Wall clock time and date at job start Mon Mar 30 2020 02:20:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52994 * 109.47344 * 2 1 4 4 C 1.52993 * 109.46868 * 120.00476 * 2 1 3 5 5 H 1.09001 * 109.52698 * 58.03395 * 4 2 1 6 6 C 1.53121 * 109.57682 * 297.86859 * 4 2 1 7 7 C 1.53039 * 109.27771 * 182.40957 * 6 4 2 8 8 N 1.46844 * 109.52334 * 59.18610 * 7 6 4 9 9 C 1.46855 * 111.19581 * 298.25254 * 8 7 6 10 10 C 1.53037 * 109.52045 * 61.74475 * 9 8 7 11 11 H 1.08997 * 109.53858 * 60.78149 * 10 9 8 12 12 C 1.50701 * 109.50138 * 180.88240 * 10 9 8 13 13 H 1.07993 * 120.00379 * 115.04116 * 12 10 9 14 14 C 1.37878 * 119.99700 * 295.31397 * 12 10 9 15 15 N 1.31517 * 120.00049 * 179.72433 * 14 12 10 16 16 Si 1.86807 * 120.00074 * 359.72585 * 14 12 10 17 17 H 1.48495 * 109.47274 * 89.99914 * 16 14 12 18 18 H 1.48498 * 109.46766 * 210.00249 * 16 14 12 19 19 H 1.48499 * 109.46739 * 329.99819 * 16 14 12 20 20 H 1.09001 * 109.46428 * 305.92936 * 1 2 3 21 21 H 1.08998 * 109.47096 * 65.92416 * 1 2 3 22 22 H 1.09001 * 109.47258 * 185.92632 * 1 2 3 23 23 H 1.09001 * 109.46396 * 240.00005 * 2 1 3 24 24 H 1.09000 * 109.47158 * 179.97438 * 3 2 1 25 25 H 1.09001 * 109.47195 * 300.00392 * 3 2 1 26 26 H 1.09005 * 109.47081 * 60.00201 * 3 2 1 27 27 H 1.08994 * 109.50254 * 302.35319 * 6 4 2 28 28 H 1.09006 * 109.49911 * 62.43471 * 6 4 2 29 29 H 1.09004 * 109.45599 * 179.19812 * 7 6 4 30 30 H 1.08997 * 109.46498 * 299.17010 * 7 6 4 31 31 H 1.00896 * 111.00212 * 174.15522 * 8 7 6 32 32 H 1.09002 * 109.45874 * 301.73054 * 9 8 7 33 33 H 1.09000 * 109.46129 * 181.75863 * 9 8 7 34 34 H 0.96996 * 119.99894 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2491 5 1 1.6486 -1.7385 1.2678 6 6 1.5752 0.0288 2.5005 7 6 2.1388 -0.6638 3.7433 8 7 3.6056 -0.6767 3.6753 9 6 4.0763 -1.4320 2.5071 10 6 3.5706 -0.7624 1.2274 11 1 3.9610 0.2536 1.1688 12 6 4.0357 -1.5500 0.0298 13 1 3.3149 -2.0433 -0.6053 14 6 5.3820 -1.6455 -0.2519 15 7 5.7884 -2.3374 -1.2940 16 14 6.6290 -0.7922 0.8465 17 1 7.0444 -1.7147 1.9335 18 1 7.8166 -0.4084 0.0419 19 1 6.0170 0.4251 1.4373 20 1 -0.3632 0.6030 0.8322 21 1 -0.3633 0.4192 -0.9382 22 1 -0.3634 -1.0222 0.1061 23 1 1.8933 -0.5139 -0.8900 24 1 3.1301 1.4424 0.0005 25 1 1.6768 1.9563 -0.8899 26 1 1.6768 1.9563 0.8900 27 1 1.9343 1.0572 2.4626 28 1 0.4860 0.0249 2.5434 29 1 1.8213 -0.1237 4.6353 30 1 1.7683 -1.6879 3.7878 31 1 4.0039 -1.0426 4.5270 32 1 3.6966 -2.4525 2.5575 33 1 5.1662 -1.4499 2.5014 34 1 6.7355 -2.4049 -1.4919 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259954446.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:13 Heat of formation + Delta-G solvation = -40.407138 kcal Electronic energy + Delta-G solvation = -13604.189407 eV Core-core repulsion = 11535.087827 eV Total energy + Delta-G solvation = -2069.101581 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.24012 -36.24379 -34.93312 -32.10746 -31.05300 -27.93861 -26.70401 -25.05947 -22.96650 -21.41963 -19.47035 -18.85478 -17.53651 -16.07623 -15.82403 -15.40745 -15.25996 -14.93941 -14.64218 -14.17516 -13.88408 -13.45635 -13.04936 -12.67789 -12.59270 -12.50899 -12.23010 -11.99598 -11.83341 -11.59703 -11.40166 -11.10001 -10.76262 -10.55609 -10.47558 -9.30904 -8.27091 -6.28566 1.28520 1.35872 1.48741 2.33810 3.06705 3.46572 4.04851 4.05999 4.08682 4.41794 4.46767 4.52649 4.62212 4.70452 4.83894 4.86298 4.93888 4.98433 5.08845 5.10398 5.16587 5.26515 5.29124 5.36544 5.55268 5.59653 5.69611 5.81990 5.88652 6.09902 6.44136 6.62797 6.80546 7.36207 8.89586 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.031567 B = 0.016211 C = 0.012446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.794938 B = 1726.848625 C = 2249.217086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.087 4.087 3 C -0.138 4.138 4 C -0.063 4.063 5 H 0.038 0.962 6 C -0.110 4.110 7 C 0.059 3.941 8 N -0.697 5.697 9 C 0.060 3.940 10 C 0.022 3.978 11 H 0.031 0.969 12 C -0.500 4.500 13 H 0.035 0.965 14 C 0.012 3.988 15 N -0.951 5.951 16 Si 0.939 3.061 17 H -0.270 1.270 18 H -0.299 1.299 19 H -0.247 1.247 20 H 0.071 0.929 21 H 0.056 0.944 22 H 0.047 0.953 23 H 0.039 0.961 24 H 0.033 0.967 25 H 0.055 0.945 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.084 0.916 29 H 0.096 0.904 30 H 0.023 0.977 31 H 0.344 0.656 32 H 0.014 0.986 33 H 0.042 0.958 34 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.529 6.207 9.434 14.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.105 4.105 3 C -0.195 4.195 4 C -0.082 4.082 5 H 0.056 0.944 6 C -0.148 4.148 7 C -0.070 4.070 8 N -0.329 5.329 9 C -0.069 4.069 10 C 0.003 3.997 11 H 0.049 0.951 12 C -0.539 4.539 13 H 0.053 0.947 14 C -0.184 4.184 15 N -0.593 5.593 16 Si 0.766 3.234 17 H -0.196 1.196 18 H -0.226 1.226 19 H -0.170 1.170 20 H 0.090 0.910 21 H 0.075 0.925 22 H 0.066 0.934 23 H 0.057 0.943 24 H 0.052 0.948 25 H 0.074 0.926 26 H 0.088 0.912 27 H 0.087 0.913 28 H 0.103 0.897 29 H 0.114 0.886 30 H 0.042 0.958 31 H 0.161 0.839 32 H 0.032 0.968 33 H 0.061 0.939 34 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -8.363 6.763 9.031 14.044 hybrid contribution 1.015 -1.241 0.066 1.604 sum -7.348 5.522 9.097 12.932 Atomic orbital electron populations 1.21818 0.93992 1.01451 1.02124 1.20966 0.95911 0.96255 0.97397 1.21810 1.00208 0.95788 1.01666 1.21014 0.94884 0.97400 0.94885 0.94359 1.21761 1.00352 0.99725 0.92952 1.21992 0.86876 0.98794 0.99314 1.60355 1.09072 1.58177 1.05281 1.22239 0.97858 0.94573 0.92219 1.19197 0.94181 0.95578 0.90759 0.95132 1.21327 0.91941 1.30681 1.09962 0.94720 1.25813 1.00593 0.95697 0.96304 1.70050 1.15880 1.43543 1.29783 0.85961 0.78262 0.80668 0.78535 1.19624 1.22612 1.17038 0.91005 0.92536 0.93416 0.94260 0.94782 0.92636 0.91207 0.91283 0.89740 0.88626 0.95844 0.83851 0.96751 0.93946 0.92804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.83 8.73 71.99 0.63 -3.20 16 2 C -0.09 -3.18 2.55 -10.80 -0.03 -3.21 16 3 C -0.14 -4.66 8.49 71.98 0.61 -4.05 16 4 C -0.06 -2.45 1.51 -10.71 -0.02 -2.47 16 5 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 6 C -0.11 -3.33 4.67 30.65 0.14 -3.19 16 7 C 0.06 1.70 6.55 86.33 0.57 2.26 16 8 N -0.70 -23.81 6.85 -513.99 -3.52 -27.33 16 9 C 0.06 2.60 5.40 86.32 0.47 3.06 16 10 C 0.02 1.03 1.10 -11.49 -0.01 1.01 16 11 H 0.03 1.51 5.09 -2.39 -0.01 1.49 16 12 C -0.50 -28.60 8.25 25.60 0.21 -28.39 16 13 H 0.03 2.20 7.32 -2.91 -0.02 2.18 16 14 C 0.01 0.73 5.45 84.65 0.46 1.19 16 15 N -0.95 -60.39 13.96 21.45 0.30 -60.09 16 16 Si 0.94 46.29 24.63 68.60 1.69 47.98 16 17 H -0.27 -12.73 6.88 99.48 0.68 -12.04 16 18 H -0.30 -14.69 7.11 99.48 0.71 -13.98 16 19 H -0.25 -11.65 6.41 99.48 0.64 -11.01 16 20 H 0.07 1.68 6.86 -2.39 -0.02 1.67 16 21 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 22 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 23 H 0.04 1.75 6.83 -2.39 -0.02 1.74 16 24 H 0.03 1.34 6.43 -2.39 -0.02 1.32 16 25 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 26 H 0.07 2.02 6.34 -2.38 -0.02 2.00 16 27 H 0.07 2.11 6.27 -2.39 -0.01 2.09 16 28 H 0.08 2.08 6.76 -2.38 -0.02 2.06 16 29 H 0.10 2.14 8.14 -2.38 -0.02 2.12 16 30 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.34 9.86 8.90 -89.70 -0.80 9.07 16 32 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.04 1.94 3.93 -2.39 -0.01 1.93 16 34 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 Total: -1.00 -65.29 248.57 1.69 -63.60 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: 0.19 Total: 12.82 kcal Atomic # 6 Polarization: -40.01 SS G_CDS: 3.03 Total: -36.98 kcal Atomic # 7 Polarization: -84.20 SS G_CDS: -3.22 Total: -87.42 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 1.69 Total: 47.98 kcal Total: -65.29 1.69 -63.60 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259954446.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.190 kcal (2) G-P(sol) polarization free energy of solvation -65.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds