Wall clock time and date at job start Mon Mar 30 2020 02:22:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46988 * 2 1 4 4 C 1.52996 * 109.47342 * 120.00154 * 2 1 3 5 5 H 1.09000 * 109.53378 * 57.12368 * 4 2 1 6 6 C 1.53038 * 109.50462 * 297.02310 * 4 2 1 7 7 N 1.46842 * 109.52158 * 180.87816 * 6 4 2 8 8 C 1.46841 * 111.20146 * 61.74699 * 7 6 4 9 9 C 1.53036 * 109.52319 * 298.25634 * 8 7 6 10 10 C 1.53119 * 109.28135 * 59.17542 * 9 8 7 11 11 H 1.09004 * 109.57504 * 62.27962 * 10 9 8 12 12 C 1.50692 * 109.52855 * 182.44337 * 10 9 8 13 13 H 1.07999 * 120.00400 * 115.43048 * 12 10 9 14 14 C 1.37879 * 120.00182 * 295.16190 * 12 10 9 15 15 N 1.31522 * 119.99820 * 359.97438 * 14 12 10 16 16 Si 1.86795 * 120.00465 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47085 * 359.97438 * 16 14 12 18 18 H 1.48505 * 109.47059 * 119.99695 * 16 14 12 19 19 H 1.48493 * 109.47177 * 239.99615 * 16 14 12 20 20 H 1.08993 * 109.47265 * 65.97366 * 1 2 3 21 21 H 1.09000 * 109.46929 * 185.97137 * 1 2 3 22 22 H 1.08992 * 109.47020 * 305.96838 * 1 2 3 23 23 H 1.09007 * 109.47427 * 240.00674 * 2 1 3 24 24 H 1.08998 * 109.46731 * 179.97438 * 3 2 1 25 25 H 1.09000 * 109.47165 * 300.00114 * 3 2 1 26 26 H 1.08997 * 109.46822 * 60.00567 * 3 2 1 27 27 H 1.08991 * 109.46051 * 300.89710 * 6 4 2 28 28 H 1.08998 * 109.45577 * 60.87532 * 6 4 2 29 29 H 1.00909 * 110.99680 * 185.84067 * 7 6 4 30 30 H 1.08999 * 109.46358 * 58.26751 * 8 7 6 31 31 H 1.08995 * 109.46603 * 178.24955 * 8 7 6 32 32 H 1.09008 * 109.50131 * 299.23738 * 9 8 7 33 33 H 1.09005 * 109.50907 * 179.11571 * 9 8 7 34 34 H 0.97000 * 120.00247 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 1.6358 -1.7332 1.2763 6 6 1.5925 0.0415 2.4981 7 7 2.0995 -0.6388 3.6966 8 6 3.5676 -0.6680 3.7095 9 6 4.0743 -1.4519 2.4968 10 6 3.5697 -0.7826 1.2154 11 1 3.9733 0.2278 1.1478 12 6 4.0153 -1.5839 0.0195 13 1 3.2827 -2.0652 -0.6115 14 6 5.3580 -1.6981 -0.2725 15 7 6.2498 -1.1072 0.4925 16 14 5.9104 -2.6919 -1.7545 17 1 4.7216 -3.2521 -2.4459 18 1 6.6586 -1.8131 -2.6889 19 1 6.7902 -3.8011 -1.3066 20 1 -0.3633 0.4184 -0.9386 21 1 -0.3633 -1.0221 0.1069 22 1 -0.3633 0.6035 0.8317 23 1 1.8934 -0.5137 -0.8901 24 1 3.1300 1.4425 0.0005 25 1 1.6766 1.9564 -0.8900 26 1 1.6767 1.9563 0.8900 27 1 1.9856 1.0575 2.4635 28 1 0.5035 0.0743 2.5327 29 1 1.7390 -0.2098 4.5357 30 1 3.9515 0.3513 3.6693 31 1 3.9133 -1.1504 4.6238 32 1 3.7020 -2.4754 2.5436 33 1 5.1643 -1.4600 2.4981 34 1 7.1944 -1.1872 0.2869 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259968339.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:09 Heat of formation + Delta-G solvation = -25.752339 kcal Electronic energy + Delta-G solvation = -13533.255661 eV Core-core repulsion = 11464.789560 eV Total energy + Delta-G solvation = -2068.466101 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -38.44802 -34.47359 -33.08103 -30.11729 -28.51452 -26.58371 -25.24947 -22.82500 -21.61265 -19.43720 -17.78367 -16.31989 -15.72174 -14.48553 -14.34210 -13.40563 -13.27738 -13.10858 -12.84324 -12.25148 -12.03748 -11.80610 -11.17848 -11.07895 -10.83669 -10.76061 -10.54738 -10.29824 -10.04954 -9.98243 -9.63850 -9.29247 -8.72578 -8.54864 -8.23164 -7.72014 -5.93496 -3.96173 3.32661 3.41083 3.44950 4.49204 4.93592 5.37977 5.60204 5.69465 5.73643 5.94516 5.99977 6.16114 6.20313 6.26909 6.31771 6.42925 6.48389 6.55024 6.65151 6.79605 6.92304 7.03492 7.10398 7.25090 7.32599 7.52716 7.67744 7.85983 8.02926 8.14208 8.16812 8.54728 9.07657 9.67232 11.14224 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.032181 B = 0.014256 C = 0.011082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.863455 B = 1963.680840 C = 2526.084760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.084 4.084 3 C -0.144 4.144 4 C -0.069 4.069 5 H 0.060 0.940 6 C 0.062 3.938 7 N -0.692 5.692 8 C 0.057 3.943 9 C -0.105 4.105 10 C 0.053 3.947 11 H 0.029 0.971 12 C -0.502 4.502 13 H 0.055 0.945 14 C 0.060 3.940 15 N -0.893 5.893 16 Si 0.885 3.115 17 H -0.274 1.274 18 H -0.286 1.286 19 H -0.286 1.286 20 H 0.042 0.958 21 H 0.049 0.951 22 H 0.046 0.954 23 H 0.080 0.920 24 H 0.067 0.933 25 H 0.038 0.962 26 H 0.042 0.958 27 H 0.024 0.976 28 H 0.056 0.944 29 H 0.323 0.677 30 H 0.018 0.982 31 H 0.053 0.947 32 H 0.042 0.958 33 H 0.083 0.917 34 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.233 3.015 2.397 8.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.103 4.103 3 C -0.201 4.201 4 C -0.088 4.088 5 H 0.079 0.921 6 C -0.067 4.067 7 N -0.321 5.321 8 C -0.072 4.072 9 C -0.143 4.143 10 C 0.035 3.965 11 H 0.047 0.953 12 C -0.540 4.540 13 H 0.073 0.927 14 C -0.141 4.141 15 N -0.533 5.533 16 Si 0.713 3.287 17 H -0.198 1.198 18 H -0.212 1.212 19 H -0.212 1.212 20 H 0.061 0.939 21 H 0.068 0.932 22 H 0.065 0.935 23 H 0.098 0.902 24 H 0.086 0.914 25 H 0.057 0.943 26 H 0.061 0.939 27 H 0.042 0.958 28 H 0.075 0.925 29 H 0.139 0.861 30 H 0.036 0.964 31 H 0.071 0.929 32 H 0.061 0.939 33 H 0.101 0.899 34 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -7.091 2.409 2.131 7.786 hybrid contribution 0.635 0.399 -0.530 0.918 sum -6.456 2.809 1.602 7.220 Atomic orbital electron populations 1.21921 0.97298 1.00882 1.00237 1.21027 0.93114 0.96145 1.00005 1.21876 1.02500 0.96218 0.99482 1.21229 0.99376 0.97497 0.90714 0.92114 1.22103 0.97880 0.95267 0.91405 1.60341 1.09575 1.58219 1.03991 1.22092 0.86498 0.98505 1.00081 1.21646 1.02028 0.97606 0.93051 1.18758 0.88202 0.96578 0.92973 0.95292 1.21223 0.91521 1.31129 1.10142 0.92681 1.24957 0.96973 0.95738 0.96382 1.69925 1.01008 1.44128 1.38213 0.86646 0.78676 0.80100 0.83241 1.19841 1.21246 1.21203 0.93862 0.93237 0.93516 0.90194 0.91415 0.94330 0.93889 0.95792 0.92524 0.86115 0.96421 0.92896 0.93946 0.89882 0.93282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 8.74 37.16 0.32 -1.95 16 2 C -0.08 -1.58 2.55 -90.62 -0.23 -1.81 16 3 C -0.14 -2.59 8.48 37.16 0.32 -2.27 16 4 C -0.07 -1.44 1.60 -90.54 -0.15 -1.59 16 5 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 6 C 0.06 1.14 5.12 -3.84 -0.02 1.12 16 7 N -0.69 -12.63 6.84 -113.83 -0.78 -13.41 16 8 C 0.06 1.14 6.55 -3.84 -0.03 1.12 16 9 C -0.10 -2.52 5.17 -26.65 -0.14 -2.65 16 10 C 0.05 1.31 1.35 -91.65 -0.12 1.18 16 11 H 0.03 0.78 6.39 -51.93 -0.33 0.45 16 12 C -0.50 -13.55 7.67 -34.44 -0.26 -13.82 16 13 H 0.05 1.49 7.07 -52.49 -0.37 1.12 16 14 C 0.06 1.65 5.33 -17.82 -0.09 1.56 16 15 N -0.89 -25.53 11.71 55.43 0.65 -24.88 16 16 Si 0.88 21.40 29.54 -169.99 -5.02 16.38 16 17 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 18 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 19 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 20 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 21 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 22 H 0.05 0.67 6.84 -51.93 -0.36 0.32 16 23 H 0.08 1.67 6.80 -51.93 -0.35 1.32 16 24 H 0.07 1.40 6.45 -51.93 -0.33 1.07 16 25 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.04 0.71 6.35 -51.93 -0.33 0.38 16 27 H 0.02 0.45 6.32 -51.93 -0.33 0.12 16 28 H 0.06 0.93 6.69 -51.93 -0.35 0.59 16 29 H 0.32 4.94 8.90 -39.29 -0.35 4.59 16 30 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 32 H 0.04 1.05 8.14 -51.92 -0.42 0.62 16 33 H 0.08 2.20 6.53 -51.93 -0.34 1.86 16 34 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 255.64 15.07 3.85 3.85 Total: -1.00 -27.83 255.64 -7.24 -35.07 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -5.53 Total: 2.11 kcal Atomic # 6 Polarization: -18.71 SS G_CDS: -0.40 Total: -19.11 kcal Atomic # 7 Polarization: -38.17 SS G_CDS: -0.13 Total: -38.30 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -27.83 -7.24 -35.07 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259968339.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.316 kcal (2) G-P(sol) polarization free energy of solvation -27.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds