Wall clock time and date at job start Mon Mar 30 2020 02:22:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46742 * 2 1 4 4 C 1.53000 * 109.46742 * 179.97438 * 3 2 1 5 5 H 1.09006 * 109.53707 * 54.90374 * 4 3 2 6 6 C 1.53037 * 109.50488 * 294.80364 * 4 3 2 7 7 N 1.46850 * 109.52028 * 180.87945 * 6 4 3 8 8 C 1.46929 * 111.22205 * 61.74456 * 7 6 4 9 9 C 1.53037 * 109.47910 * 298.28247 * 8 7 6 10 10 C 1.53114 * 109.31211 * 59.15772 * 9 8 7 11 11 H 1.09006 * 109.52545 * 62.23190 * 10 9 8 12 12 C 1.50700 * 109.52705 * 182.42085 * 10 9 8 13 13 H 1.08002 * 119.99949 * 119.99392 * 12 10 9 14 14 C 1.37875 * 119.99792 * 300.00459 * 12 10 9 15 15 N 1.31516 * 120.00107 * 359.97438 * 14 12 10 16 16 Si 1.86809 * 119.99911 * 179.97438 * 14 12 10 17 17 H 1.48502 * 109.46908 * 89.99836 * 16 14 12 18 18 H 1.48502 * 109.46866 * 209.99715 * 16 14 12 19 19 H 1.48499 * 109.46998 * 329.99683 * 16 14 12 20 20 H 1.08994 * 109.47206 * 59.99938 * 1 2 3 21 21 H 1.09001 * 109.46843 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47070 * 299.99525 * 1 2 3 23 23 H 1.09001 * 109.47070 * 240.00475 * 2 1 3 24 24 H 1.09002 * 109.47489 * 120.00034 * 2 1 3 25 25 H 1.09001 * 109.46950 * 60.00402 * 3 2 1 26 26 H 1.08994 * 109.47320 * 299.99992 * 3 2 1 27 27 H 1.08997 * 109.46525 * 300.89453 * 6 4 3 28 28 H 1.08995 * 109.46235 * 60.86989 * 6 4 3 29 29 H 1.00900 * 111.00280 * 297.64221 * 7 6 4 30 30 H 1.08994 * 109.51866 * 178.25481 * 8 7 6 31 31 H 1.09007 * 109.45009 * 58.26164 * 8 7 6 32 32 H 1.09002 * 109.50283 * 299.19589 * 9 8 7 33 33 H 1.09003 * 109.50113 * 179.11776 * 9 8 7 34 34 H 0.96997 * 120.00031 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 1 3.9348 0.8518 -0.8396 6 6 4.0803 0.8376 1.3104 7 7 5.5487 0.8567 1.3204 8 6 6.0632 2.2311 1.2482 9 6 5.6111 2.8771 -0.0634 10 6 4.0812 2.8804 -0.1252 11 1 3.6848 3.4809 0.6937 12 6 3.6316 3.4615 -1.4409 13 1 3.0359 2.8674 -2.1182 14 6 3.9807 4.7514 -1.7801 15 7 4.7058 5.4750 -0.9553 16 14 3.4239 5.4715 -3.4115 17 1 2.1088 6.1384 -3.2350 18 1 4.4234 6.4644 -3.8811 19 1 3.2970 4.3842 -4.4149 20 1 -0.3633 0.5138 -0.8899 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 1.6766 1.9563 0.8900 26 1 1.6766 1.9564 -0.8899 27 1 3.7039 1.4207 2.1508 28 1 3.7300 -0.1909 1.3962 29 1 5.9228 0.2911 0.5732 30 1 7.1523 2.2148 1.2886 31 1 5.6774 2.8077 2.0890 32 1 6.0081 2.3089 -0.9046 33 1 5.9795 3.9019 -0.1102 34 1 4.9518 6.3823 -1.1941 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260157422.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:11 Heat of formation + Delta-G solvation = -34.275243 kcal Electronic energy + Delta-G solvation = -13233.994503 eV Core-core repulsion = 11165.158822 eV Total energy + Delta-G solvation = -2068.835682 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.30275 -34.45807 -33.13100 -30.52328 -29.66355 -25.86407 -24.74615 -22.23509 -21.43984 -19.81354 -19.01755 -16.43400 -15.32581 -14.63433 -14.31198 -13.68774 -13.46418 -13.20029 -12.86509 -12.07216 -11.93580 -11.68050 -11.44704 -11.09852 -10.99088 -10.78267 -10.66805 -10.52419 -10.14519 -10.05760 -9.79670 -9.45755 -9.14917 -8.70070 -8.35768 -7.48190 -5.96152 -4.02922 3.29392 3.36495 3.39358 4.43759 5.07813 5.29860 5.41008 5.44036 5.61367 5.75153 5.94284 6.05029 6.16897 6.22251 6.29366 6.32961 6.42612 6.47009 6.57965 6.64854 6.67721 6.92157 7.07922 7.13914 7.21965 7.38674 7.61945 7.79910 8.00275 8.03974 8.17598 8.47470 9.00262 9.61326 11.08229 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.026280 B = 0.013903 C = 0.009580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.187859 B = 2013.421414 C = 2922.050109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.126 4.126 3 C -0.103 4.103 4 C -0.113 4.113 5 H 0.052 0.948 6 C 0.061 3.939 7 N -0.693 5.693 8 C 0.052 3.948 9 C -0.145 4.145 10 C 0.057 3.943 11 H 0.024 0.976 12 C -0.507 4.507 13 H 0.055 0.945 14 C 0.060 3.940 15 N -0.891 5.891 16 Si 0.887 3.113 17 H -0.282 1.282 18 H -0.287 1.287 19 H -0.275 1.275 20 H 0.052 0.948 21 H 0.044 0.956 22 H 0.050 0.950 23 H 0.054 0.946 24 H 0.056 0.944 25 H 0.051 0.949 26 H 0.070 0.930 27 H 0.061 0.939 28 H 0.058 0.942 29 H 0.330 0.670 30 H 0.053 0.947 31 H 0.061 0.939 32 H 0.032 0.968 33 H 0.093 0.907 34 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.627 -7.600 2.208 8.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.164 4.164 3 C -0.141 4.141 4 C -0.133 4.133 5 H 0.071 0.929 6 C -0.068 4.068 7 N -0.320 5.320 8 C -0.077 4.077 9 C -0.184 4.184 10 C 0.038 3.962 11 H 0.042 0.958 12 C -0.546 4.546 13 H 0.073 0.927 14 C -0.140 4.140 15 N -0.530 5.530 16 Si 0.715 3.285 17 H -0.208 1.208 18 H -0.213 1.213 19 H -0.200 1.200 20 H 0.071 0.929 21 H 0.063 0.937 22 H 0.069 0.931 23 H 0.073 0.927 24 H 0.074 0.926 25 H 0.069 0.931 26 H 0.089 0.911 27 H 0.080 0.920 28 H 0.076 0.924 29 H 0.146 0.854 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.051 0.949 33 H 0.111 0.889 34 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -2.488 -7.449 2.935 8.384 hybrid contribution -0.466 0.788 -1.931 2.137 sum -2.954 -6.661 1.003 7.356 Atomic orbital electron populations 1.21771 0.96813 1.00519 1.01638 1.21637 0.94978 0.98657 1.01127 1.21508 0.95872 0.94404 1.02288 1.21911 0.94914 1.00088 0.96381 0.92908 1.22102 0.87651 0.99432 0.97628 1.60874 1.07742 1.12595 1.50784 1.22125 0.97920 0.88440 0.99184 1.22267 0.99765 1.02627 0.93757 1.18666 0.91283 0.89278 0.96958 0.95828 1.21205 1.32293 0.97896 1.03168 0.92722 1.24967 0.95189 0.97168 0.96715 1.69878 1.37691 1.09496 1.35938 0.86678 0.78406 0.78978 0.84434 1.20774 1.21324 1.20040 0.92933 0.93655 0.93063 0.92743 0.92570 0.93061 0.91096 0.92014 0.92356 0.85433 0.92805 0.92093 0.94888 0.88873 0.93137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.91 37.16 0.37 -1.63 16 2 C -0.13 -1.91 5.69 -26.73 -0.15 -2.06 16 3 C -0.10 -1.91 4.55 -26.73 -0.12 -2.03 16 4 C -0.11 -2.28 1.79 -90.54 -0.16 -2.44 16 5 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 6 C 0.06 1.11 5.58 -3.83 -0.02 1.09 16 7 N -0.69 -12.57 6.87 -113.75 -0.78 -13.35 16 8 C 0.05 1.04 6.56 -3.79 -0.02 1.02 16 9 C -0.14 -3.39 5.10 -26.65 -0.14 -3.52 16 10 C 0.06 1.38 1.68 -91.65 -0.15 1.23 16 11 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 12 C -0.51 -13.69 7.79 -34.44 -0.27 -13.95 16 13 H 0.05 1.47 6.90 -52.49 -0.36 1.11 16 14 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16 15 N -0.89 -25.39 11.35 55.43 0.63 -24.76 16 16 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 17 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 18 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 19 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 20 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 21 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 22 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 23 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 24 H 0.06 0.80 6.59 -51.93 -0.34 0.46 16 25 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 26 H 0.07 1.46 6.65 -51.93 -0.35 1.11 16 27 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 28 H 0.06 0.94 6.61 -51.93 -0.34 0.60 16 29 H 0.33 5.63 8.86 -39.29 -0.35 5.28 16 30 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.06 1.25 8.14 -51.92 -0.42 0.83 16 32 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.09 2.45 6.15 -51.93 -0.32 2.13 16 34 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 262.66 15.07 3.96 3.96 Total: -1.00 -27.40 262.66 -7.83 -35.23 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -5.85 Total: 3.37 kcal Atomic # 6 Polarization: -19.97 SS G_CDS: -0.77 Total: -20.74 kcal Atomic # 7 Polarization: -37.96 SS G_CDS: -0.15 Total: -38.11 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -27.40 -7.83 -35.23 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260157422.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.950 kcal (2) G-P(sol) polarization free energy of solvation -27.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds