Wall clock time and date at job start Mon Mar 30 2020 02:22:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47147 * 2 1 4 4 C 1.53003 * 109.46900 * 240.00476 * 2 1 3 5 5 H 1.09002 * 109.50039 * 305.31099 * 4 2 1 6 6 C 1.53038 * 109.50658 * 65.39483 * 4 2 1 7 7 N 1.46846 * 109.52298 * 179.12068 * 6 4 2 8 8 C 1.46847 * 111.19904 * 298.25536 * 7 6 4 9 9 C 1.53042 * 109.52338 * 61.74158 * 8 7 6 10 10 C 1.53116 * 109.27957 * 300.82531 * 9 8 7 11 11 H 1.09005 * 109.52021 * 297.74948 * 10 9 8 12 12 C 1.50696 * 109.52309 * 177.55671 * 10 9 8 13 13 H 1.08000 * 120.00237 * 245.70198 * 12 10 9 14 14 C 1.37880 * 119.99834 * 65.71009 * 12 10 9 15 15 N 1.31514 * 120.00233 * 359.97438 * 14 12 10 16 16 Si 1.86803 * 120.00090 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.47169 * 59.99605 * 16 14 12 18 18 H 1.48497 * 109.47201 * 179.97438 * 16 14 12 19 19 H 1.48508 * 109.46619 * 299.99606 * 16 14 12 20 20 H 1.08993 * 109.47451 * 54.93657 * 1 2 3 21 21 H 1.09004 * 109.47285 * 174.93865 * 1 2 3 22 22 H 1.09002 * 109.47103 * 294.93092 * 1 2 3 23 23 H 1.08999 * 109.47835 * 120.00140 * 2 1 3 24 24 H 1.09009 * 109.47129 * 300.00281 * 3 2 1 25 25 H 1.08999 * 109.46999 * 60.00208 * 3 2 1 26 26 H 1.08993 * 109.47523 * 180.02562 * 3 2 1 27 27 H 1.09001 * 109.45902 * 299.13313 * 6 4 2 28 28 H 1.08993 * 109.46073 * 59.11587 * 6 4 2 29 29 H 1.00897 * 110.99698 * 174.15616 * 7 6 4 30 30 H 1.08996 * 109.46306 * 181.75648 * 8 7 6 31 31 H 1.09000 * 109.46169 * 301.73736 * 8 7 6 32 32 H 1.09000 * 109.49751 * 60.76104 * 9 8 7 33 33 H 1.08992 * 109.50353 * 180.83978 * 9 8 7 34 34 H 0.97003 * 120.00388 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 1 1.6012 -1.7178 -1.2987 6 6 1.6440 0.0738 -2.4957 7 7 2.1514 -0.6071 -3.6937 8 6 3.6176 -0.6869 -3.6783 9 6 4.0725 -1.5045 -2.4672 10 6 3.5655 -0.8359 -1.1864 11 1 4.0022 0.1589 -1.0975 12 6 3.9592 -1.6687 0.0062 13 1 3.1988 -2.1480 0.6049 14 6 5.2902 -1.8185 0.3333 15 7 6.2163 -1.2351 -0.3958 16 14 5.7784 -2.8513 1.8113 17 1 5.2962 -4.2433 1.6235 18 1 7.2572 -2.8543 1.9465 19 1 5.1697 -2.2779 3.0386 20 1 -0.3634 0.5903 -0.8411 21 1 -0.3634 -1.0237 -0.0907 22 1 -0.3633 0.4332 0.9319 23 1 1.8934 -0.5138 0.8899 24 1 1.6766 1.9564 -0.8900 25 1 1.6767 1.9563 0.8900 26 1 3.1299 1.4426 -0.0005 27 1 0.5577 0.1450 -2.5510 28 1 2.0711 1.0749 -2.4387 29 1 1.8227 -0.1543 -4.5334 30 1 3.9648 -1.1682 -4.5925 31 1 4.0353 0.3179 -3.6155 32 1 3.6663 -2.5137 -2.5362 33 1 5.1613 -1.5510 -2.4477 34 1 7.1528 -1.3408 -0.1660 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259968334.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:06 Heat of formation + Delta-G solvation = -25.955392 kcal Electronic energy + Delta-G solvation = -13528.167646 eV Core-core repulsion = 11459.692740 eV Total energy + Delta-G solvation = -2068.474906 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.44325 -34.47350 -33.07638 -30.12360 -28.52062 -26.58236 -25.24913 -22.82412 -21.61275 -19.42376 -17.79395 -16.32118 -15.71842 -14.49204 -14.32867 -13.43210 -13.28314 -13.09423 -12.84049 -12.22821 -12.03113 -11.80512 -11.18765 -11.06802 -10.81130 -10.76334 -10.59454 -10.32129 -10.04485 -9.97897 -9.64665 -9.28940 -8.72285 -8.56326 -8.22868 -7.71981 -5.93154 -3.95851 3.35482 3.40065 3.42994 4.49365 4.93427 5.38241 5.60369 5.69605 5.73710 5.94269 6.00009 6.16183 6.19791 6.26690 6.31587 6.42671 6.48475 6.55281 6.64817 6.79467 6.90969 7.02843 7.11047 7.25101 7.32762 7.52378 7.67521 7.85630 8.02865 8.14099 8.16127 8.54802 9.07561 9.67351 11.14690 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.032057 B = 0.014249 C = 0.011079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.227993 B = 1964.612408 C = 2526.720292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.085 4.085 3 C -0.143 4.143 4 C -0.069 4.069 5 H 0.060 0.940 6 C 0.062 3.938 7 N -0.692 5.692 8 C 0.057 3.943 9 C -0.104 4.104 10 C 0.054 3.946 11 H 0.029 0.971 12 C -0.504 4.504 13 H 0.054 0.946 14 C 0.061 3.939 15 N -0.893 5.893 16 Si 0.885 3.115 17 H -0.278 1.278 18 H -0.289 1.289 19 H -0.278 1.278 20 H 0.046 0.954 21 H 0.049 0.951 22 H 0.042 0.958 23 H 0.081 0.919 24 H 0.043 0.957 25 H 0.038 0.962 26 H 0.065 0.935 27 H 0.056 0.944 28 H 0.024 0.976 29 H 0.323 0.677 30 H 0.053 0.947 31 H 0.018 0.982 32 H 0.042 0.958 33 H 0.081 0.919 34 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.061 3.252 -2.522 8.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.104 4.104 3 C -0.201 4.201 4 C -0.088 4.088 5 H 0.079 0.921 6 C -0.067 4.067 7 N -0.321 5.321 8 C -0.072 4.072 9 C -0.143 4.143 10 C 0.036 3.964 11 H 0.047 0.953 12 C -0.542 4.542 13 H 0.072 0.928 14 C -0.140 4.140 15 N -0.533 5.533 16 Si 0.714 3.286 17 H -0.204 1.204 18 H -0.215 1.215 19 H -0.204 1.204 20 H 0.065 0.935 21 H 0.068 0.932 22 H 0.061 0.939 23 H 0.099 0.901 24 H 0.062 0.938 25 H 0.057 0.943 26 H 0.084 0.916 27 H 0.074 0.926 28 H 0.043 0.957 29 H 0.139 0.861 30 H 0.071 0.929 31 H 0.036 0.964 32 H 0.061 0.939 33 H 0.100 0.900 34 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -6.934 2.643 -2.265 7.758 hybrid contribution 0.615 0.360 0.557 0.905 sum -6.319 3.003 -1.708 7.201 Atomic orbital electron populations 1.21917 0.97280 1.00884 1.00226 1.21039 0.93145 0.96085 1.00097 1.21876 1.02364 0.96296 0.99527 1.21230 0.99557 0.97299 0.90715 0.92120 1.22110 0.97867 0.95306 0.91383 1.60335 1.10889 1.56982 1.03930 1.22093 0.86436 0.98592 1.00054 1.21641 1.02126 0.97438 0.93078 1.18738 0.88280 0.96520 0.92875 0.95292 1.21143 0.91574 1.30316 1.11173 0.92795 1.24951 0.96805 0.95784 0.96430 1.69905 1.00296 1.44085 1.38980 0.86765 0.77199 0.81073 0.83584 1.20379 1.21485 1.20407 0.93542 0.93233 0.93863 0.90066 0.93841 0.94301 0.91574 0.92554 0.95740 0.86108 0.92894 0.96409 0.93937 0.90026 0.93161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 8.83 37.16 0.33 -1.94 16 2 C -0.08 -1.60 2.56 -90.62 -0.23 -1.83 16 3 C -0.14 -2.57 8.46 37.16 0.31 -2.26 16 4 C -0.07 -1.44 1.58 -90.54 -0.14 -1.58 16 5 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 6 C 0.06 1.14 5.10 -3.83 -0.02 1.12 16 7 N -0.69 -12.63 6.85 -113.82 -0.78 -13.41 16 8 C 0.06 1.14 6.55 -3.83 -0.03 1.12 16 9 C -0.10 -2.50 5.18 -26.65 -0.14 -2.64 16 10 C 0.05 1.33 1.38 -91.65 -0.13 1.21 16 11 H 0.03 0.78 6.48 -51.93 -0.34 0.45 16 12 C -0.50 -13.62 7.60 -34.44 -0.26 -13.88 16 13 H 0.05 1.45 7.13 -52.49 -0.37 1.08 16 14 C 0.06 1.68 5.33 -17.82 -0.10 1.59 16 15 N -0.89 -25.56 11.78 55.43 0.65 -24.91 16 16 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 17 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 18 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 H 0.05 0.67 6.85 -51.93 -0.36 0.31 16 21 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 22 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.08 1.71 6.76 -51.93 -0.35 1.36 16 24 H 0.04 0.71 6.32 -51.92 -0.33 0.39 16 25 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.07 1.36 6.53 -51.93 -0.34 1.02 16 27 H 0.06 0.93 6.74 -51.93 -0.35 0.58 16 28 H 0.02 0.45 6.29 -51.93 -0.33 0.13 16 29 H 0.32 4.94 8.90 -39.29 -0.35 4.59 16 30 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 31 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.04 1.05 8.14 -51.93 -0.42 0.62 16 33 H 0.08 2.16 6.61 -51.93 -0.34 1.81 16 34 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 255.95 15.07 3.86 3.86 Total: -1.00 -27.81 255.95 -7.24 -35.05 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -5.55 Total: 2.14 kcal Atomic # 6 Polarization: -18.71 SS G_CDS: -0.40 Total: -19.11 kcal Atomic # 7 Polarization: -38.19 SS G_CDS: -0.13 Total: -38.32 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -27.81 -7.24 -35.05 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259968334.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.092 kcal (2) G-P(sol) polarization free energy of solvation -27.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds