Wall clock time and date at job start Mon Mar 30 2020 02:22:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.46939 * 2 1 4 4 C 1.53002 * 109.46626 * 180.02562 * 3 2 1 5 5 H 1.08997 * 109.53863 * 305.09713 * 4 3 2 6 6 C 1.53038 * 109.50515 * 65.19838 * 4 3 2 7 7 N 1.46830 * 109.51757 * 179.11465 * 6 4 3 8 8 C 1.46847 * 111.21086 * 298.25173 * 7 6 4 9 9 C 1.53044 * 109.51335 * 61.74856 * 8 7 6 10 10 C 1.53117 * 109.27792 * 300.82256 * 9 8 7 11 11 H 1.08998 * 109.52156 * 297.68928 * 10 9 8 12 12 C 1.50693 * 109.52032 * 177.55923 * 10 9 8 13 13 H 1.08002 * 120.00206 * 239.99766 * 12 10 9 14 14 C 1.37878 * 119.99786 * 60.00621 * 12 10 9 15 15 N 1.31509 * 120.00327 * 359.97438 * 14 12 10 16 16 Si 1.86803 * 119.99772 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.47158 * 359.97438 * 16 14 12 18 18 H 1.48502 * 109.47417 * 119.99692 * 16 14 12 19 19 H 1.48503 * 109.47093 * 239.99610 * 16 14 12 20 20 H 1.09001 * 109.46963 * 299.99825 * 1 2 3 21 21 H 1.08997 * 109.47248 * 59.99536 * 1 2 3 22 22 H 1.09001 * 109.46991 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46963 * 240.00175 * 2 1 3 24 24 H 1.08997 * 109.47248 * 120.00464 * 2 1 3 25 25 H 1.08997 * 109.47505 * 60.00594 * 3 2 1 26 26 H 1.08997 * 109.47070 * 300.00023 * 3 2 1 27 27 H 1.08995 * 109.46433 * 299.13417 * 6 4 3 28 28 H 1.09004 * 109.46142 * 59.11359 * 6 4 3 29 29 H 1.00904 * 110.98205 * 174.15538 * 7 6 4 30 30 H 1.09002 * 109.46448 * 301.73578 * 8 7 6 31 31 H 1.08994 * 109.45958 * 181.75943 * 8 7 6 32 32 H 1.09001 * 109.49858 * 60.76701 * 9 8 7 33 33 H 1.09000 * 109.49965 * 180.88251 * 9 8 7 34 34 H 0.97004 * 120.00356 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 1 3.9349 0.8517 0.8396 6 6 4.0804 0.8375 -1.3104 7 7 5.5485 0.8567 -1.3204 8 6 6.0624 2.2304 -1.2484 9 6 5.6112 2.8769 0.0634 10 6 4.0813 2.8803 0.1252 11 1 3.6850 3.4817 -0.6929 12 6 3.6318 3.4613 1.4410 13 1 3.0361 2.8672 2.1183 14 6 3.9810 4.7513 1.7802 15 7 4.7066 5.4745 0.9557 16 14 3.4232 5.4717 3.4110 17 1 2.6242 4.4619 4.1508 18 1 4.6114 5.8506 4.2171 19 1 2.5901 6.6754 3.1613 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 1.8934 -0.5139 0.8899 25 1 1.6768 1.9563 0.8900 26 1 1.6766 1.9563 -0.8900 27 1 3.7300 -0.1910 -1.3963 28 1 3.7040 1.4208 -2.1509 29 1 5.9107 0.3771 -2.1309 30 1 5.6766 2.8070 -2.0891 31 1 7.1515 2.2133 -1.2891 32 1 6.0082 2.3086 0.9045 33 1 5.9796 3.9017 0.1095 34 1 4.9526 6.3820 1.1945 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260157430.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:12 Heat of formation + Delta-G solvation = -31.263673 kcal Electronic energy + Delta-G solvation = -13212.949324 eV Core-core repulsion = 11144.244233 eV Total energy + Delta-G solvation = -2068.705090 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.10745 -34.44106 -33.16074 -30.61423 -29.67645 -25.85836 -24.88106 -22.20821 -21.32195 -19.80145 -18.45833 -16.41688 -15.57777 -14.65426 -14.47696 -13.64663 -13.27982 -12.99520 -12.80177 -12.63449 -12.02132 -11.74606 -11.37228 -11.02158 -10.87751 -10.69087 -10.52434 -10.40067 -10.07813 -10.01821 -9.70892 -9.39935 -8.74519 -8.57068 -8.24778 -7.75321 -5.92734 -3.97149 3.32493 3.40735 3.44614 4.48515 4.93481 5.36156 5.43619 5.45713 5.64693 5.84411 5.89330 6.09126 6.20170 6.23482 6.26960 6.31989 6.38125 6.41789 6.65370 6.70476 6.74435 7.00347 7.14808 7.21221 7.28090 7.52188 7.68767 7.85379 8.02568 8.14076 8.21474 8.54103 9.06181 9.66548 11.13377 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.026215 B = 0.013883 C = 0.009539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.838825 B = 2016.317283 C = 2934.490202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.126 4.126 3 C -0.105 4.105 4 C -0.075 4.075 5 H 0.062 0.938 6 C 0.065 3.935 7 N -0.691 5.691 8 C 0.057 3.943 9 C -0.107 4.107 10 C 0.054 3.946 11 H 0.019 0.981 12 C -0.503 4.503 13 H 0.056 0.944 14 C 0.059 3.941 15 N -0.893 5.893 16 Si 0.887 3.113 17 H -0.274 1.274 18 H -0.285 1.285 19 H -0.286 1.286 20 H 0.052 0.948 21 H 0.049 0.951 22 H 0.044 0.956 23 H 0.053 0.947 24 H 0.056 0.944 25 H 0.074 0.926 26 H 0.048 0.952 27 H 0.058 0.942 28 H 0.018 0.982 29 H 0.323 0.677 30 H 0.017 0.983 31 H 0.053 0.947 32 H 0.041 0.959 33 H 0.092 0.908 34 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.664 -7.567 -3.646 8.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.164 4.164 3 C -0.143 4.143 4 C -0.094 4.094 5 H 0.081 0.919 6 C -0.064 4.064 7 N -0.321 5.321 8 C -0.072 4.072 9 C -0.145 4.145 10 C 0.035 3.965 11 H 0.037 0.963 12 C -0.541 4.541 13 H 0.075 0.925 14 C -0.141 4.141 15 N -0.532 5.532 16 Si 0.715 3.285 17 H -0.198 1.198 18 H -0.212 1.212 19 H -0.212 1.212 20 H 0.071 0.929 21 H 0.068 0.932 22 H 0.063 0.937 23 H 0.072 0.928 24 H 0.075 0.925 25 H 0.092 0.908 26 H 0.067 0.933 27 H 0.076 0.924 28 H 0.036 0.964 29 H 0.139 0.861 30 H 0.035 0.965 31 H 0.072 0.928 32 H 0.060 0.940 33 H 0.110 0.890 34 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -2.536 -7.484 -2.976 8.443 hybrid contribution -0.410 0.824 -0.087 0.925 sum -2.946 -6.660 -3.063 7.900 Atomic orbital electron populations 1.21777 0.96873 1.00487 1.01615 1.21633 0.94868 0.98674 1.01192 1.21564 0.96054 0.94422 1.02302 1.21233 0.93502 0.99494 0.95160 0.91914 1.22041 0.87327 0.98956 0.98099 1.60355 1.08532 1.17754 1.45431 1.22116 0.97732 0.87634 0.99737 1.21673 0.99268 1.00915 0.92657 1.18698 0.91627 0.89334 0.96795 0.96267 1.21250 1.32034 0.97785 1.03073 0.92535 1.24968 0.95266 0.97187 0.96700 1.69888 1.37976 1.09483 1.35904 0.86619 0.78421 0.79064 0.84380 1.19831 1.21158 1.21228 0.92873 0.93157 0.93678 0.92782 0.92499 0.90773 0.93278 0.92403 0.96409 0.86123 0.96466 0.92849 0.93973 0.89023 0.93254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 9.91 37.16 0.37 -1.65 16 2 C -0.13 -1.95 5.69 -26.73 -0.15 -2.10 16 3 C -0.11 -2.00 4.55 -26.73 -0.12 -2.12 16 4 C -0.08 -1.58 1.81 -90.53 -0.16 -1.74 16 5 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 6 C 0.06 1.20 5.57 -3.84 -0.02 1.18 16 7 N -0.69 -12.73 6.84 -113.83 -0.78 -13.51 16 8 C 0.06 1.15 6.55 -3.83 -0.03 1.12 16 9 C -0.11 -2.60 5.12 -26.65 -0.14 -2.73 16 10 C 0.05 1.35 1.68 -91.65 -0.15 1.20 16 11 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 12 C -0.50 -13.73 7.79 -34.44 -0.27 -14.00 16 13 H 0.06 1.53 6.90 -52.49 -0.36 1.17 16 14 C 0.06 1.64 5.30 -17.82 -0.09 1.55 16 15 N -0.89 -25.63 11.35 55.43 0.63 -25.00 16 16 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 17 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 18 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 19 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 20 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 21 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 22 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 23 H 0.05 0.78 6.59 -51.93 -0.34 0.44 16 24 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 25 H 0.07 1.54 6.65 -51.93 -0.35 1.19 16 26 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.06 0.95 6.61 -51.93 -0.34 0.61 16 28 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.32 4.97 8.90 -39.29 -0.35 4.62 16 30 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 32 H 0.04 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.09 2.46 6.15 -51.93 -0.32 2.14 16 34 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 262.69 15.07 3.96 3.96 Total: -1.00 -28.09 262.69 -7.83 -35.92 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -5.85 Total: 1.50 kcal Atomic # 6 Polarization: -18.53 SS G_CDS: -0.77 Total: -19.30 kcal Atomic # 7 Polarization: -38.36 SS G_CDS: -0.15 Total: -38.51 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -28.09 -7.83 -35.92 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260157430.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.659 kcal (2) G-P(sol) polarization free energy of solvation -28.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds