Wall clock time and date at job start Mon Mar 30 2020 02:10:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47049 * 2 1 4 4 C 1.53000 * 109.46946 * 119.99758 * 2 1 3 5 5 C 1.53001 * 109.47202 * 239.99598 * 2 1 3 6 6 H 1.08999 * 110.27642 * 298.57538 * 5 2 1 7 7 C 1.54595 * 110.30821 * 176.48420 * 5 2 1 8 8 C 1.55094 * 102.84588 * 219.18381 * 7 5 2 9 9 N 1.48534 * 103.28332 * 37.31105 * 8 7 5 10 10 C 1.47897 * 105.82068 * 320.84169 * 9 8 7 11 11 H 1.09003 * 109.91896 * 265.98549 * 10 9 8 12 12 C 1.50695 * 109.91946 * 144.68320 * 10 9 8 13 13 H 1.07997 * 120.00383 * 245.06895 * 12 10 9 14 14 C 1.37876 * 119.99904 * 65.07376 * 12 10 9 15 15 N 1.31514 * 120.00317 * 180.02562 * 14 12 10 16 16 Si 1.86800 * 119.99938 * 359.97438 * 14 12 10 17 17 H 1.48505 * 109.46652 * 90.00581 * 16 14 12 18 18 H 1.48496 * 109.47364 * 210.00408 * 16 14 12 19 19 H 1.48499 * 109.47195 * 330.00966 * 16 14 12 20 20 H 1.09008 * 109.47044 * 89.08432 * 1 2 3 21 21 H 1.09001 * 109.47313 * 209.07955 * 1 2 3 22 22 H 1.08997 * 109.47199 * 329.08257 * 1 2 3 23 23 H 1.08995 * 109.46962 * 31.42322 * 3 2 1 24 24 H 1.08993 * 109.47017 * 151.43080 * 3 2 1 25 25 H 1.09007 * 109.46405 * 271.42363 * 3 2 1 26 26 H 1.09002 * 109.47158 * 59.99698 * 4 2 1 27 27 H 1.08999 * 109.47431 * 180.02562 * 4 2 1 28 28 H 1.09001 * 109.47382 * 300.00256 * 4 2 1 29 29 H 1.09007 * 110.72476 * 337.49068 * 7 5 2 30 30 H 1.09004 * 110.72455 * 100.76896 * 7 5 2 31 31 H 1.08993 * 110.60254 * 278.87498 * 8 7 5 32 32 H 1.09009 * 110.82464 * 155.84614 * 8 7 5 33 33 H 1.00903 * 111.00580 * 81.35850 * 9 8 7 34 34 H 0.96996 * 120.00497 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 2.0400 -0.7213 -1.2492 6 1 1.7049 -1.7585 -1.2498 7 6 3.5832 -0.6561 -1.3140 8 6 3.8558 -0.4330 -2.8244 9 7 2.7532 0.4711 -3.2403 10 6 1.5511 -0.0009 -2.5194 11 1 0.9902 -0.6939 -3.1466 12 6 0.6846 1.1729 -2.1425 13 1 0.5299 1.4179 -1.1021 14 6 0.0891 1.9341 -3.1259 15 7 -0.6668 2.9588 -2.7970 16 14 0.3571 1.5107 -4.9254 17 1 -0.6932 0.5605 -5.3720 18 1 0.2837 2.7491 -5.7416 19 1 1.6937 0.8857 -5.0931 20 1 -0.3633 0.0164 -1.0276 21 1 -0.3634 -0.8981 0.4995 22 1 -0.3633 0.8816 0.5280 23 1 1.3343 2.0773 0.5358 24 1 3.0119 1.4842 0.4914 25 1 2.1370 1.7935 -1.0275 26 1 1.6766 -1.7489 1.2494 27 1 3.1299 -0.7209 1.2496 28 1 1.6766 -0.2074 2.1393 29 1 3.9589 0.1818 -0.7265 30 1 4.0235 -1.5940 -0.9754 31 1 3.8047 -1.3770 -3.3668 32 1 4.8235 0.0450 -2.9771 33 1 2.9630 1.4295 -3.0048 34 1 -1.0854 3.4946 -3.4888 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260431883.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:38 Heat of formation + Delta-G solvation = 31.609017 kcal Electronic energy + Delta-G solvation = -13965.990025 eV Core-core repulsion = 11900.011299 eV Total energy + Delta-G solvation = -2065.978726 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.44442 -34.72552 -32.54833 -29.39853 -27.81570 -26.59635 -26.14491 -23.99483 -20.65909 -20.03956 -17.34333 -17.10697 -15.07520 -14.53998 -13.81456 -13.71091 -13.26689 -13.08876 -12.81395 -11.86136 -11.77680 -11.61924 -11.05689 -10.97298 -10.70090 -10.64746 -10.54881 -10.34184 -10.20162 -9.68389 -9.50723 -9.39775 -9.17265 -8.50544 -8.28346 -7.19323 -5.97065 -3.99291 3.48277 3.58419 3.89064 4.66470 5.15085 5.44723 5.48929 5.52568 5.78928 5.86261 5.92555 6.04134 6.25383 6.29092 6.35642 6.45589 6.46905 6.50188 6.56307 6.73641 6.79357 6.93151 7.03165 7.05217 7.18250 7.35437 7.46574 7.63461 7.79056 8.10022 8.36077 8.77347 9.10796 9.62751 11.07606 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.035940 B = 0.017754 C = 0.013507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.880081 B = 1576.755053 C = 2072.575578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.040 4.040 3 C -0.150 4.150 4 C -0.140 4.140 5 C -0.089 4.089 6 H 0.051 0.949 7 C -0.152 4.152 8 C 0.036 3.964 9 N -0.675 5.675 10 C 0.168 3.832 11 H 0.038 0.962 12 C -0.554 4.554 13 H 0.129 0.871 14 C 0.079 3.921 15 N -0.896 5.896 16 Si 0.843 3.157 17 H -0.292 1.292 18 H -0.302 1.302 19 H -0.202 1.202 20 H 0.113 0.887 21 H 0.017 0.983 22 H 0.042 0.958 23 H 0.042 0.958 24 H 0.017 0.983 25 H 0.110 0.890 26 H 0.043 0.957 27 H 0.044 0.956 28 H 0.044 0.956 29 H 0.066 0.934 30 H 0.050 0.950 31 H 0.061 0.939 32 H 0.054 0.946 33 H 0.334 0.666 34 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.329 -5.668 3.495 9.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.040 4.040 3 C -0.206 4.206 4 C -0.197 4.197 5 C -0.110 4.110 6 H 0.070 0.930 7 C -0.191 4.191 8 C -0.095 4.095 9 N -0.305 5.305 10 C 0.061 3.939 11 H 0.056 0.944 12 C -0.591 4.591 13 H 0.146 0.854 14 C -0.125 4.125 15 N -0.533 5.533 16 Si 0.670 3.330 17 H -0.218 1.218 18 H -0.229 1.229 19 H -0.123 1.123 20 H 0.131 0.869 21 H 0.036 0.964 22 H 0.061 0.939 23 H 0.061 0.939 24 H 0.036 0.964 25 H 0.128 0.872 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.084 0.916 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.152 0.848 34 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.089 -5.832 2.757 8.871 hybrid contribution 0.094 0.110 0.079 0.165 sum 6.183 -5.722 2.837 8.889 Atomic orbital electron populations 1.22641 0.94300 0.98099 1.05840 1.20240 0.96022 0.95288 0.92498 1.22639 0.97247 0.95266 1.05447 1.22006 0.99945 0.99475 0.98265 1.22314 0.93355 0.98232 0.97050 0.93021 1.23229 0.97078 1.00530 0.98244 1.23054 0.95263 0.98025 0.93121 1.63613 1.03085 1.05737 1.58017 1.20256 0.89375 0.95766 0.88532 0.94426 1.22475 1.27929 1.10860 0.97823 0.85375 1.25088 0.93820 0.94398 0.99165 1.69916 1.31601 1.17998 1.33791 0.87417 0.82637 0.77780 0.85169 1.21848 1.22922 1.12311 0.86886 0.96437 0.93886 0.93925 0.96410 0.87187 0.93829 0.93678 0.93731 0.91566 0.93126 0.92041 0.92734 0.84843 0.92861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.12 7.62 37.16 0.28 -2.83 16 2 C -0.04 -0.76 0.54 -154.51 -0.08 -0.85 16 3 C -0.15 -2.99 6.48 37.16 0.24 -2.75 16 4 C -0.14 -2.27 7.97 37.16 0.30 -1.97 16 5 C -0.09 -1.72 2.35 -89.26 -0.21 -1.93 16 6 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 7 C -0.15 -2.57 5.43 -24.79 -0.13 -2.70 16 8 C 0.04 0.62 7.55 -1.81 -0.01 0.60 16 9 N -0.67 -14.06 4.60 -104.25 -0.48 -14.54 16 10 C 0.17 3.72 2.12 -67.80 -0.14 3.58 16 11 H 0.04 0.90 7.39 -51.93 -0.38 0.51 16 12 C -0.55 -13.80 4.11 -34.44 -0.14 -13.94 16 13 H 0.13 3.24 2.41 -52.49 -0.13 3.12 16 14 C 0.08 2.14 5.47 -17.82 -0.10 2.05 16 15 N -0.90 -26.08 13.96 55.43 0.77 -25.31 16 16 Si 0.84 20.74 26.94 -169.99 -4.58 16.16 16 17 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 18 H -0.30 -7.69 7.11 56.52 0.40 -7.29 16 19 H -0.20 -4.74 5.45 56.52 0.31 -4.44 16 20 H 0.11 2.64 4.89 -51.92 -0.25 2.38 16 21 H 0.02 0.31 7.83 -51.93 -0.41 -0.09 16 22 H 0.04 0.90 7.24 -51.93 -0.38 0.52 16 23 H 0.04 0.88 7.26 -51.93 -0.38 0.50 16 24 H 0.02 0.31 7.09 -51.93 -0.37 -0.06 16 25 H 0.11 2.46 4.26 -51.93 -0.22 2.24 16 26 H 0.04 0.67 8.11 -51.93 -0.42 0.25 16 27 H 0.04 0.69 7.27 -51.93 -0.38 0.31 16 28 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.07 1.13 6.13 -51.93 -0.32 0.81 16 30 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.05 0.85 8.14 -51.92 -0.42 0.43 16 33 H 0.33 7.14 7.78 -39.29 -0.31 6.83 16 34 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 241.47 15.07 3.64 3.64 Total: -1.00 -27.01 241.47 -5.93 -32.94 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -5.28 Total: 7.84 kcal Atomic # 6 Polarization: -20.73 SS G_CDS: 0.00 Total: -20.74 kcal Atomic # 7 Polarization: -40.14 SS G_CDS: 0.29 Total: -39.84 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -4.58 Total: 16.16 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -27.01 -5.93 -32.94 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260431883.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.552 kcal (2) G-P(sol) polarization free energy of solvation -27.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.942 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds