Wall clock time and date at job start Mon Mar 30 2020 02:10:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47204 * 2 1 4 4 C 1.53002 * 109.47629 * 239.99905 * 2 1 3 5 5 C 1.53000 * 109.47255 * 119.99700 * 2 1 3 6 6 H 1.09002 * 110.27543 * 180.70217 * 5 2 1 7 7 C 1.54598 * 110.30839 * 302.79582 * 5 2 1 8 8 C 1.55187 * 102.80460 * 140.94849 * 7 5 2 9 9 N 1.48538 * 103.23871 * 322.56539 * 8 7 5 10 10 C 1.47898 * 105.81927 * 39.22816 * 9 8 7 11 11 H 1.08997 * 109.91960 * 215.32165 * 10 9 8 12 12 C 1.50705 * 110.08195 * 94.11539 * 10 9 8 13 13 H 1.08000 * 120.00135 * 242.30890 * 12 10 9 14 14 C 1.37878 * 119.99718 * 62.31354 * 12 10 9 15 15 N 1.31518 * 120.00051 * 359.97438 * 14 12 10 16 16 Si 1.86794 * 120.00122 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.46847 * 89.99640 * 16 14 12 18 18 H 1.48499 * 109.47374 * 209.99903 * 16 14 12 19 19 H 1.48506 * 109.47251 * 330.00181 * 16 14 12 20 20 H 1.08993 * 109.46935 * 300.00323 * 1 2 3 21 21 H 1.09006 * 109.46481 * 60.00153 * 1 2 3 22 22 H 1.08994 * 109.46781 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47311 * 179.97438 * 3 2 1 24 24 H 1.09000 * 109.46923 * 299.99975 * 3 2 1 25 25 H 1.08996 * 109.47196 * 59.99522 * 3 2 1 26 26 H 1.09002 * 109.46649 * 300.00116 * 4 2 1 27 27 H 1.09000 * 109.46911 * 59.99772 * 4 2 1 28 28 H 1.08997 * 109.47411 * 180.02562 * 4 2 1 29 29 H 1.09006 * 110.72009 * 259.32673 * 7 5 2 30 30 H 1.08996 * 110.72328 * 22.60549 * 7 5 2 31 31 H 1.08998 * 110.64686 * 204.13698 * 8 7 5 32 32 H 1.09004 * 110.82491 * 81.07526 * 8 7 5 33 33 H 1.00895 * 110.99994 * 159.74789 * 9 8 7 34 34 H 0.96995 * 119.99989 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 2.0400 -0.7212 1.2493 6 1 3.1299 -0.7180 1.2688 7 6 1.4785 -0.0495 2.5234 8 6 1.1737 -1.2604 3.4448 9 7 0.6711 -2.2895 2.4989 10 6 1.5090 -2.1662 1.2864 11 1 0.9087 -2.3641 0.3985 12 6 2.6614 -3.1351 1.3532 13 1 3.6765 -2.7666 1.3680 14 6 2.4198 -4.4919 1.3951 15 7 1.1837 -4.9405 1.3775 16 14 3.8482 -5.6928 1.4771 17 1 4.1885 -5.9609 2.8975 18 1 3.4652 -6.9638 0.8114 19 1 5.0265 -5.1084 0.7876 20 1 -0.3633 0.5139 0.8899 21 1 -0.3632 0.5139 -0.8901 22 1 -0.3633 -1.0276 -0.0005 23 1 3.1300 1.4425 0.0005 24 1 1.6767 1.9563 -0.8900 25 1 1.6767 1.9564 0.8899 26 1 1.6768 -1.7489 -1.2492 27 1 1.6768 -0.2075 -2.1392 28 1 3.1301 -0.7216 -1.2489 29 1 2.2250 0.6032 2.9763 30 1 0.5668 0.5038 2.2980 31 1 0.4076 -1.0035 4.1764 32 1 2.0795 -1.6058 3.9433 33 1 0.7450 -3.2136 2.8972 34 1 1.0137 -5.8950 1.4066 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260431876.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:35 Heat of formation + Delta-G solvation = -20.147672 kcal Electronic energy + Delta-G solvation = -13601.031441 eV Core-core repulsion = 11532.808376 eV Total energy + Delta-G solvation = -2068.223064 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -38.68578 -34.72742 -32.36925 -28.61601 -27.80263 -26.68614 -26.33634 -24.23117 -20.43438 -20.04585 -17.33264 -16.53220 -15.11606 -14.83509 -14.24166 -13.46812 -13.37072 -12.90817 -12.14295 -11.96310 -11.81864 -11.44603 -11.15972 -11.09274 -10.90391 -10.74601 -10.63775 -10.49898 -10.28624 -10.16446 -9.83894 -9.49477 -9.34544 -8.91751 -8.46547 -6.92397 -5.98294 -4.12515 3.26840 3.34692 3.37838 4.40139 5.22111 5.42938 5.46996 5.53057 5.79456 5.94950 6.02485 6.11667 6.23142 6.29776 6.30869 6.39986 6.42622 6.52544 6.59488 6.68054 6.79157 6.83304 6.95354 6.99559 7.07321 7.19156 7.25420 7.80729 7.98740 8.23470 8.49518 8.97209 9.15925 9.55373 11.01336 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.039691 B = 0.012776 C = 0.011438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.277977 B = 2191.134222 C = 2447.457265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.058 4.058 3 C -0.138 4.138 4 C -0.136 4.136 5 C -0.081 4.081 6 H 0.060 0.940 7 C -0.120 4.120 8 C 0.039 3.961 9 N -0.668 5.668 10 C 0.203 3.797 11 H 0.052 0.948 12 C -0.544 4.544 13 H 0.052 0.948 14 C 0.066 3.934 15 N -0.882 5.882 16 Si 0.886 3.114 17 H -0.282 1.282 18 H -0.286 1.286 19 H -0.275 1.275 20 H 0.052 0.948 21 H 0.036 0.964 22 H 0.068 0.932 23 H 0.047 0.953 24 H 0.044 0.956 25 H 0.049 0.951 26 H 0.068 0.932 27 H 0.038 0.962 28 H 0.047 0.953 29 H 0.046 0.954 30 H 0.066 0.934 31 H 0.051 0.949 32 H 0.024 0.976 33 H 0.348 0.652 34 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.403 8.175 -0.899 8.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.058 4.058 3 C -0.195 4.195 4 C -0.193 4.193 5 C -0.100 4.100 6 H 0.078 0.922 7 C -0.158 4.158 8 C -0.091 4.091 9 N -0.300 5.300 10 C 0.096 3.904 11 H 0.069 0.931 12 C -0.583 4.583 13 H 0.070 0.930 14 C -0.137 4.137 15 N -0.521 5.521 16 Si 0.714 3.286 17 H -0.208 1.208 18 H -0.212 1.212 19 H -0.200 1.200 20 H 0.071 0.929 21 H 0.055 0.945 22 H 0.087 0.913 23 H 0.066 0.934 24 H 0.063 0.937 25 H 0.069 0.931 26 H 0.087 0.913 27 H 0.057 0.943 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.085 0.915 31 H 0.069 0.931 32 H 0.042 0.958 33 H 0.166 0.834 34 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.302 8.365 -1.156 8.450 hybrid contribution 1.801 -1.186 0.398 2.193 sum 1.499 7.179 -0.758 7.373 Atomic orbital electron populations 1.21917 0.94988 1.02783 0.99784 1.20462 0.95455 0.93962 0.95891 1.21884 1.00390 0.96653 1.00584 1.21835 1.00470 1.01339 0.95702 1.22158 0.98902 0.96998 0.91935 0.92160 1.22640 0.99645 0.96994 0.96529 1.22849 0.96787 0.94008 0.95449 1.63427 1.52495 1.08356 1.05682 1.19841 0.90818 0.88569 0.91166 0.93067 1.21871 0.93442 0.91464 1.51549 0.92977 1.25051 0.95473 0.98383 0.94757 1.69928 1.18189 1.14106 1.49837 0.86696 0.83029 0.80795 0.78080 1.20800 1.21163 1.19984 0.92917 0.94457 0.91274 0.93379 0.93690 0.93145 0.91262 0.94308 0.93369 0.93515 0.91516 0.93081 0.95765 0.83377 0.92798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 7.92 37.16 0.29 -2.12 16 2 C -0.06 -1.03 0.54 -154.51 -0.08 -1.11 16 3 C -0.14 -2.08 8.28 37.16 0.31 -1.77 16 4 C -0.14 -2.46 8.24 37.16 0.31 -2.16 16 5 C -0.08 -1.67 1.99 -89.26 -0.18 -1.85 16 6 H 0.06 1.32 7.38 -51.93 -0.38 0.94 16 7 C -0.12 -2.27 5.42 -24.73 -0.13 -2.41 16 8 C 0.04 0.82 7.54 -1.76 -0.01 0.81 16 9 N -0.67 -16.22 7.33 -104.19 -0.76 -16.98 16 10 C 0.20 5.00 1.83 -67.79 -0.12 4.88 16 11 H 0.05 1.39 5.02 -51.93 -0.26 1.13 16 12 C -0.54 -14.70 8.62 -34.44 -0.30 -15.00 16 13 H 0.05 1.42 7.33 -52.49 -0.38 1.04 16 14 C 0.07 1.81 5.12 -17.82 -0.09 1.72 16 15 N -0.88 -24.88 12.07 55.43 0.67 -24.21 16 16 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 17 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 18 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 19 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 20 H 0.05 0.90 5.99 -51.93 -0.31 0.59 16 21 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 22 H 0.07 1.39 6.45 -51.93 -0.33 1.05 16 23 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 24 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.05 0.73 7.25 -51.93 -0.38 0.35 16 26 H 0.07 1.43 6.55 -51.93 -0.34 1.09 16 27 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 29 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.07 1.20 5.52 -51.93 -0.29 0.91 16 31 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.35 9.23 6.89 -39.29 -0.27 8.96 16 34 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 257.56 15.07 3.88 3.88 Total: -1.00 -27.27 257.56 -6.71 -33.98 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -5.46 Total: 6.23 kcal Atomic # 6 Polarization: -19.00 SS G_CDS: -0.01 Total: -19.02 kcal Atomic # 7 Polarization: -41.10 SS G_CDS: -0.09 Total: -41.20 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -27.27 -6.71 -33.98 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260431876.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.834 kcal (2) G-P(sol) polarization free energy of solvation -27.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds