Wall clock time and date at job start Mon Mar 30 2020 02:20:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47243 * 2 1 4 4 C 1.52999 * 109.47497 * 120.00071 * 2 1 3 5 5 H 1.08993 * 109.52929 * 185.62315 * 4 2 1 6 6 C 1.53117 * 109.52214 * 305.75568 * 4 2 1 7 7 C 1.53035 * 109.28074 * 177.55663 * 6 4 2 8 8 N 1.46854 * 109.52386 * 300.82140 * 7 6 4 9 9 C 1.46848 * 111.19941 * 61.73845 * 8 7 6 10 10 C 1.53037 * 109.52140 * 298.26318 * 9 8 7 11 11 H 1.09004 * 109.50485 * 299.23737 * 10 9 8 12 12 C 1.50700 * 109.50354 * 179.12149 * 10 9 8 13 13 H 1.08002 * 119.99802 * 275.55157 * 12 10 9 14 14 C 1.37881 * 120.00155 * 95.54469 * 12 10 9 15 15 N 1.31516 * 119.99686 * 174.65310 * 14 12 10 16 16 Si 1.86796 * 119.99829 * 354.64872 * 14 12 10 17 17 H 1.48503 * 109.47044 * 94.36633 * 16 14 12 18 18 H 1.48500 * 109.47007 * 214.36423 * 16 14 12 19 19 H 1.48501 * 109.47402 * 334.36398 * 16 14 12 20 20 H 1.08997 * 109.47262 * 60.00105 * 1 2 3 21 21 H 1.09003 * 109.46837 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47004 * 299.99557 * 1 2 3 23 23 H 1.09000 * 109.47253 * 239.99953 * 2 1 3 24 24 H 1.09003 * 109.47232 * 182.96935 * 3 2 1 25 25 H 1.08999 * 109.47125 * 302.97030 * 3 2 1 26 26 H 1.09006 * 109.47217 * 62.97317 * 3 2 1 27 27 H 1.09007 * 109.50204 * 297.49680 * 6 4 2 28 28 H 1.09003 * 109.50545 * 57.61514 * 6 4 2 29 29 H 1.08997 * 109.46437 * 60.83253 * 7 6 4 30 30 H 1.08999 * 109.46416 * 180.80294 * 7 6 4 31 31 H 1.00897 * 111.00099 * 185.83897 * 8 7 6 32 32 H 1.08991 * 109.45980 * 178.24593 * 9 8 7 33 33 H 1.09001 * 109.44872 * 58.26848 * 9 8 7 34 34 H 0.97003 * 119.99673 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 1 3.1253 -0.6354 1.3018 6 6 1.4156 -0.0888 2.4960 7 6 1.8816 -0.8528 3.7375 8 7 1.4792 -2.2607 3.6271 9 6 2.1044 -2.9021 2.4633 10 6 1.6450 -2.1992 1.1839 11 1 0.5621 -2.2826 1.0915 12 6 2.3036 -2.8438 -0.0085 13 1 3.2945 -2.5372 -0.3094 14 6 1.6412 -3.8251 -0.7152 15 7 2.1700 -4.3131 -1.8160 16 14 -0.0071 -4.4613 -0.1089 17 1 -1.1025 -3.7162 -0.7799 18 1 -0.1262 -5.9074 -0.4250 19 1 -0.1032 -4.2662 1.3601 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 3.1287 1.4429 -0.0532 25 1 1.6339 1.9714 -0.8622 26 1 1.7208 1.9407 0.9155 27 1 1.7282 0.9528 2.5711 28 1 0.3291 -0.1391 2.4243 29 1 2.9670 -0.7905 3.8161 30 1 1.4275 -0.4138 4.6258 31 1 1.6910 -2.7649 4.4750 32 1 1.8119 -3.9514 2.4263 33 1 3.1887 -2.8299 2.5481 34 1 1.7038 -5.0032 -2.3134 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259954442.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:10 Heat of formation + Delta-G solvation = -44.303658 kcal Electronic energy + Delta-G solvation = -13611.201361 eV Core-core repulsion = 11541.930814 eV Total energy + Delta-G solvation = -2069.270546 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.18183 -36.19573 -34.87752 -32.07748 -31.02305 -27.95848 -26.75352 -24.92897 -22.91951 -21.29131 -19.48754 -18.98541 -17.34152 -16.09182 -15.77817 -15.37707 -15.12059 -14.87371 -14.62677 -14.12414 -13.88003 -13.47915 -13.03413 -12.63364 -12.60985 -12.48726 -12.35757 -11.88576 -11.83724 -11.69882 -11.32317 -11.06056 -10.76092 -10.56051 -10.48880 -9.26125 -8.26143 -6.26471 1.32949 1.37108 1.51416 2.37398 3.09021 3.51445 4.05259 4.08129 4.14652 4.45601 4.48203 4.55165 4.64226 4.77845 4.84746 4.87815 4.94913 4.98750 5.11146 5.12086 5.18290 5.25718 5.28776 5.37780 5.53631 5.64793 5.72149 5.83721 5.89129 6.14073 6.45058 6.68265 6.81926 7.38703 8.91128 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.029452 B = 0.016801 C = 0.013094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.481476 B = 1666.156374 C = 2137.952286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.087 4.087 3 C -0.137 4.137 4 C -0.065 4.065 5 H 0.037 0.963 6 C -0.112 4.112 7 C 0.060 3.940 8 N -0.698 5.698 9 C 0.068 3.932 10 C 0.023 3.977 11 H 0.036 0.964 12 C -0.497 4.497 13 H 0.026 0.974 14 C 0.017 3.983 15 N -0.952 5.952 16 Si 0.928 3.072 17 H -0.273 1.273 18 H -0.291 1.291 19 H -0.239 1.239 20 H 0.054 0.946 21 H 0.029 0.971 22 H 0.073 0.927 23 H 0.040 0.960 24 H 0.044 0.956 25 H 0.056 0.944 26 H 0.071 0.929 27 H 0.083 0.917 28 H 0.068 0.932 29 H 0.022 0.978 30 H 0.093 0.907 31 H 0.343 0.657 32 H 0.047 0.953 33 H 0.010 0.990 34 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.628 9.209 9.842 13.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.106 4.106 3 C -0.194 4.194 4 C -0.083 4.083 5 H 0.055 0.945 6 C -0.150 4.150 7 C -0.069 4.069 8 N -0.330 5.330 9 C -0.061 4.061 10 C 0.004 3.996 11 H 0.054 0.946 12 C -0.535 4.535 13 H 0.045 0.955 14 C -0.180 4.180 15 N -0.592 5.592 16 Si 0.753 3.247 17 H -0.198 1.198 18 H -0.218 1.218 19 H -0.163 1.163 20 H 0.073 0.927 21 H 0.048 0.952 22 H 0.092 0.908 23 H 0.058 0.942 24 H 0.063 0.937 25 H 0.075 0.925 26 H 0.090 0.910 27 H 0.101 0.899 28 H 0.087 0.913 29 H 0.040 0.960 30 H 0.112 0.888 31 H 0.161 0.839 32 H 0.066 0.934 33 H 0.028 0.972 34 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.231 9.236 9.386 13.831 hybrid contribution 0.681 -1.112 -0.207 1.321 sum -3.550 8.124 9.178 12.761 Atomic orbital electron populations 1.21839 0.95505 1.00445 1.01826 1.20956 0.95874 0.95960 0.97776 1.21818 1.00259 0.95065 1.02261 1.21063 0.97732 0.95004 0.94540 0.94493 1.21791 1.01081 0.98907 0.93192 1.21973 0.97426 0.88518 0.99031 1.60372 1.62979 1.03675 1.05961 1.22133 0.94799 0.97537 0.91667 1.19191 0.96210 0.92997 0.91237 0.94609 1.21169 1.01974 1.19228 1.11151 0.95524 1.25807 1.01119 0.96593 0.94460 1.70065 1.41441 1.30148 1.17583 0.86019 0.80545 0.77146 0.81013 1.19844 1.21781 1.16255 0.92742 0.95224 0.90831 0.94166 0.93673 0.92454 0.91003 0.89896 0.91321 0.95966 0.88841 0.83886 0.93432 0.97163 0.92839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.82 8.45 71.98 0.61 -4.21 16 2 C -0.09 -3.28 2.57 -10.80 -0.03 -3.31 16 3 C -0.14 -3.99 9.03 71.98 0.65 -3.34 16 4 C -0.06 -2.52 1.52 -10.71 -0.02 -2.54 16 5 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 6 C -0.11 -3.42 4.65 30.64 0.14 -3.27 16 7 C 0.06 1.70 6.55 86.32 0.57 2.27 16 8 N -0.70 -23.46 6.85 -514.01 -3.52 -26.98 16 9 C 0.07 2.87 5.60 86.33 0.48 3.35 16 10 C 0.02 1.06 1.12 -11.49 -0.01 1.05 16 11 H 0.04 1.71 3.94 -2.38 -0.01 1.70 16 12 C -0.50 -28.20 7.64 25.60 0.20 -28.00 16 13 H 0.03 1.69 8.06 -2.91 -0.02 1.67 16 14 C 0.02 0.99 5.47 84.66 0.46 1.45 16 15 N -0.95 -60.12 13.96 21.45 0.30 -59.82 16 16 Si 0.93 45.35 26.59 68.60 1.82 47.17 16 17 H -0.27 -12.99 7.11 99.48 0.71 -12.29 16 18 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 19 H -0.24 -11.04 6.10 99.48 0.61 -10.44 16 20 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 21 H 0.03 1.17 6.54 -2.39 -0.02 1.16 16 22 H 0.07 2.14 6.29 -2.39 -0.02 2.13 16 23 H 0.04 1.87 7.13 -2.39 -0.02 1.86 16 24 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 25 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 26 H 0.07 1.75 6.52 -2.38 -0.02 1.73 16 27 H 0.08 2.07 6.65 -2.38 -0.02 2.06 16 28 H 0.07 2.12 6.21 -2.39 -0.01 2.10 16 29 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 31 H 0.34 9.62 8.90 -89.70 -0.80 8.83 16 32 H 0.05 2.11 7.14 -2.39 -0.02 2.09 16 33 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 34 H 0.26 15.64 8.31 -92.71 -0.77 14.87 16 Total: -1.00 -64.83 252.99 1.83 -63.00 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: 0.17 Total: 13.18 kcal Atomic # 6 Polarization: -39.61 SS G_CDS: 3.05 Total: -36.56 kcal Atomic # 7 Polarization: -83.57 SS G_CDS: -3.22 Total: -86.79 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 1.82 Total: 47.17 kcal Total: -64.83 1.83 -63.00 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259954442.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.696 kcal (2) G-P(sol) polarization free energy of solvation -64.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds