Wall clock time and date at job start Mon Mar 30 2020 02:20:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52994 * 109.47344 * 2 1 4 4 C 1.52993 * 109.46868 * 120.00476 * 2 1 3 5 5 H 1.09001 * 109.52698 * 58.03395 * 4 2 1 6 6 C 1.53121 * 109.57682 * 297.86859 * 4 2 1 7 7 C 1.53039 * 109.27771 * 182.40957 * 6 4 2 8 8 N 1.46844 * 109.52334 * 59.18610 * 7 6 4 9 9 C 1.46855 * 111.19581 * 298.25254 * 8 7 6 10 10 C 1.53037 * 109.52045 * 61.74475 * 9 8 7 11 11 H 1.08997 * 109.53858 * 60.78149 * 10 9 8 12 12 C 1.50701 * 109.50138 * 180.88240 * 10 9 8 13 13 H 1.07993 * 120.00379 * 115.04116 * 12 10 9 14 14 C 1.37878 * 119.99700 * 295.31397 * 12 10 9 15 15 N 1.31517 * 120.00049 * 179.72433 * 14 12 10 16 16 Si 1.86807 * 120.00074 * 359.72585 * 14 12 10 17 17 H 1.48495 * 109.47274 * 89.99914 * 16 14 12 18 18 H 1.48498 * 109.46766 * 210.00249 * 16 14 12 19 19 H 1.48499 * 109.46739 * 329.99819 * 16 14 12 20 20 H 1.09001 * 109.46428 * 305.92936 * 1 2 3 21 21 H 1.08998 * 109.47096 * 65.92416 * 1 2 3 22 22 H 1.09001 * 109.47258 * 185.92632 * 1 2 3 23 23 H 1.09001 * 109.46396 * 240.00005 * 2 1 3 24 24 H 1.09000 * 109.47158 * 179.97438 * 3 2 1 25 25 H 1.09001 * 109.47195 * 300.00392 * 3 2 1 26 26 H 1.09005 * 109.47081 * 60.00201 * 3 2 1 27 27 H 1.08994 * 109.50254 * 302.35319 * 6 4 2 28 28 H 1.09006 * 109.49911 * 62.43471 * 6 4 2 29 29 H 1.09004 * 109.45599 * 179.19812 * 7 6 4 30 30 H 1.08997 * 109.46498 * 299.17010 * 7 6 4 31 31 H 1.00896 * 111.00212 * 174.15522 * 8 7 6 32 32 H 1.09002 * 109.45874 * 301.73054 * 9 8 7 33 33 H 1.09000 * 109.46129 * 181.75863 * 9 8 7 34 34 H 0.96996 * 119.99894 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2491 5 1 1.6486 -1.7385 1.2678 6 6 1.5752 0.0288 2.5005 7 6 2.1388 -0.6638 3.7433 8 7 3.6056 -0.6767 3.6753 9 6 4.0763 -1.4320 2.5071 10 6 3.5706 -0.7624 1.2274 11 1 3.9610 0.2536 1.1688 12 6 4.0357 -1.5500 0.0298 13 1 3.3149 -2.0433 -0.6053 14 6 5.3820 -1.6455 -0.2519 15 7 5.7884 -2.3374 -1.2940 16 14 6.6290 -0.7922 0.8465 17 1 7.0444 -1.7147 1.9335 18 1 7.8166 -0.4084 0.0419 19 1 6.0170 0.4251 1.4373 20 1 -0.3632 0.6030 0.8322 21 1 -0.3633 0.4192 -0.9382 22 1 -0.3634 -1.0222 0.1061 23 1 1.8933 -0.5139 -0.8900 24 1 3.1301 1.4424 0.0005 25 1 1.6768 1.9563 -0.8899 26 1 1.6768 1.9563 0.8900 27 1 1.9343 1.0572 2.4626 28 1 0.4860 0.0249 2.5434 29 1 1.8213 -0.1237 4.6353 30 1 1.7683 -1.6879 3.7878 31 1 4.0039 -1.0426 4.5270 32 1 3.6966 -2.4525 2.5575 33 1 5.1662 -1.4499 2.5014 34 1 6.7355 -2.4049 -1.4919 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259954446.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:14 Heat of formation + Delta-G solvation = -19.576209 kcal Electronic energy + Delta-G solvation = -13603.286111 eV Core-core repulsion = 11535.087827 eV Total energy + Delta-G solvation = -2068.198284 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -38.66491 -34.77758 -32.86012 -30.24551 -29.60300 -26.59406 -24.77264 -23.50316 -21.31196 -19.84302 -17.87398 -16.73954 -15.92026 -14.41258 -14.07509 -13.85018 -13.68988 -13.27378 -12.91873 -12.55315 -12.17090 -12.13014 -11.33779 -11.24498 -11.06994 -10.92506 -10.41882 -10.37575 -10.23860 -9.78261 -9.67258 -9.43687 -8.90432 -8.75242 -8.48536 -7.80986 -6.03001 -4.01522 3.30716 3.42624 3.50850 4.46189 4.86531 5.30469 5.45371 5.48515 5.63471 5.75171 5.79070 5.93869 6.07777 6.18086 6.29583 6.30670 6.37498 6.44850 6.45731 6.53321 6.62109 6.73156 6.84443 6.93678 7.08539 7.17610 7.34414 7.50280 7.73194 7.89819 7.99834 8.60043 9.02117 9.60225 11.09892 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.031567 B = 0.016211 C = 0.012446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.794938 B = 1726.848625 C = 2249.217086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.084 4.084 3 C -0.143 4.143 4 C -0.063 4.063 5 H 0.054 0.946 6 C -0.117 4.117 7 C 0.063 3.937 8 N -0.696 5.696 9 C 0.054 3.946 10 C 0.021 3.979 11 H 0.041 0.959 12 C -0.506 4.506 13 H 0.074 0.926 14 C 0.069 3.931 15 N -0.903 5.903 16 Si 0.877 3.123 17 H -0.281 1.281 18 H -0.297 1.297 19 H -0.257 1.257 20 H 0.047 0.953 21 H 0.044 0.956 22 H 0.047 0.953 23 H 0.083 0.917 24 H 0.064 0.936 25 H 0.039 0.961 26 H 0.045 0.955 27 H 0.068 0.932 28 H 0.054 0.946 29 H 0.059 0.941 30 H 0.021 0.979 31 H 0.326 0.674 32 H 0.025 0.975 33 H 0.057 0.943 34 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.247 4.590 7.021 11.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.103 4.103 3 C -0.200 4.200 4 C -0.082 4.082 5 H 0.073 0.927 6 C -0.154 4.154 7 C -0.067 4.067 8 N -0.326 5.326 9 C -0.074 4.074 10 C 0.002 3.998 11 H 0.059 0.941 12 C -0.544 4.544 13 H 0.092 0.908 14 C -0.132 4.132 15 N -0.541 5.541 16 Si 0.706 3.294 17 H -0.208 1.208 18 H -0.224 1.224 19 H -0.181 1.181 20 H 0.066 0.934 21 H 0.063 0.937 22 H 0.066 0.934 23 H 0.101 0.899 24 H 0.083 0.917 25 H 0.058 0.942 26 H 0.064 0.936 27 H 0.086 0.914 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.039 0.961 31 H 0.142 0.858 32 H 0.043 0.957 33 H 0.075 0.925 34 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.062 5.143 6.589 10.942 hybrid contribution 0.696 -0.703 0.866 1.315 sum -6.366 4.440 7.455 10.762 Atomic orbital electron populations 1.21911 0.97181 1.00772 1.00417 1.21012 0.93208 0.96242 0.99791 1.21862 1.02243 0.96161 0.99714 1.21056 0.97494 0.97366 0.92275 0.92738 1.21789 0.98474 1.00434 0.94732 1.21836 0.88580 0.98084 0.98177 1.60448 1.07288 1.59092 1.05819 1.22555 0.98785 0.94879 0.91198 1.19281 0.91430 0.97201 0.91867 0.94115 1.21060 0.92697 1.31551 1.09125 0.90755 1.25026 0.98453 0.94783 0.94947 1.69904 1.15452 1.41224 1.27553 0.86966 0.80923 0.81315 0.80187 1.20849 1.22426 1.18098 0.93406 0.93709 0.93398 0.89903 0.91700 0.94179 0.93589 0.91380 0.92768 0.92232 0.96100 0.85828 0.95683 0.92517 0.92806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 8.73 37.16 0.32 -1.90 16 2 C -0.08 -1.57 2.55 -90.62 -0.23 -1.80 16 3 C -0.14 -2.52 8.49 37.15 0.32 -2.20 16 4 C -0.06 -1.26 1.51 -90.50 -0.14 -1.39 16 5 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 6 C -0.12 -1.98 4.67 -26.65 -0.12 -2.10 16 7 C 0.06 1.03 6.55 -3.83 -0.03 1.00 16 8 N -0.70 -12.97 6.85 -113.81 -0.78 -13.75 16 9 C 0.05 1.20 5.40 -3.83 -0.02 1.18 16 10 C 0.02 0.50 1.10 -91.69 -0.10 0.40 16 11 H 0.04 1.01 5.09 -51.93 -0.26 0.75 16 12 C -0.51 -13.90 8.25 -34.44 -0.28 -14.18 16 13 H 0.07 2.21 7.32 -52.49 -0.38 1.83 16 14 C 0.07 1.98 5.45 -17.82 -0.10 1.89 16 15 N -0.90 -27.55 13.96 55.43 0.77 -26.78 16 16 Si 0.88 22.07 24.63 -169.99 -4.19 17.89 16 17 H -0.28 -6.94 6.88 56.52 0.39 -6.55 16 18 H -0.30 -7.52 7.11 56.52 0.40 -7.12 16 19 H -0.26 -6.34 6.41 56.52 0.36 -5.97 16 20 H 0.05 0.66 6.86 -51.93 -0.36 0.31 16 21 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 22 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 23 H 0.08 1.77 6.83 -51.93 -0.35 1.41 16 24 H 0.06 1.29 6.43 -51.93 -0.33 0.96 16 25 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.05 0.74 6.34 -51.93 -0.33 0.41 16 27 H 0.07 1.18 6.27 -51.93 -0.33 0.86 16 28 H 0.05 0.81 6.76 -51.93 -0.35 0.45 16 29 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 30 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.33 5.25 8.90 -39.29 -0.35 4.90 16 32 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.06 1.33 3.93 -51.93 -0.20 1.13 16 34 H 0.26 7.56 8.31 -40.82 -0.34 7.23 16 LS Contribution 248.57 15.07 3.75 3.75 Total: -1.00 -29.32 248.57 -6.23 -35.55 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -5.40 Total: 2.47 kcal Atomic # 6 Polarization: -18.73 SS G_CDS: -0.38 Total: -19.11 kcal Atomic # 7 Polarization: -40.53 SS G_CDS: -0.01 Total: -40.53 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.19 Total: 17.89 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -29.32 -6.23 -35.55 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259954446.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.970 kcal (2) G-P(sol) polarization free energy of solvation -29.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds