Wall clock time and date at job start Mon Mar 30 2020 02:20:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.52997 * 109.47127 * 180.02562 * 3 2 1 5 5 H 1.09004 * 109.52707 * 304.99692 * 4 3 2 6 6 C 1.53117 * 109.52570 * 65.12369 * 4 3 2 7 7 C 1.53039 * 109.28190 * 177.56219 * 6 4 3 8 8 N 1.46846 * 109.51872 * 300.82103 * 7 6 4 9 9 C 1.46846 * 111.20051 * 61.73912 * 8 7 6 10 10 C 1.53036 * 109.57598 * 298.29230 * 9 8 7 11 11 H 1.09004 * 109.55926 * 179.05582 * 10 9 8 12 12 C 1.50699 * 109.45236 * 299.16957 * 10 9 8 13 13 H 1.08001 * 119.99991 * 119.77083 * 12 10 9 14 14 C 1.37874 * 120.00449 * 299.77196 * 12 10 9 15 15 N 1.31520 * 119.99900 * 359.97438 * 14 12 10 16 16 Si 1.86797 * 120.00292 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47276 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47339 * 120.00175 * 16 14 12 19 19 H 1.48507 * 109.47028 * 239.99743 * 16 14 12 20 20 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 21 21 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 22 22 H 1.08996 * 109.46952 * 300.00302 * 1 2 3 23 23 H 1.09001 * 109.47502 * 240.00157 * 2 1 3 24 24 H 1.09001 * 109.47289 * 119.99953 * 2 1 3 25 25 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 26 26 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 27 27 H 1.08999 * 109.50684 * 297.50020 * 6 4 3 28 28 H 1.09003 * 109.50512 * 57.57958 * 6 4 3 29 29 H 1.08990 * 109.46358 * 60.83443 * 7 6 4 30 30 H 1.08994 * 109.46291 * 180.81728 * 7 6 4 31 31 H 1.00905 * 111.00065 * 185.84379 * 8 7 6 32 32 H 1.08998 * 109.45778 * 58.27398 * 9 8 7 33 33 H 1.08997 * 109.46400 * 178.25023 * 9 8 7 34 34 H 0.97002 * 120.00271 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 3.9347 0.8532 0.8407 6 6 4.0812 0.8357 -1.3102 7 6 5.6103 0.8940 -1.3311 8 7 6.0497 2.2902 -1.2134 9 6 5.6108 2.8797 0.0579 10 6 4.0818 2.8804 0.1219 11 1 3.7565 3.3027 1.0727 12 6 3.5324 3.7083 -1.0112 13 1 2.8832 3.2551 -1.7457 14 6 3.8586 5.0442 -1.1102 15 7 4.6488 5.5963 -0.2155 16 14 3.1770 6.0705 -2.5143 17 1 2.3195 5.2200 -3.3783 18 1 2.3707 7.1894 -1.9637 19 1 4.2997 6.6181 -3.3176 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8899 23 1 1.8934 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 1.6767 1.9564 -0.8900 26 1 1.6767 1.9563 0.8899 27 1 3.7557 -0.2021 -1.3819 28 1 3.6833 1.4009 -2.1530 29 1 6.0072 0.3168 -0.4962 30 1 5.9769 0.4759 -2.2686 31 1 7.0504 2.3646 -1.3202 32 1 6.0078 2.2931 0.8863 33 1 5.9776 3.9036 0.1293 34 1 4.8786 6.5361 -0.2853 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259951622.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:00 Heat of formation + Delta-G solvation = -24.841905 kcal Electronic energy + Delta-G solvation = -13374.547270 eV Core-core repulsion = 11306.120648 eV Total energy + Delta-G solvation = -2068.426621 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 1.73 seconds Orbital eigenvalues (eV) -38.11191 -34.47528 -32.61412 -30.84633 -29.26370 -26.16250 -24.51780 -22.17359 -21.42411 -19.91486 -18.53714 -15.71675 -15.45868 -14.62425 -14.40004 -13.58599 -13.19528 -13.01321 -12.74570 -12.62263 -11.89106 -11.65785 -11.17707 -10.97428 -10.84981 -10.72953 -10.52820 -10.49180 -10.10074 -9.94174 -9.80675 -9.20904 -8.72516 -8.62237 -8.15165 -7.18509 -5.80573 -3.79557 3.41482 3.49182 3.52757 4.60845 5.32593 5.40561 5.45748 5.55357 5.63792 5.79694 5.95639 6.06809 6.15860 6.23387 6.27426 6.37936 6.46284 6.57428 6.61937 6.68175 6.79166 6.99230 7.09130 7.14586 7.24127 7.35356 7.71964 7.83214 8.20928 8.28966 8.51122 8.69728 9.16601 9.81585 11.27683 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.028146 B = 0.014102 C = 0.010916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.585426 B = 1985.023773 C = 2564.481906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.127 4.127 3 C -0.102 4.102 4 C -0.079 4.079 5 H 0.035 0.965 6 C -0.101 4.101 7 C 0.065 3.935 8 N -0.666 5.666 9 C 0.067 3.933 10 C 0.051 3.949 11 H 0.026 0.974 12 C -0.467 4.467 13 H 0.055 0.945 14 C 0.059 3.941 15 N -0.902 5.902 16 Si 0.887 3.113 17 H -0.276 1.276 18 H -0.290 1.290 19 H -0.288 1.288 20 H 0.052 0.948 21 H 0.043 0.957 22 H 0.050 0.950 23 H 0.057 0.943 24 H 0.050 0.950 25 H 0.069 0.931 26 H 0.052 0.948 27 H 0.040 0.960 28 H 0.074 0.926 29 H 0.006 0.994 30 H 0.053 0.947 31 H 0.317 0.683 32 H -0.022 1.022 33 H 0.103 0.897 34 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.993 -8.624 -0.116 8.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.165 4.165 3 C -0.139 4.139 4 C -0.097 4.097 5 H 0.053 0.947 6 C -0.138 4.138 7 C -0.065 4.065 8 N -0.295 5.295 9 C -0.062 4.062 10 C 0.032 3.968 11 H 0.044 0.956 12 C -0.505 4.505 13 H 0.073 0.927 14 C -0.139 4.139 15 N -0.543 5.543 16 Si 0.716 3.284 17 H -0.201 1.201 18 H -0.217 1.217 19 H -0.214 1.214 20 H 0.071 0.929 21 H 0.063 0.937 22 H 0.069 0.931 23 H 0.076 0.924 24 H 0.069 0.931 25 H 0.088 0.912 26 H 0.071 0.929 27 H 0.059 0.941 28 H 0.093 0.907 29 H 0.024 0.976 30 H 0.071 0.929 31 H 0.133 0.867 32 H -0.004 1.004 33 H 0.121 0.879 34 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -2.473 -8.205 -0.430 8.581 hybrid contribution 0.396 0.189 -0.129 0.457 sum -2.077 -8.016 -0.559 8.300 Atomic orbital electron populations 1.21771 0.96852 1.00431 1.01666 1.21650 0.94913 0.98871 1.01034 1.21533 0.95983 0.94058 1.02363 1.21193 0.94300 0.98965 0.95259 0.94693 1.21544 0.94413 0.98080 0.99780 1.21793 0.96702 0.90079 0.97887 1.60160 1.15621 1.15579 1.38172 1.22117 0.99382 0.99574 0.85079 1.18798 0.90816 0.89695 0.97450 0.95590 1.20969 1.26888 0.93226 1.09409 0.92697 1.24847 0.95403 0.97938 0.95736 1.69832 1.37077 1.11976 1.35396 0.86622 0.78579 0.80250 0.82924 1.20095 1.21678 1.21407 0.92891 0.93746 0.93080 0.92417 0.93111 0.91199 0.92891 0.94135 0.90691 0.97569 0.92888 0.86701 1.00420 0.87920 0.93546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 9.91 37.16 0.37 -1.66 16 2 C -0.13 -1.96 5.69 -26.73 -0.15 -2.11 16 3 C -0.10 -1.93 4.30 -26.73 -0.11 -2.05 16 4 C -0.08 -1.63 2.01 -90.50 -0.18 -1.81 16 5 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 6 C -0.10 -1.96 4.81 -26.65 -0.13 -2.09 16 7 C 0.07 1.25 6.55 -3.83 -0.03 1.22 16 8 N -0.67 -14.52 6.45 -113.83 -0.73 -15.26 16 9 C 0.07 1.62 5.78 -3.83 -0.02 1.60 16 10 C 0.05 1.27 2.17 -91.70 -0.20 1.07 16 11 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 12 C -0.47 -12.55 6.81 -34.44 -0.23 -12.78 16 13 H 0.05 1.49 5.69 -52.49 -0.30 1.19 16 14 C 0.06 1.66 5.30 -17.82 -0.09 1.56 16 15 N -0.90 -25.94 11.33 55.43 0.63 -25.31 16 16 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 17 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 18 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 19 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 20 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 21 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 22 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 23 H 0.06 0.87 6.63 -51.93 -0.34 0.53 16 24 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.07 1.43 6.66 -51.93 -0.35 1.09 16 26 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 27 H 0.04 0.69 6.70 -51.93 -0.35 0.34 16 28 H 0.07 1.62 6.83 -51.93 -0.35 1.26 16 29 H 0.01 0.11 8.14 -51.93 -0.42 -0.31 16 30 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 31 H 0.32 6.18 8.90 -39.29 -0.35 5.83 16 32 H -0.02 -0.51 8.14 -51.93 -0.42 -0.93 16 33 H 0.10 2.76 6.07 -51.93 -0.32 2.45 16 34 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 259.18 15.07 3.91 3.91 Total: -1.00 -28.16 259.18 -7.72 -35.89 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: -5.72 Total: 0.91 kcal Atomic # 6 Polarization: -16.27 SS G_CDS: -0.78 Total: -17.06 kcal Atomic # 7 Polarization: -40.46 SS G_CDS: -0.11 Total: -40.57 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -28.16 -7.72 -35.89 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259951622.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.044 kcal (2) G-P(sol) polarization free energy of solvation -28.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.73 seconds