 3.050 17 H -0.277 1.277 18 H -0.269 1.269 19 H -0.284 1.284 20 H 0.045 0.955 21 H 0.052 0.948 22 H 0.068 0.932 23 H 0.071 0.929 24 H 0.056 0.944 25 H 0.045 0.955 26 H 0.043 0.957 27 H 0.083 0.917 28 H 0.052 0.948 29 H 0.021 0.979 30 H 0.088 0.912 31 H 0.336 0.664 32 H 0.069 0.931 33 H -0.010 1.010 34 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.441 -9.962 -2.448 10.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.156 4.156 3 C -0.137 4.137 4 C -0.095 4.095 5 H 0.061 0.939 6 C -0.143 4.143 7 C -0.070 4.070 8 N -0.332 5.332 9 C -0.053 4.053 10 C 0.040 3.960 11 H 0.010 0.990 12 C -0.563 4.563 13 H 0.072 0.928 14 C -0.187 4.187 15 N -0.557 5.557 16 Si 0.776 3.224 17 H -0.203 1.203 18 H -0.193 1.193 19 H -0.210 1.210 20 H 0.065 0.935 21 H 0.072 0.928 22 H 0.087 0.913 23 H 0.089 0.911 24 H 0.075 0.925 25 H 0.064 0.936 26 H 0.062 0.938 27 H 0.101 0.899 28 H 0.071 0.929 29 H 0.039 0.961 30 H 0.106 0.894 31 H 0.153 0.847 32 H 0.087 0.913 33 H 0.009 0.991 34 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -2.899 -9.547 -2.814 10.367 hybrid contribution 0.559 0.560 1.549 1.739 sum -2.340 -8.988 -1.265 9.373 Atomic orbital electron populations 1.21755 0.95292 1.01997 1.01513 1.21559 0.96285 0.95848 1.01914 1.21469 0.94817 0.96827 1.00618 1.21160 0.95463 0.96590 0.96279 0.93928 1.21661 0.94800 1.00632 0.97234 1.21964 0.96291 0.88445 1.00311 1.60392 1.17772 1.18422 1.36643 1.21894 0.98824 0.98299 0.86330 1.18601 0.91135 0.91809 0.94459 0.99029 1.21535 1.32505 0.98149 1.04090 0.92815 1.25756 0.95342 0.97644 0.99980 1.70034 1.38690 1.09521 1.37434 0.85682 0.78010 0.78238 0.80501 1.20280 1.19321 1.20990 0.93536 0.92838 0.91306 0.91076 0.92539 0.93616 0.93820 0.89865 0.92948 0.96115 0.89355 0.84667 0.91251 0.99142 0.93152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.67 9.91 71.98 0.71 -2.96 16 2 C -0.12 -3.41 5.70 30.59 0.17 -3.24 16 3 C -0.10 -3.78 4.55 30.60 0.14 -3.64 16 4 C -0.08 -3.17 1.70 -10.71 -0.02 -3.19 16 5 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 6 C -0.11 -3.67 5.08 30.65 0.16 -3.52 16 7 C 0.06 2.00 6.55 86.33 0.57 2.57 16 8 N -0.70 -28.62 6.85 -514.00 -3.52 -32.14 16 9 C 0.08 3.76 5.60 86.32 0.48 4.24 16 10 C 0.06 3.04 1.77 -11.49 -0.02 3.02 16 11 H -0.01 -0.50 8.14 -2.38 -0.02 -0.52 16 12 C -0.52 -29.23 7.78 25.60 0.20 -29.03 16 13 H 0.05 2.95 6.90 -2.91 -0.02 2.93 16 14 C 0.01 0.63 5.30 84.66 0.45 1.08 16 15 N -0.92 -54.08 11.34 21.45 0.24 -53.84 16 16 Si 0.95 44.26 29.54 68.60 2.03 46.29 16 17 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 18 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 19 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 20 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 21 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 22 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 23 H 0.07 1.83 6.64 -2.39 -0.02 1.82 16 24 H 0.06 1.60 8.14 -2.38 -0.02 1.58 16 25 H 0.05 1.93 6.65 -2.39 -0.02 1.92 16 26 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 27 H 0.08 2.35 6.71 -2.38 -0.02 2.33 16 28 H 0.05 1.92 8.14 -2.38 -0.02 1.90 16 29 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 31 H 0.34 12.00 8.90 -89.69 -0.80 11.20 16 32 H 0.07 3.90 6.11 -2.39 -0.01 3.89 16 33 H -0.01 -0.49 8.14 -2.38 -0.02 -0.51 16 34 H 0.26 14.57 8.31 -92.70 -0.77 13.80 16 Total: -1.00 -61.14 262.77 1.85 -59.29 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: 0.26 Total: 15.06 kcal Atomic # 6 Polarization: -37.51 SS G_CDS: 2.84 Total: -34.67 kcal Atomic # 7 Polarization: -82.70 SS G_CDS: -3.28 Total: -85.97 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Total: -61.14 1.85 -59.29 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259951608.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.128 kcal (2) G-P(sol) polarization free energy of solvation -61.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds