Wall clock time and date at job start Mon Mar 30 2020 02:19:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.52997 * 109.47127 * 180.02562 * 3 2 1 5 5 H 1.09004 * 109.52707 * 304.99692 * 4 3 2 6 6 C 1.53117 * 109.52570 * 65.12369 * 4 3 2 7 7 C 1.53039 * 109.28190 * 177.56219 * 6 4 3 8 8 N 1.46846 * 109.51872 * 300.82103 * 7 6 4 9 9 C 1.46846 * 111.20051 * 61.73912 * 8 7 6 10 10 C 1.53036 * 109.57598 * 298.29230 * 9 8 7 11 11 H 1.09004 * 109.55926 * 179.05582 * 10 9 8 12 12 C 1.50699 * 109.45236 * 299.16957 * 10 9 8 13 13 H 1.08001 * 119.99991 * 119.77083 * 12 10 9 14 14 C 1.37874 * 120.00449 * 299.77196 * 12 10 9 15 15 N 1.31520 * 119.99900 * 359.97438 * 14 12 10 16 16 Si 1.86797 * 120.00292 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47276 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47339 * 120.00175 * 16 14 12 19 19 H 1.48507 * 109.47028 * 239.99743 * 16 14 12 20 20 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 21 21 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 22 22 H 1.08996 * 109.46952 * 300.00302 * 1 2 3 23 23 H 1.09001 * 109.47502 * 240.00157 * 2 1 3 24 24 H 1.09001 * 109.47289 * 119.99953 * 2 1 3 25 25 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 26 26 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 27 27 H 1.08999 * 109.50684 * 297.50020 * 6 4 3 28 28 H 1.09003 * 109.50512 * 57.57958 * 6 4 3 29 29 H 1.08990 * 109.46358 * 60.83443 * 7 6 4 30 30 H 1.08994 * 109.46291 * 180.81728 * 7 6 4 31 31 H 1.00905 * 111.00065 * 185.84379 * 8 7 6 32 32 H 1.08998 * 109.45778 * 58.27398 * 9 8 7 33 33 H 1.08997 * 109.46400 * 178.25023 * 9 8 7 34 34 H 0.97002 * 120.00271 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 3.9347 0.8532 0.8407 6 6 4.0812 0.8357 -1.3102 7 6 5.6103 0.8940 -1.3311 8 7 6.0497 2.2902 -1.2134 9 6 5.6108 2.8797 0.0579 10 6 4.0818 2.8804 0.1219 11 1 3.7565 3.3027 1.0727 12 6 3.5324 3.7083 -1.0112 13 1 2.8832 3.2551 -1.7457 14 6 3.8586 5.0442 -1.1102 15 7 4.6488 5.5963 -0.2155 16 14 3.1770 6.0705 -2.5143 17 1 2.3195 5.2200 -3.3783 18 1 2.3707 7.1894 -1.9637 19 1 4.2997 6.6181 -3.3176 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8899 23 1 1.8934 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 1.6767 1.9564 -0.8900 26 1 1.6767 1.9563 0.8899 27 1 3.7557 -0.2021 -1.3819 28 1 3.6833 1.4009 -2.1530 29 1 6.0072 0.3168 -0.4962 30 1 5.9769 0.4759 -2.2686 31 1 7.0504 2.3646 -1.3202 32 1 6.0078 2.2931 0.8863 33 1 5.9776 3.9036 0.1293 34 1 4.8786 6.5361 -0.2853 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259951622.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:58 Heat of formation + Delta-G solvation = -42.257441 kcal Electronic energy + Delta-G solvation = -13375.302464 eV Core-core repulsion = 11306.120648 eV Total energy + Delta-G solvation = -2069.181816 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 1.93 seconds Orbital eigenvalues (eV) -39.82052 -35.93197 -34.63411 -32.38396 -31.07698 -27.73514 -26.49390 -23.72269 -23.03071 -21.41876 -20.39830 -17.68394 -17.23819 -16.45692 -15.91704 -15.13209 -14.88879 -14.66976 -14.29715 -14.20285 -13.54208 -13.29066 -12.86467 -12.61848 -12.54315 -12.38912 -12.36219 -12.00067 -11.78344 -11.66000 -11.42173 -10.88836 -10.59222 -10.48070 -10.22955 -8.90139 -7.93251 -5.97310 1.42978 1.46011 1.55104 2.54149 3.37703 3.70144 4.08742 4.11922 4.30854 4.39325 4.51700 4.58731 4.69601 4.83169 4.92564 4.93350 5.03410 5.07451 5.13200 5.16958 5.31745 5.42653 5.45552 5.51265 5.61486 5.70458 5.73794 5.86034 6.16918 6.42723 6.69170 6.88902 7.06972 7.65846 9.13688 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.028146 B = 0.014102 C = 0.010916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.585426 B = 1985.023773 C = 2564.481906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 C -0.097 4.097 4 C -0.076 4.076 5 H 0.043 0.957 6 C -0.096 4.096 7 C 0.064 3.936 8 N -0.682 5.682 9 C 0.076 3.924 10 C 0.045 3.955 11 H -0.011 1.011 12 C -0.464 4.464 13 H 0.051 0.949 14 C 0.010 3.990 15 N -0.928 5.928 16 Si 0.942 3.058 17 H -0.270 1.270 18 H -0.289 1.289 19 H -0.289 1.289 20 H 0.048 0.952 21 H 0.067 0.933 22 H 0.049 0.951 23 H 0.066 0.934 24 H 0.061 0.939 25 H 0.049 0.951 26 H 0.038 0.962 27 H 0.074 0.926 28 H 0.051 0.949 29 H 0.020 0.980 30 H 0.079 0.921 31 H 0.330 0.670 32 H -0.015 1.015 33 H 0.069 0.931 34 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.427 -10.508 -0.961 10.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.157 4.157 3 C -0.135 4.135 4 C -0.094 4.094 5 H 0.061 0.939 6 C -0.133 4.133 7 C -0.066 4.066 8 N -0.312 5.312 9 C -0.053 4.053 10 C 0.026 3.974 11 H 0.007 0.993 12 C -0.503 4.503 13 H 0.069 0.931 14 C -0.186 4.186 15 N -0.570 5.570 16 Si 0.770 3.230 17 H -0.194 1.194 18 H -0.215 1.215 19 H -0.216 1.216 20 H 0.067 0.933 21 H 0.086 0.914 22 H 0.068 0.932 23 H 0.085 0.915 24 H 0.079 0.921 25 H 0.068 0.932 26 H 0.057 0.943 27 H 0.093 0.907 28 H 0.070 0.930 29 H 0.038 0.962 30 H 0.097 0.903 31 H 0.147 0.853 32 H 0.003 0.997 33 H 0.087 0.913 34 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -2.909 -10.103 -1.284 10.591 hybrid contribution 0.543 0.760 0.163 0.948 sum -2.367 -9.343 -1.120 9.703 Atomic orbital electron populations 1.21755 0.95394 1.01941 1.01488 1.21571 0.96209 0.95971 1.01932 1.21448 0.94848 0.96552 1.00634 1.21129 0.95445 0.96285 0.96579 0.93880 1.21508 0.94741 0.99466 0.97625 1.21903 0.96369 0.88523 0.99773 1.60057 1.16801 1.17684 1.36700 1.21806 0.98666 0.98184 0.86651 1.18782 0.91598 0.92109 0.94896 0.99261 1.21163 1.26160 0.93474 1.09480 0.93133 1.25520 0.96037 0.99225 0.97817 1.69975 1.38268 1.11976 1.36821 0.85752 0.77891 0.78873 0.80495 1.19441 1.21516 1.21561 0.93265 0.91366 0.93183 0.91512 0.92073 0.93248 0.94319 0.90747 0.93029 0.96170 0.90284 0.85285 0.99694 0.91252 0.93831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.63 9.91 71.98 0.71 -2.92 16 2 C -0.12 -3.36 5.69 30.60 0.17 -3.19 16 3 C -0.10 -3.61 4.30 30.60 0.13 -3.48 16 4 C -0.08 -3.06 2.01 -10.72 -0.02 -3.09 16 5 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 6 C -0.10 -3.50 4.81 30.65 0.15 -3.35 16 7 C 0.06 2.24 6.55 86.33 0.57 2.81 16 8 N -0.68 -28.95 6.45 -514.03 -3.32 -32.26 16 9 C 0.08 3.70 5.78 86.33 0.50 4.20 16 10 C 0.04 2.26 2.17 -11.49 -0.02 2.23 16 11 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 12 C -0.46 -25.27 6.81 25.60 0.17 -25.10 16 13 H 0.05 2.75 5.69 -2.91 -0.02 2.74 16 14 C 0.01 0.56 5.30 84.65 0.45 1.01 16 15 N -0.93 -54.69 11.33 21.45 0.24 -54.45 16 16 Si 0.94 45.44 29.54 68.60 2.03 47.46 16 17 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 18 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 19 H -0.29 -13.94 7.11 99.48 0.71 -13.24 16 20 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 21 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 22 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 23 H 0.07 1.77 6.63 -2.39 -0.02 1.75 16 24 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 25 H 0.05 2.01 6.66 -2.39 -0.02 2.00 16 26 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 27 H 0.07 2.23 6.70 -2.39 -0.02 2.21 16 28 H 0.05 2.13 6.83 -2.39 -0.02 2.12 16 29 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 31 H 0.33 12.44 8.90 -89.69 -0.80 11.64 16 32 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 33 H 0.07 3.83 6.07 -2.39 -0.01 3.82 16 34 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 Total: -1.00 -60.31 259.18 2.02 -58.28 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: 0.26 Total: 11.83 kcal Atomic # 6 Polarization: -33.68 SS G_CDS: 2.81 Total: -30.87 kcal Atomic # 7 Polarization: -83.64 SS G_CDS: -3.07 Total: -86.71 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.46 kcal Total: -60.31 2.02 -58.28 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259951622.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.027 kcal (2) G-P(sol) polarization free energy of solvation -60.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.93 seconds