Wall clock time and date at job start Mon Mar 30 2020 02:20:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52992 * 109.47080 * 2 1 4 4 C 1.53003 * 109.47013 * 119.99610 * 2 1 3 5 5 H 1.09002 * 109.57447 * 300.15881 * 4 2 1 6 6 C 1.53123 * 109.52073 * 60.31613 * 4 2 1 7 7 C 1.53039 * 109.27423 * 177.55732 * 6 4 2 8 8 N 1.46845 * 109.52696 * 300.82396 * 7 6 4 9 9 C 1.46846 * 111.19892 * 61.74137 * 8 7 6 10 10 C 1.53034 * 109.52248 * 298.26152 * 9 8 7 11 11 H 1.08999 * 109.50091 * 179.15945 * 10 9 8 12 12 C 1.50697 * 109.50263 * 299.23515 * 10 9 8 13 13 H 1.07999 * 120.00141 * 95.21767 * 12 10 9 14 14 C 1.37884 * 120.00378 * 275.21707 * 12 10 9 15 15 N 1.31519 * 119.99559 * 355.14917 * 14 12 10 16 16 Si 1.86789 * 120.00333 * 175.14899 * 14 12 10 17 17 H 1.48507 * 109.47184 * 60.00123 * 16 14 12 18 18 H 1.48508 * 109.47370 * 300.00166 * 16 14 12 19 19 H 1.48495 * 109.47431 * 180.02562 * 16 14 12 20 20 H 1.08998 * 109.47201 * 300.00267 * 1 2 3 21 21 H 1.09000 * 109.47126 * 60.00160 * 1 2 3 22 22 H 1.09009 * 109.47150 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47201 * 239.99733 * 2 1 3 24 24 H 1.08996 * 109.47672 * 179.97438 * 3 2 1 25 25 H 1.09000 * 109.47011 * 299.99911 * 3 2 1 26 26 H 1.09003 * 109.47752 * 59.99992 * 3 2 1 27 27 H 1.08997 * 109.50049 * 57.62093 * 6 4 2 28 28 H 1.08994 * 109.53868 * 297.51612 * 6 4 2 29 29 H 1.08997 * 109.46093 * 180.80606 * 7 6 4 30 30 H 1.09002 * 109.45484 * 60.83841 * 7 6 4 31 31 H 1.00897 * 111.00399 * 185.84500 * 8 7 6 32 32 H 1.09003 * 109.46100 * 178.24384 * 9 8 7 33 33 H 1.08999 * 109.46144 * 58.27938 * 9 8 7 34 34 H 0.97008 * 120.00079 * 5.17095 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6752 -0.2102 2.1404 6 6 1.5367 -2.1673 1.2466 7 6 2.0997 -2.9005 2.4663 8 7 3.5672 -2.8739 2.4208 9 6 4.0751 -1.4969 2.4701 10 6 3.5711 -0.7219 1.2506 11 1 3.9360 0.3042 1.2953 12 6 4.0750 -1.3807 -0.0076 13 1 3.4537 -2.0929 -0.5303 14 6 5.3292 -1.0743 -0.4916 15 7 6.0475 -0.1382 0.0893 16 14 6.0080 -1.9886 -1.9722 17 1 5.1123 -1.7775 -3.1378 18 1 6.0868 -3.4394 -1.6648 19 1 7.3649 -1.4764 -2.2909 20 1 -0.3633 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 1.8933 -0.5139 -0.8899 24 1 3.1299 1.4425 0.0005 25 1 1.6766 1.9562 -0.8900 26 1 1.6767 1.9564 0.8900 27 1 1.8691 -2.6666 0.3365 28 1 0.4476 -2.1744 1.2885 29 1 1.7548 -3.9344 2.4596 30 1 1.7555 -2.4088 3.3762 31 1 3.9622 -3.4318 3.1628 32 1 5.1650 -1.5115 2.4662 33 1 3.7218 -1.0119 3.3801 34 1 5.7278 0.2843 0.9019 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259954436.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:05 Heat of formation + Delta-G solvation = -43.060687 kcal Electronic energy + Delta-G solvation = -13664.863051 eV Core-core repulsion = 11595.646404 eV Total energy + Delta-G solvation = -2069.216647 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -40.18642 -36.20262 -34.87944 -31.38484 -31.05374 -27.92883 -26.32803 -24.71842 -23.25422 -21.06459 -20.65128 -17.86204 -17.57711 -15.80480 -15.59381 -15.23983 -15.20235 -14.87889 -14.53771 -14.24048 -13.49013 -13.06697 -12.82088 -12.81407 -12.63198 -12.43331 -12.20955 -12.04059 -11.91515 -11.75216 -11.37699 -10.82707 -10.54831 -10.39605 -10.14686 -9.06065 -8.34780 -5.98143 1.56138 1.64394 1.81140 2.68394 3.40741 3.54091 3.99503 4.06376 4.20672 4.43671 4.45779 4.49986 4.66980 4.74622 4.75284 4.82085 4.89252 4.95133 5.06123 5.08055 5.20691 5.24667 5.33792 5.46454 5.48246 5.64644 5.73251 5.82570 6.26427 6.46321 6.49728 6.74043 6.94059 7.73212 9.04083 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.028210 B = 0.016155 C = 0.012884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.318298 B = 1732.785507 C = 2172.665726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.079 4.079 3 C -0.134 4.134 4 C -0.063 4.063 5 H 0.041 0.959 6 C -0.101 4.101 7 C 0.065 3.935 8 N -0.683 5.683 9 C 0.079 3.921 10 C 0.027 3.973 11 H 0.007 0.993 12 C -0.528 4.528 13 H 0.041 0.959 14 C -0.040 4.040 15 N -0.956 5.956 16 Si 1.101 2.899 17 H -0.276 1.276 18 H -0.280 1.280 19 H -0.294 1.294 20 H 0.056 0.944 21 H 0.057 0.943 22 H 0.060 0.940 23 H 0.051 0.949 24 H 0.027 0.973 25 H 0.055 0.945 26 H 0.052 0.948 27 H 0.051 0.949 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.024 0.976 31 H 0.336 0.664 32 H 0.030 0.970 33 H 0.001 0.999 34 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.309 -2.549 2.665 10.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.098 4.098 3 C -0.192 4.192 4 C -0.082 4.082 5 H 0.059 0.941 6 C -0.139 4.139 7 C -0.064 4.064 8 N -0.314 5.314 9 C -0.051 4.051 10 C 0.008 3.992 11 H 0.025 0.975 12 C -0.567 4.567 13 H 0.059 0.941 14 C -0.235 4.235 15 N -0.597 5.597 16 Si 0.926 3.074 17 H -0.202 1.202 18 H -0.206 1.206 19 H -0.220 1.220 20 H 0.075 0.925 21 H 0.076 0.924 22 H 0.079 0.921 23 H 0.070 0.930 24 H 0.046 0.954 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.095 0.905 29 H 0.101 0.899 30 H 0.042 0.958 31 H 0.153 0.847 32 H 0.048 0.952 33 H 0.019 0.981 34 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -9.017 -2.662 0.927 9.448 hybrid contribution -0.800 0.479 2.119 2.315 sum -9.817 -2.183 3.046 10.508 Atomic orbital electron populations 1.21842 0.94116 1.01901 1.01642 1.20929 0.95508 0.95264 0.98055 1.21704 0.99943 0.96699 1.00822 1.21053 0.95652 0.95407 0.96090 0.94079 1.21579 0.98990 0.95112 0.98197 1.21900 0.87461 1.00400 0.96619 1.60011 1.07379 1.12088 1.51925 1.21875 0.97384 0.89359 0.96441 1.19012 0.92804 0.93831 0.93527 0.97491 1.21844 1.01467 1.24409 1.08945 0.94066 1.26740 0.95262 0.96634 1.04900 1.70925 1.42244 1.25664 1.20891 0.83109 0.75398 0.75213 0.73631 1.20191 1.20554 1.22027 0.92495 0.92397 0.92077 0.93015 0.95386 0.92598 0.92927 0.93022 0.90511 0.89859 0.95793 0.84712 0.95163 0.98149 0.93689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.92 8.85 71.98 0.64 -3.28 16 2 C -0.08 -2.96 2.23 -10.80 -0.02 -2.99 16 3 C -0.13 -5.10 8.84 71.98 0.64 -4.46 16 4 C -0.06 -2.52 1.62 -10.71 -0.02 -2.53 16 5 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 6 C -0.10 -3.60 4.70 30.65 0.14 -3.46 16 7 C 0.07 2.18 6.55 86.33 0.57 2.74 16 8 N -0.68 -27.17 6.45 -514.01 -3.32 -30.49 16 9 C 0.08 3.62 5.98 86.32 0.52 4.13 16 10 C 0.03 1.32 1.46 -11.49 -0.02 1.30 16 11 H 0.01 0.39 5.11 -2.39 -0.01 0.37 16 12 C -0.53 -28.55 6.31 25.60 0.16 -28.39 16 13 H 0.04 2.27 6.07 -2.91 -0.02 2.25 16 14 C -0.04 -2.28 5.45 84.66 0.46 -1.82 16 15 N -0.96 -58.89 13.63 21.45 0.29 -58.60 16 16 Si 1.10 52.36 29.91 68.60 2.05 54.41 16 17 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 18 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 19 H -0.29 -14.22 7.11 99.48 0.71 -13.52 16 20 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 21 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 22 H 0.06 1.61 6.50 -2.38 -0.02 1.60 16 23 H 0.05 2.24 7.03 -2.39 -0.02 2.22 16 24 H 0.03 1.27 6.49 -2.39 -0.02 1.25 16 25 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 26 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 27 H 0.05 2.11 6.48 -2.39 -0.02 2.09 16 28 H 0.08 2.25 6.58 -2.39 -0.02 2.23 16 29 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 30 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.34 11.51 8.90 -89.70 -0.80 10.71 16 32 H 0.03 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 34 H 0.25 15.70 6.66 -92.70 -0.62 15.08 16 Total: -1.00 -62.53 256.39 2.51 -60.02 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: 0.42 Total: 13.41 kcal Atomic # 6 Polarization: -41.81 SS G_CDS: 3.06 Total: -38.75 kcal Atomic # 7 Polarization: -86.06 SS G_CDS: -3.02 Total: -89.08 kcal Atomic # 14 Polarization: 52.36 SS G_CDS: 2.05 Total: 54.41 kcal Total: -62.53 2.51 -60.02 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259954436.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.957 kcal (2) G-P(sol) polarization free energy of solvation -62.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds