Wall clock time and date at job start Mon Mar 30 2020 02:20:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47243 * 2 1 4 4 C 1.52999 * 109.47497 * 120.00071 * 2 1 3 5 5 H 1.08993 * 109.52929 * 185.62315 * 4 2 1 6 6 C 1.53117 * 109.52214 * 305.75568 * 4 2 1 7 7 C 1.53035 * 109.28074 * 177.55663 * 6 4 2 8 8 N 1.46854 * 109.52386 * 300.82140 * 7 6 4 9 9 C 1.46848 * 111.19941 * 61.73845 * 8 7 6 10 10 C 1.53037 * 109.52140 * 298.26318 * 9 8 7 11 11 H 1.09004 * 109.50485 * 299.23737 * 10 9 8 12 12 C 1.50700 * 109.50354 * 179.12149 * 10 9 8 13 13 H 1.08002 * 119.99802 * 275.55157 * 12 10 9 14 14 C 1.37881 * 120.00155 * 95.54469 * 12 10 9 15 15 N 1.31516 * 119.99686 * 174.65310 * 14 12 10 16 16 Si 1.86796 * 119.99829 * 354.64872 * 14 12 10 17 17 H 1.48503 * 109.47044 * 94.36633 * 16 14 12 18 18 H 1.48500 * 109.47007 * 214.36423 * 16 14 12 19 19 H 1.48501 * 109.47402 * 334.36398 * 16 14 12 20 20 H 1.08997 * 109.47262 * 60.00105 * 1 2 3 21 21 H 1.09003 * 109.46837 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47004 * 299.99557 * 1 2 3 23 23 H 1.09000 * 109.47253 * 239.99953 * 2 1 3 24 24 H 1.09003 * 109.47232 * 182.96935 * 3 2 1 25 25 H 1.08999 * 109.47125 * 302.97030 * 3 2 1 26 26 H 1.09006 * 109.47217 * 62.97317 * 3 2 1 27 27 H 1.09007 * 109.50204 * 297.49680 * 6 4 2 28 28 H 1.09003 * 109.50545 * 57.61514 * 6 4 2 29 29 H 1.08997 * 109.46437 * 60.83253 * 7 6 4 30 30 H 1.08999 * 109.46416 * 180.80294 * 7 6 4 31 31 H 1.00897 * 111.00099 * 185.83897 * 8 7 6 32 32 H 1.08991 * 109.45980 * 178.24593 * 9 8 7 33 33 H 1.09001 * 109.44872 * 58.26848 * 9 8 7 34 34 H 0.97003 * 119.99673 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 1 3.1253 -0.6354 1.3018 6 6 1.4156 -0.0888 2.4960 7 6 1.8816 -0.8528 3.7375 8 7 1.4792 -2.2607 3.6271 9 6 2.1044 -2.9021 2.4633 10 6 1.6450 -2.1992 1.1839 11 1 0.5621 -2.2826 1.0915 12 6 2.3036 -2.8438 -0.0085 13 1 3.2945 -2.5372 -0.3094 14 6 1.6412 -3.8251 -0.7152 15 7 2.1700 -4.3131 -1.8160 16 14 -0.0071 -4.4613 -0.1089 17 1 -1.1025 -3.7162 -0.7799 18 1 -0.1262 -5.9074 -0.4250 19 1 -0.1032 -4.2662 1.3601 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 3.1287 1.4429 -0.0532 25 1 1.6339 1.9714 -0.8622 26 1 1.7208 1.9407 0.9155 27 1 1.7282 0.9528 2.5711 28 1 0.3291 -0.1391 2.4243 29 1 2.9670 -0.7905 3.8161 30 1 1.4275 -0.4138 4.6258 31 1 1.6910 -2.7649 4.4750 32 1 1.8119 -3.9514 2.4263 33 1 3.1887 -2.8299 2.5481 34 1 1.7038 -5.0032 -2.3134 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259954442.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:11 Heat of formation + Delta-G solvation = -24.243196 kcal Electronic energy + Delta-G solvation = -13610.331474 eV Core-core repulsion = 11541.930814 eV Total energy + Delta-G solvation = -2068.400660 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -38.60327 -34.71887 -32.80308 -30.23190 -29.56698 -26.57743 -24.81724 -23.38235 -21.29559 -19.68492 -17.86270 -16.88148 -15.75602 -14.39285 -14.02250 -13.81977 -13.59495 -13.26331 -12.75111 -12.53833 -12.19352 -12.13657 -11.29197 -11.19692 -11.03657 -10.87222 -10.53365 -10.38020 -10.21571 -9.79335 -9.57651 -9.38444 -8.92313 -8.81232 -8.46082 -7.77618 -6.03744 -4.01577 3.33255 3.42919 3.52191 4.48366 4.89506 5.29351 5.48721 5.51341 5.69228 5.79952 5.82221 5.96687 6.11407 6.21243 6.30675 6.35061 6.41845 6.48842 6.51833 6.57226 6.64619 6.76896 6.88175 6.94021 7.07891 7.29697 7.45538 7.52959 7.67742 7.90458 8.04745 8.60013 9.02595 9.61127 11.09406 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.029452 B = 0.016801 C = 0.013094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.481476 B = 1666.156374 C = 2137.952286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.085 4.085 3 C -0.145 4.145 4 C -0.065 4.065 5 H 0.052 0.948 6 C -0.118 4.118 7 C 0.063 3.937 8 N -0.697 5.697 9 C 0.061 3.939 10 C 0.024 3.976 11 H 0.042 0.958 12 C -0.505 4.505 13 H 0.070 0.930 14 C 0.073 3.927 15 N -0.902 5.902 16 Si 0.866 3.134 17 H -0.278 1.278 18 H -0.292 1.292 19 H -0.254 1.254 20 H 0.040 0.960 21 H 0.058 0.942 22 H 0.046 0.954 23 H 0.088 0.912 24 H 0.047 0.953 25 H 0.044 0.956 26 H 0.046 0.954 27 H 0.053 0.947 28 H 0.067 0.933 29 H 0.020 0.980 30 H 0.058 0.942 31 H 0.325 0.675 32 H 0.061 0.939 33 H 0.019 0.981 34 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.144 7.472 7.524 10.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.103 4.103 3 C -0.203 4.203 4 C -0.084 4.084 5 H 0.071 0.929 6 C -0.156 4.156 7 C -0.067 4.067 8 N -0.327 5.327 9 C -0.068 4.068 10 C 0.005 3.995 11 H 0.060 0.940 12 C -0.543 4.543 13 H 0.088 0.912 14 C -0.129 4.129 15 N -0.540 5.540 16 Si 0.693 3.307 17 H -0.204 1.204 18 H -0.218 1.218 19 H -0.178 1.178 20 H 0.059 0.941 21 H 0.077 0.923 22 H 0.065 0.935 23 H 0.106 0.894 24 H 0.066 0.934 25 H 0.063 0.937 26 H 0.065 0.935 27 H 0.071 0.929 28 H 0.086 0.914 29 H 0.038 0.962 30 H 0.076 0.924 31 H 0.141 0.859 32 H 0.080 0.920 33 H 0.037 0.963 34 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.749 7.484 7.035 10.633 hybrid contribution 0.125 -0.620 0.525 0.822 sum -2.624 6.864 7.561 10.543 Atomic orbital electron populations 1.21874 0.96580 1.01748 0.99814 1.21015 0.94939 0.94117 1.00214 1.21907 1.00414 0.97549 1.00391 1.21129 0.98392 0.96781 0.92095 0.92911 1.21821 1.01395 0.97462 0.94904 1.21832 0.96875 0.89929 0.98046 1.60480 1.63458 1.02451 1.06357 1.22468 0.95235 0.98264 0.90805 1.19235 0.97230 0.90824 0.92235 0.93968 1.20957 1.03751 1.19777 1.09842 0.91170 1.25036 0.97376 0.96101 0.94340 1.69922 1.39427 1.28828 1.15815 0.87011 0.84871 0.77946 0.80844 1.20447 1.21822 1.17755 0.94104 0.92337 0.93485 0.89393 0.93420 0.93733 0.93467 0.92851 0.91417 0.96219 0.92365 0.85930 0.92005 0.96266 0.92826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.61 8.45 37.16 0.31 -2.30 16 2 C -0.08 -1.62 2.57 -90.62 -0.23 -1.85 16 3 C -0.15 -2.30 9.03 37.16 0.34 -1.96 16 4 C -0.07 -1.30 1.52 -90.50 -0.14 -1.44 16 5 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 6 C -0.12 -2.02 4.65 -26.65 -0.12 -2.15 16 7 C 0.06 1.03 6.55 -3.83 -0.03 1.00 16 8 N -0.70 -12.78 6.85 -113.82 -0.78 -13.56 16 9 C 0.06 1.31 5.60 -3.83 -0.02 1.29 16 10 C 0.02 0.56 1.12 -91.69 -0.10 0.45 16 11 H 0.04 1.03 3.94 -51.93 -0.20 0.82 16 12 C -0.50 -13.77 7.64 -34.44 -0.26 -14.03 16 13 H 0.07 2.10 8.06 -52.49 -0.42 1.68 16 14 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 15 N -0.90 -27.33 13.96 55.43 0.77 -26.56 16 16 Si 0.87 21.61 26.59 -169.99 -4.52 17.09 16 17 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 18 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 19 H -0.25 -6.15 6.10 56.52 0.34 -5.81 16 20 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 21 H 0.06 1.20 6.54 -51.93 -0.34 0.86 16 22 H 0.05 0.77 6.29 -51.93 -0.33 0.44 16 23 H 0.09 1.97 7.13 -51.93 -0.37 1.60 16 24 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 25 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.05 0.68 6.52 -51.93 -0.34 0.34 16 27 H 0.05 0.81 6.65 -51.92 -0.35 0.46 16 28 H 0.07 1.20 6.21 -51.93 -0.32 0.87 16 29 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.32 5.10 8.90 -39.29 -0.35 4.76 16 32 H 0.06 1.39 7.14 -51.93 -0.37 1.02 16 33 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 252.99 15.07 3.81 3.81 Total: -1.00 -29.03 252.99 -6.61 -35.64 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -5.54 Total: 2.59 kcal Atomic # 6 Polarization: -18.66 SS G_CDS: -0.35 Total: -19.01 kcal Atomic # 7 Polarization: -40.11 SS G_CDS: -0.01 Total: -40.11 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.52 Total: 17.09 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -29.03 -6.61 -35.64 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259954442.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.399 kcal (2) G-P(sol) polarization free energy of solvation -29.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds