Wall clock time and date at job start Mon Mar 30 2020 02:11:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47273 * 2 1 4 4 C 1.53005 * 109.47154 * 120.00025 * 2 1 3 5 5 C 1.53000 * 109.47359 * 65.87137 * 4 2 1 6 6 H 1.08998 * 110.28945 * 306.06411 * 5 4 2 7 7 C 1.54382 * 110.32040 * 68.29475 * 5 4 2 8 8 N 1.48568 * 104.59192 * 142.74906 * 7 5 4 9 9 C 1.48561 * 104.22064 * 320.51711 * 8 7 5 10 10 C 1.54253 * 110.32751 * 183.93285 * 5 4 2 11 11 H 1.09003 * 110.32538 * 122.10265 * 10 5 4 12 12 C 1.50703 * 110.32323 * 0.02562 * 10 5 4 13 13 H 1.08001 * 119.99870 * 359.97438 * 12 10 5 14 14 C 1.37873 * 120.00206 * 180.02562 * 12 10 5 15 15 N 1.31518 * 119.99883 * 359.97438 * 14 12 10 16 16 Si 1.86798 * 120.00130 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.47504 * 90.00009 * 16 14 12 18 18 H 1.48505 * 109.47235 * 209.99909 * 16 14 12 19 19 H 1.48502 * 109.47136 * 329.99507 * 16 14 12 20 20 H 1.08996 * 109.47063 * 60.00000 * 1 2 3 21 21 H 1.09003 * 109.47498 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.47120 * 300.00000 * 1 2 3 23 23 H 1.09001 * 109.47290 * 239.99233 * 2 1 3 24 24 H 1.08995 * 109.47167 * 55.04008 * 3 2 1 25 25 H 1.08999 * 109.46882 * 175.03918 * 3 2 1 26 26 H 1.09000 * 109.47036 * 295.03865 * 3 2 1 27 27 H 1.08995 * 109.47335 * 185.87490 * 4 2 1 28 28 H 1.09004 * 109.47135 * 305.87532 * 4 2 1 29 29 H 1.09000 * 110.41273 * 261.52800 * 7 5 4 30 30 H 1.09002 * 110.40770 * 23.97680 * 7 5 4 31 31 H 1.00898 * 110.99569 * 80.07554 * 8 7 5 32 32 H 1.08996 * 110.41167 * 280.70266 * 9 8 7 33 33 H 1.09005 * 110.40683 * 158.25736 * 9 8 7 34 34 H 0.97001 * 119.99874 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6541 -2.2001 1.1777 6 1 0.5812 -2.3033 1.0155 7 6 2.4391 -2.9051 0.0508 8 7 2.7411 -4.2550 0.5929 9 6 3.0752 -4.0090 2.0194 10 6 2.0725 -2.9263 2.4727 11 1 1.2049 -3.3859 2.9462 12 6 2.7360 -1.9625 3.4223 13 1 2.8561 -0.9260 3.1434 14 6 3.1907 -2.4039 4.6468 15 7 3.0449 -3.6662 4.9862 16 14 4.0125 -1.2091 5.8241 17 1 2.9857 -0.5967 6.7050 18 1 5.0064 -1.9364 6.6540 19 1 4.6990 -0.1442 5.0496 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.8933 -0.5140 -0.8899 24 1 1.6060 1.9813 0.8422 25 1 3.1264 1.4437 0.0889 26 1 1.7511 1.9300 -0.9311 27 1 3.1248 -0.6311 1.3035 28 1 1.5933 -0.2718 2.1362 29 1 1.8265 -2.9844 -0.8472 30 1 3.3622 -2.3665 -0.1638 31 1 1.9421 -4.8654 0.5087 32 1 4.0977 -3.6432 2.1127 33 1 2.9414 -4.9195 2.6036 34 1 3.3644 -3.9767 5.8479 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260272889.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:43 Heat of formation + Delta-G solvation = -38.417755 kcal Electronic energy + Delta-G solvation = -13269.244352 eV Core-core repulsion = 11200.229037 eV Total energy + Delta-G solvation = -2069.015315 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.02965 -36.63874 -34.66845 -31.67373 -29.81397 -27.93588 -26.19040 -25.90247 -22.77383 -20.94358 -20.41338 -17.83067 -17.29786 -16.42965 -16.02246 -15.20211 -14.94040 -14.56661 -14.36920 -13.86444 -13.59073 -13.26122 -12.98087 -12.83155 -12.53894 -12.42835 -12.34513 -12.06849 -11.68289 -11.47112 -11.29083 -11.16365 -10.78580 -10.58634 -10.46012 -9.42708 -8.11133 -6.16855 1.39592 1.41215 1.50353 2.43851 3.21629 3.63640 4.00587 4.10945 4.19380 4.40775 4.45813 4.53561 4.79750 4.83799 4.89204 4.92528 5.02531 5.06224 5.11323 5.20896 5.25760 5.31138 5.40167 5.46142 5.58243 5.63332 5.73329 5.78700 5.89542 5.97883 6.43022 6.64929 6.94055 7.50159 8.99291 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.029469 B = 0.013309 C = 0.010039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.926790 B = 2103.323258 C = 2788.352847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.099 4.099 3 C -0.143 4.143 4 C -0.077 4.077 5 C -0.110 4.110 6 H 0.061 0.939 7 C 0.055 3.945 8 N -0.683 5.683 9 C 0.078 3.922 10 C 0.013 3.987 11 H -0.010 1.010 12 C -0.523 4.523 13 H 0.077 0.923 14 C 0.008 3.992 15 N -0.926 5.926 16 Si 0.947 3.053 17 H -0.278 1.278 18 H -0.288 1.288 19 H -0.265 1.265 20 H 0.067 0.933 21 H 0.050 0.950 22 H 0.044 0.956 23 H 0.073 0.927 24 H 0.048 0.952 25 H 0.048 0.952 26 H 0.068 0.932 27 H 0.044 0.956 28 H 0.045 0.955 29 H 0.085 0.915 30 H 0.066 0.934 31 H 0.332 0.668 32 H 0.040 0.960 33 H 0.037 0.963 34 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.214 6.407 -9.502 11.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.117 4.117 3 C -0.200 4.200 4 C -0.115 4.115 5 C -0.130 4.130 6 H 0.079 0.921 7 C -0.075 4.075 8 N -0.309 5.309 9 C -0.051 4.051 10 C -0.007 4.007 11 H 0.009 0.991 12 C -0.561 4.561 13 H 0.095 0.905 14 C -0.190 4.190 15 N -0.566 5.566 16 Si 0.774 3.226 17 H -0.204 1.204 18 H -0.214 1.214 19 H -0.190 1.190 20 H 0.086 0.914 21 H 0.069 0.931 22 H 0.064 0.936 23 H 0.091 0.909 24 H 0.067 0.933 25 H 0.067 0.933 26 H 0.087 0.913 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.104 0.896 30 H 0.084 0.916 31 H 0.147 0.853 32 H 0.059 0.941 33 H 0.056 0.944 34 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -2.461 6.191 -9.645 11.722 hybrid contribution -0.396 0.344 1.746 1.823 sum -2.857 6.535 -7.899 10.643 Atomic orbital electron populations 1.21827 0.95036 1.01497 1.01558 1.21224 0.96188 0.96321 0.98007 1.21808 1.00662 0.95718 1.01849 1.21484 0.99397 0.93919 0.96702 1.22446 0.98645 0.96367 0.95575 0.92098 1.23011 0.98815 0.89051 0.96631 1.63421 1.40220 1.11637 1.15595 1.22642 0.98634 0.97680 0.86168 1.19966 0.93763 0.93984 0.92944 0.99134 1.21890 1.37054 0.96644 1.00508 0.90497 1.25799 0.96931 0.96441 0.99873 1.70101 1.48329 1.15975 1.22171 0.85707 0.78375 0.79366 0.79171 1.20413 1.21417 1.18981 0.91447 0.93110 0.93640 0.90854 0.93326 0.93272 0.91336 0.93689 0.93621 0.89634 0.91580 0.85329 0.94099 0.94408 0.93384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.56 8.98 71.98 0.65 -2.92 16 2 C -0.10 -2.73 2.85 -10.79 -0.03 -2.76 16 3 C -0.14 -3.50 9.19 71.98 0.66 -2.84 16 4 C -0.08 -2.82 2.53 30.60 0.08 -2.74 16 5 C -0.11 -4.32 2.94 -9.90 -0.03 -4.35 16 6 H 0.06 2.26 6.40 -2.39 -0.02 2.24 16 7 C 0.05 1.91 6.14 86.45 0.53 2.45 16 8 N -0.68 -26.96 7.62 -500.83 -3.82 -30.78 16 9 C 0.08 3.83 6.18 86.45 0.53 4.36 16 10 C 0.01 0.67 2.94 -10.65 -0.03 0.64 16 11 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 12 C -0.52 -28.25 7.54 25.60 0.19 -28.05 16 13 H 0.08 4.00 4.74 -2.91 -0.01 3.98 16 14 C 0.01 0.42 5.34 84.65 0.45 0.87 16 15 N -0.93 -54.58 12.56 21.45 0.27 -54.31 16 16 Si 0.95 44.05 29.54 68.60 2.03 46.08 16 17 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 18 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 19 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 20 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 21 H 0.05 1.31 6.49 -2.39 -0.02 1.30 16 22 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 23 H 0.07 1.90 7.38 -2.39 -0.02 1.88 16 24 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 25 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 26 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.04 1.79 7.27 -2.39 -0.02 1.77 16 28 H 0.05 1.85 6.87 -2.38 -0.02 1.83 16 29 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 30 H 0.07 2.38 7.77 -2.39 -0.02 2.36 16 31 H 0.33 11.87 8.92 -89.70 -0.80 11.07 16 32 H 0.04 2.17 7.85 -2.39 -0.02 2.15 16 33 H 0.04 1.98 8.04 -2.38 -0.02 1.96 16 34 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 Total: -1.00 -59.35 262.70 1.74 -57.61 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: 0.26 Total: 16.73 kcal Atomic # 6 Polarization: -38.34 SS G_CDS: 3.00 Total: -35.33 kcal Atomic # 7 Polarization: -81.54 SS G_CDS: -3.55 Total: -85.09 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Total: -59.35 1.74 -57.61 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260272889.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.193 kcal (2) G-P(sol) polarization free energy of solvation -59.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds