Wall clock time and date at job start Mon Mar 30 2020 02:22:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.46939 * 2 1 4 4 C 1.53002 * 109.46626 * 180.02562 * 3 2 1 5 5 H 1.08997 * 109.53863 * 305.09713 * 4 3 2 6 6 C 1.53038 * 109.50515 * 65.19838 * 4 3 2 7 7 N 1.46830 * 109.51757 * 179.11465 * 6 4 3 8 8 C 1.46847 * 111.21086 * 298.25173 * 7 6 4 9 9 C 1.53044 * 109.51335 * 61.74856 * 8 7 6 10 10 C 1.53117 * 109.27792 * 300.82256 * 9 8 7 11 11 H 1.08998 * 109.52156 * 297.68928 * 10 9 8 12 12 C 1.50693 * 109.52032 * 177.55923 * 10 9 8 13 13 H 1.08002 * 120.00206 * 239.99766 * 12 10 9 14 14 C 1.37878 * 119.99786 * 60.00621 * 12 10 9 15 15 N 1.31509 * 120.00327 * 359.97438 * 14 12 10 16 16 Si 1.86803 * 119.99772 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.47158 * 359.97438 * 16 14 12 18 18 H 1.48502 * 109.47417 * 119.99692 * 16 14 12 19 19 H 1.48503 * 109.47093 * 239.99610 * 16 14 12 20 20 H 1.09001 * 109.46963 * 299.99825 * 1 2 3 21 21 H 1.08997 * 109.47248 * 59.99536 * 1 2 3 22 22 H 1.09001 * 109.46991 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46963 * 240.00175 * 2 1 3 24 24 H 1.08997 * 109.47248 * 120.00464 * 2 1 3 25 25 H 1.08997 * 109.47505 * 60.00594 * 3 2 1 26 26 H 1.08997 * 109.47070 * 300.00023 * 3 2 1 27 27 H 1.08995 * 109.46433 * 299.13417 * 6 4 3 28 28 H 1.09004 * 109.46142 * 59.11359 * 6 4 3 29 29 H 1.00904 * 110.98205 * 174.15538 * 7 6 4 30 30 H 1.09002 * 109.46448 * 301.73578 * 8 7 6 31 31 H 1.08994 * 109.45958 * 181.75943 * 8 7 6 32 32 H 1.09001 * 109.49858 * 60.76701 * 9 8 7 33 33 H 1.09000 * 109.49965 * 180.88251 * 9 8 7 34 34 H 0.97004 * 120.00356 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 1 3.9349 0.8517 0.8396 6 6 4.0804 0.8375 -1.3104 7 7 5.5485 0.8567 -1.3204 8 6 6.0624 2.2304 -1.2484 9 6 5.6112 2.8769 0.0634 10 6 4.0813 2.8803 0.1252 11 1 3.6850 3.4817 -0.6929 12 6 3.6318 3.4613 1.4410 13 1 3.0361 2.8672 2.1183 14 6 3.9810 4.7513 1.7802 15 7 4.7066 5.4745 0.9557 16 14 3.4232 5.4717 3.4110 17 1 2.6242 4.4619 4.1508 18 1 4.6114 5.8506 4.2171 19 1 2.5901 6.6754 3.1613 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 1.8934 -0.5139 0.8899 25 1 1.6768 1.9563 0.8900 26 1 1.6766 1.9563 -0.8900 27 1 3.7300 -0.1910 -1.3963 28 1 3.7040 1.4208 -2.1509 29 1 5.9107 0.3771 -2.1309 30 1 5.6766 2.8070 -2.0891 31 1 7.1515 2.2133 -1.2891 32 1 6.0082 2.3086 0.9045 33 1 5.9796 3.9017 0.1095 34 1 4.9526 6.3820 1.1945 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260157430.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:12 Heat of formation + Delta-G solvation = -48.896053 kcal Electronic energy + Delta-G solvation = -13213.713921 eV Core-core repulsion = 11144.244233 eV Total energy + Delta-G solvation = -2069.469688 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.79574 -35.85798 -35.14437 -32.33766 -31.35222 -27.66901 -26.53415 -23.86300 -22.94942 -21.33870 -20.26186 -18.46979 -17.21853 -16.45330 -16.09513 -15.11742 -14.88130 -14.52661 -14.50528 -14.35555 -13.67604 -13.24542 -12.89369 -12.80346 -12.70029 -12.45249 -12.10818 -12.00254 -11.85667 -11.67074 -11.35429 -11.25704 -10.62323 -10.42721 -10.33233 -9.28893 -8.05627 -6.17201 1.38607 1.40900 1.51772 2.44291 3.20849 3.45399 4.09424 4.13338 4.29817 4.41018 4.46908 4.48985 4.61509 4.76832 4.89688 4.93161 5.00250 5.02039 5.13226 5.14802 5.29967 5.34832 5.45197 5.51548 5.60806 5.65630 5.71046 6.00795 6.07435 6.30021 6.44441 6.71563 6.94260 7.49494 8.99093 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.026215 B = 0.013883 C = 0.009539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.838825 B = 2016.317283 C = 2934.490202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 C -0.100 4.100 4 C -0.071 4.071 5 H 0.049 0.951 6 C 0.070 3.930 7 N -0.691 5.691 8 C 0.066 3.934 9 C -0.103 4.103 10 C 0.051 3.949 11 H -0.015 1.015 12 C -0.518 4.518 13 H 0.052 0.948 14 C 0.009 3.991 15 N -0.920 5.920 16 Si 0.948 3.052 17 H -0.268 1.268 18 H -0.282 1.282 19 H -0.282 1.282 20 H 0.045 0.955 21 H 0.053 0.947 22 H 0.068 0.932 23 H 0.070 0.930 24 H 0.056 0.944 25 H 0.047 0.953 26 H 0.044 0.956 27 H 0.090 0.910 28 H 0.016 0.984 29 H 0.348 0.652 30 H 0.013 0.987 31 H 0.074 0.926 32 H 0.027 0.973 33 H 0.060 0.940 34 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.161 -9.189 -3.950 10.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.156 4.156 3 C -0.138 4.138 4 C -0.090 4.090 5 H 0.067 0.933 6 C -0.059 4.059 7 N -0.322 5.322 8 C -0.063 4.063 9 C -0.141 4.141 10 C 0.033 3.967 11 H 0.003 0.997 12 C -0.556 4.556 13 H 0.070 0.930 14 C -0.188 4.188 15 N -0.560 5.560 16 Si 0.775 3.225 17 H -0.192 1.192 18 H -0.208 1.208 19 H -0.208 1.208 20 H 0.065 0.935 21 H 0.072 0.928 22 H 0.087 0.913 23 H 0.089 0.911 24 H 0.075 0.925 25 H 0.066 0.934 26 H 0.063 0.937 27 H 0.108 0.892 28 H 0.034 0.966 29 H 0.166 0.834 30 H 0.031 0.969 31 H 0.093 0.907 32 H 0.045 0.955 33 H 0.079 0.921 34 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -3.034 -9.126 -3.291 10.164 hybrid contribution -0.246 1.338 0.002 1.360 sum -3.280 -7.788 -3.288 9.068 Atomic orbital electron populations 1.21756 0.95242 1.02016 1.01531 1.21559 0.96297 0.95772 1.01981 1.21469 0.94617 0.96945 1.00800 1.21119 0.94933 0.96563 0.96363 0.93287 1.21995 0.87363 1.00436 0.96129 1.60248 1.08543 1.16436 1.47009 1.21900 0.98977 0.88476 0.96938 1.21487 0.98708 0.99355 0.94555 1.18669 0.92156 0.91424 0.94472 0.99704 1.21570 1.31872 0.98160 1.04020 0.92999 1.25720 0.95468 0.97704 0.99937 1.70023 1.38849 1.09671 1.37491 0.85650 0.78047 0.78318 0.80524 1.19184 1.20800 1.20814 0.93537 0.92774 0.91317 0.91098 0.92496 0.93384 0.93687 0.89205 0.96566 0.83394 0.96919 0.90734 0.95453 0.92114 0.93273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.61 9.91 71.98 0.71 -2.90 16 2 C -0.12 -3.39 5.69 30.59 0.17 -3.21 16 3 C -0.10 -3.75 4.55 30.59 0.14 -3.61 16 4 C -0.07 -2.96 1.81 -10.74 -0.02 -2.98 16 5 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 6 C 0.07 2.43 5.57 86.33 0.48 2.91 16 7 N -0.69 -23.79 6.84 -514.04 -3.52 -27.31 16 8 C 0.07 2.63 6.55 86.33 0.57 3.19 16 9 C -0.10 -5.08 5.12 30.65 0.16 -4.93 16 10 C 0.05 2.63 1.68 -11.46 -0.02 2.61 16 11 H -0.02 -0.87 8.14 -2.39 -0.02 -0.89 16 12 C -0.52 -29.02 7.79 25.60 0.20 -28.82 16 13 H 0.05 2.88 6.90 -2.91 -0.02 2.86 16 14 C 0.01 0.53 5.30 84.66 0.45 0.98 16 15 N -0.92 -54.24 11.35 21.45 0.24 -54.00 16 16 Si 0.95 44.64 29.54 68.60 2.03 46.67 16 17 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 18 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 19 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 20 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 21 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 22 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 23 H 0.07 1.80 6.59 -2.39 -0.02 1.78 16 24 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 25 H 0.05 2.02 6.65 -2.39 -0.02 2.00 16 26 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 27 H 0.09 2.59 6.61 -2.39 -0.02 2.58 16 28 H 0.02 0.58 8.14 -2.38 -0.02 0.56 16 29 H 0.35 9.46 8.90 -89.69 -0.80 8.66 16 30 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 32 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.06 3.37 6.15 -2.39 -0.01 3.36 16 34 H 0.26 14.49 8.31 -92.71 -0.77 13.71 16 Total: -1.00 -61.15 262.69 1.85 -59.30 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: 0.26 Total: 12.09 kcal Atomic # 6 Polarization: -39.60 SS G_CDS: 2.84 Total: -36.76 kcal Atomic # 7 Polarization: -78.03 SS G_CDS: -3.27 Total: -81.31 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -61.15 1.85 -59.30 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260157430.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.407 kcal (2) G-P(sol) polarization free energy of solvation -61.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds