Wall clock time and date at job start Mon Mar 30 2020 02:22:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46988 * 2 1 4 4 C 1.52996 * 109.47342 * 120.00154 * 2 1 3 5 5 H 1.09000 * 109.53378 * 57.12368 * 4 2 1 6 6 C 1.53038 * 109.50462 * 297.02310 * 4 2 1 7 7 N 1.46842 * 109.52158 * 180.87816 * 6 4 2 8 8 C 1.46841 * 111.20146 * 61.74699 * 7 6 4 9 9 C 1.53036 * 109.52319 * 298.25634 * 8 7 6 10 10 C 1.53119 * 109.28135 * 59.17542 * 9 8 7 11 11 H 1.09004 * 109.57504 * 62.27962 * 10 9 8 12 12 C 1.50692 * 109.52855 * 182.44337 * 10 9 8 13 13 H 1.07999 * 120.00400 * 115.43048 * 12 10 9 14 14 C 1.37879 * 120.00182 * 295.16190 * 12 10 9 15 15 N 1.31522 * 119.99820 * 359.97438 * 14 12 10 16 16 Si 1.86795 * 120.00465 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47085 * 359.97438 * 16 14 12 18 18 H 1.48505 * 109.47059 * 119.99695 * 16 14 12 19 19 H 1.48493 * 109.47177 * 239.99615 * 16 14 12 20 20 H 1.08993 * 109.47265 * 65.97366 * 1 2 3 21 21 H 1.09000 * 109.46929 * 185.97137 * 1 2 3 22 22 H 1.08992 * 109.47020 * 305.96838 * 1 2 3 23 23 H 1.09007 * 109.47427 * 240.00674 * 2 1 3 24 24 H 1.08998 * 109.46731 * 179.97438 * 3 2 1 25 25 H 1.09000 * 109.47165 * 300.00114 * 3 2 1 26 26 H 1.08997 * 109.46822 * 60.00567 * 3 2 1 27 27 H 1.08991 * 109.46051 * 300.89710 * 6 4 2 28 28 H 1.08998 * 109.45577 * 60.87532 * 6 4 2 29 29 H 1.00909 * 110.99680 * 185.84067 * 7 6 4 30 30 H 1.08999 * 109.46358 * 58.26751 * 8 7 6 31 31 H 1.08995 * 109.46603 * 178.24955 * 8 7 6 32 32 H 1.09008 * 109.50131 * 299.23738 * 9 8 7 33 33 H 1.09005 * 109.50907 * 179.11571 * 9 8 7 34 34 H 0.97000 * 120.00247 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 1.6358 -1.7332 1.2763 6 6 1.5925 0.0415 2.4981 7 7 2.0995 -0.6388 3.6966 8 6 3.5676 -0.6680 3.7095 9 6 4.0743 -1.4519 2.4968 10 6 3.5697 -0.7826 1.2154 11 1 3.9733 0.2278 1.1478 12 6 4.0153 -1.5839 0.0195 13 1 3.2827 -2.0652 -0.6115 14 6 5.3580 -1.6981 -0.2725 15 7 6.2498 -1.1072 0.4925 16 14 5.9104 -2.6919 -1.7545 17 1 4.7216 -3.2521 -2.4459 18 1 6.6586 -1.8131 -2.6889 19 1 6.7902 -3.8011 -1.3066 20 1 -0.3633 0.4184 -0.9386 21 1 -0.3633 -1.0221 0.1069 22 1 -0.3633 0.6035 0.8317 23 1 1.8934 -0.5137 -0.8901 24 1 3.1300 1.4425 0.0005 25 1 1.6766 1.9564 -0.8900 26 1 1.6767 1.9563 0.8900 27 1 1.9856 1.0575 2.4635 28 1 0.5035 0.0743 2.5327 29 1 1.7390 -0.2098 4.5357 30 1 3.9515 0.3513 3.6693 31 1 3.9133 -1.1504 4.6238 32 1 3.7020 -2.4754 2.5436 33 1 5.1643 -1.4600 2.4981 34 1 7.1944 -1.1872 0.2869 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259968339.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:07 Heat of formation + Delta-G solvation = -43.593125 kcal Electronic energy + Delta-G solvation = -13534.029295 eV Core-core repulsion = 11464.789560 eV Total energy + Delta-G solvation = -2069.239735 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -40.10235 -35.99375 -35.07875 -32.01942 -30.10805 -27.95967 -27.22918 -24.41044 -23.41977 -21.13837 -19.45645 -18.36178 -17.32703 -16.45497 -15.91200 -14.98374 -14.94287 -14.72457 -14.50129 -13.93250 -13.71627 -13.28604 -12.93418 -12.72487 -12.57346 -12.49956 -12.27842 -12.06126 -11.85152 -11.67155 -11.27808 -11.10711 -10.59120 -10.38804 -10.28827 -9.23514 -8.05707 -6.14551 1.38018 1.40759 1.51139 2.45092 3.23195 3.46978 4.13340 4.20803 4.25025 4.44215 4.48946 4.58969 4.69641 4.83078 4.90068 4.91357 4.96844 5.11960 5.14013 5.22600 5.29929 5.31269 5.41899 5.57331 5.68205 5.69939 5.75677 6.01001 6.11809 6.30653 6.47296 6.73102 6.97727 7.51534 9.00871 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.032181 B = 0.014256 C = 0.011082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.863455 B = 1963.680840 C = 2526.084760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.085 4.085 3 C -0.137 4.137 4 C -0.065 4.065 5 H 0.043 0.957 6 C 0.067 3.933 7 N -0.692 5.692 8 C 0.067 3.933 9 C -0.102 4.102 10 C 0.053 3.947 11 H 0.000 1.000 12 C -0.513 4.513 13 H 0.048 0.952 14 C 0.011 3.989 15 N -0.921 5.921 16 Si 0.944 3.056 17 H -0.268 1.268 18 H -0.283 1.283 19 H -0.283 1.283 20 H 0.059 0.941 21 H 0.050 0.950 22 H 0.064 0.936 23 H 0.050 0.950 24 H 0.030 0.970 25 H 0.058 0.942 26 H 0.060 0.940 27 H 0.025 0.975 28 H 0.087 0.913 29 H 0.347 0.653 30 H 0.013 0.987 31 H 0.073 0.927 32 H 0.027 0.973 33 H 0.050 0.950 34 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.041 3.427 2.658 10.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.104 4.104 3 C -0.194 4.194 4 C -0.084 4.084 5 H 0.062 0.938 6 C -0.061 4.061 7 N -0.324 5.324 8 C -0.062 4.062 9 C -0.140 4.140 10 C 0.035 3.965 11 H 0.019 0.981 12 C -0.552 4.552 13 H 0.066 0.934 14 C -0.187 4.187 15 N -0.562 5.562 16 Si 0.771 3.229 17 H -0.193 1.193 18 H -0.209 1.209 19 H -0.210 1.210 20 H 0.078 0.922 21 H 0.069 0.931 22 H 0.083 0.917 23 H 0.069 0.931 24 H 0.049 0.951 25 H 0.077 0.923 26 H 0.079 0.921 27 H 0.043 0.957 28 H 0.105 0.895 29 H 0.166 0.834 30 H 0.032 0.968 31 H 0.091 0.909 32 H 0.046 0.954 33 H 0.069 0.931 34 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -8.918 2.825 2.402 9.658 hybrid contribution 1.201 0.265 -0.611 1.374 sum -7.717 3.090 1.791 8.503 Atomic orbital electron populations 1.21824 0.94006 1.01585 1.02016 1.20974 0.95827 0.95914 0.97645 1.21794 1.00037 0.96159 1.01389 1.21115 0.96421 0.97454 0.93440 0.93816 1.22056 0.99525 0.94552 0.90003 1.60233 1.08117 1.58828 1.05191 1.21871 0.87873 0.97636 0.98814 1.21480 1.00076 0.97415 0.95065 1.18690 0.91049 0.94395 0.92385 0.98147 1.21540 0.91602 1.31063 1.10961 0.93369 1.25668 0.97212 0.96858 0.98928 1.70049 1.01114 1.45354 1.39647 0.85715 0.78254 0.78724 0.80251 1.19256 1.20865 1.20953 0.92152 0.93120 0.91658 0.93142 0.95130 0.92266 0.92093 0.95701 0.89508 0.83421 0.96848 0.90858 0.95442 0.93093 0.93368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.84 8.74 71.98 0.63 -3.21 16 2 C -0.08 -3.10 2.55 -10.79 -0.03 -3.13 16 3 C -0.14 -4.77 8.48 71.98 0.61 -4.16 16 4 C -0.07 -2.69 1.60 -10.74 -0.02 -2.70 16 5 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 6 C 0.07 2.30 5.12 86.33 0.44 2.74 16 7 N -0.69 -23.54 6.84 -514.05 -3.52 -27.06 16 8 C 0.07 2.63 6.55 86.33 0.57 3.20 16 9 C -0.10 -4.99 5.17 30.65 0.16 -4.83 16 10 C 0.05 2.68 1.35 -11.46 -0.02 2.66 16 11 H 0.00 0.03 6.39 -2.39 -0.02 0.01 16 12 C -0.51 -28.53 7.67 25.60 0.20 -28.33 16 13 H 0.05 2.68 7.07 -2.91 -0.02 2.65 16 14 C 0.01 0.62 5.33 84.65 0.45 1.07 16 15 N -0.92 -54.27 11.71 21.45 0.25 -54.02 16 16 Si 0.94 44.69 29.54 68.60 2.03 46.72 16 17 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 18 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 19 H -0.28 -13.24 7.11 99.48 0.71 -12.54 16 20 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 21 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 22 H 0.06 1.59 6.84 -2.39 -0.02 1.58 16 23 H 0.05 2.12 6.80 -2.38 -0.02 2.11 16 24 H 0.03 1.27 6.45 -2.39 -0.02 1.26 16 25 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 26 H 0.06 1.88 6.35 -2.39 -0.02 1.87 16 27 H 0.02 0.86 6.32 -2.39 -0.02 0.84 16 28 H 0.09 2.49 6.69 -2.39 -0.02 2.47 16 29 H 0.35 9.35 8.90 -89.69 -0.80 8.55 16 30 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 32 H 0.03 1.37 8.14 -2.38 -0.02 1.35 16 33 H 0.05 2.80 6.53 -2.38 -0.02 2.78 16 34 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 Total: -1.00 -60.91 255.64 2.02 -58.89 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: 0.27 Total: 12.16 kcal Atomic # 6 Polarization: -39.68 SS G_CDS: 2.99 Total: -36.69 kcal Atomic # 7 Polarization: -77.81 SS G_CDS: -3.27 Total: -81.08 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -60.91 2.02 -58.89 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259968339.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.297 kcal (2) G-P(sol) polarization free energy of solvation -60.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds