Wall clock time and date at job start Mon Mar 30 2020 02:10:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47049 * 2 1 4 4 C 1.53000 * 109.46946 * 119.99758 * 2 1 3 5 5 C 1.53001 * 109.47202 * 239.99598 * 2 1 3 6 6 H 1.08999 * 110.27642 * 298.57538 * 5 2 1 7 7 C 1.54595 * 110.30821 * 176.48420 * 5 2 1 8 8 C 1.55094 * 102.84588 * 219.18381 * 7 5 2 9 9 N 1.48534 * 103.28332 * 37.31105 * 8 7 5 10 10 C 1.47897 * 105.82068 * 320.84169 * 9 8 7 11 11 H 1.09003 * 109.91896 * 265.98549 * 10 9 8 12 12 C 1.50695 * 109.91946 * 144.68320 * 10 9 8 13 13 H 1.07997 * 120.00383 * 245.06895 * 12 10 9 14 14 C 1.37876 * 119.99904 * 65.07376 * 12 10 9 15 15 N 1.31514 * 120.00317 * 180.02562 * 14 12 10 16 16 Si 1.86800 * 119.99938 * 359.97438 * 14 12 10 17 17 H 1.48505 * 109.46652 * 90.00581 * 16 14 12 18 18 H 1.48496 * 109.47364 * 210.00408 * 16 14 12 19 19 H 1.48499 * 109.47195 * 330.00966 * 16 14 12 20 20 H 1.09008 * 109.47044 * 89.08432 * 1 2 3 21 21 H 1.09001 * 109.47313 * 209.07955 * 1 2 3 22 22 H 1.08997 * 109.47199 * 329.08257 * 1 2 3 23 23 H 1.08995 * 109.46962 * 31.42322 * 3 2 1 24 24 H 1.08993 * 109.47017 * 151.43080 * 3 2 1 25 25 H 1.09007 * 109.46405 * 271.42363 * 3 2 1 26 26 H 1.09002 * 109.47158 * 59.99698 * 4 2 1 27 27 H 1.08999 * 109.47431 * 180.02562 * 4 2 1 28 28 H 1.09001 * 109.47382 * 300.00256 * 4 2 1 29 29 H 1.09007 * 110.72476 * 337.49068 * 7 5 2 30 30 H 1.09004 * 110.72455 * 100.76896 * 7 5 2 31 31 H 1.08993 * 110.60254 * 278.87498 * 8 7 5 32 32 H 1.09009 * 110.82464 * 155.84614 * 8 7 5 33 33 H 1.00903 * 111.00580 * 81.35850 * 9 8 7 34 34 H 0.96996 * 120.00497 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 2.0400 -0.7213 -1.2492 6 1 1.7049 -1.7585 -1.2498 7 6 3.5832 -0.6561 -1.3140 8 6 3.8558 -0.4330 -2.8244 9 7 2.7532 0.4711 -3.2403 10 6 1.5511 -0.0009 -2.5194 11 1 0.9902 -0.6939 -3.1466 12 6 0.6846 1.1729 -2.1425 13 1 0.5299 1.4179 -1.1021 14 6 0.0891 1.9341 -3.1259 15 7 -0.6668 2.9588 -2.7970 16 14 0.3571 1.5107 -4.9254 17 1 -0.6932 0.5605 -5.3720 18 1 0.2837 2.7491 -5.7416 19 1 1.6937 0.8857 -5.0931 20 1 -0.3633 0.0164 -1.0276 21 1 -0.3634 -0.8981 0.4995 22 1 -0.3633 0.8816 0.5280 23 1 1.3343 2.0773 0.5358 24 1 3.0119 1.4842 0.4914 25 1 2.1370 1.7935 -1.0275 26 1 1.6766 -1.7489 1.2494 27 1 3.1299 -0.7209 1.2496 28 1 1.6766 -0.2074 2.1393 29 1 3.9589 0.1818 -0.7265 30 1 4.0235 -1.5940 -0.9754 31 1 3.8047 -1.3770 -3.3668 32 1 4.8235 0.0450 -2.9771 33 1 2.9630 1.4295 -3.0048 34 1 -1.0854 3.4946 -3.4888 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260431883.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:38 Heat of formation + Delta-G solvation = 14.526757 kcal Electronic energy + Delta-G solvation = -13966.730767 eV Core-core repulsion = 11900.011299 eV Total energy + Delta-G solvation = -2066.719468 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.04348 -36.26727 -34.51909 -31.11081 -29.35708 -28.11522 -27.74840 -25.79066 -22.13773 -21.69717 -19.14885 -18.77643 -16.79092 -16.08943 -15.63304 -15.28813 -14.95349 -14.72606 -14.36213 -13.74563 -13.29901 -13.05899 -12.78042 -12.66470 -12.38440 -12.31691 -12.16734 -11.91132 -11.70303 -11.45064 -11.10703 -11.00093 -10.85425 -10.55055 -10.13571 -8.86384 -8.05492 -6.05616 1.47109 1.55403 1.89630 2.62398 3.21474 3.83743 4.01266 4.05233 4.29300 4.44930 4.51431 4.60921 4.84490 4.87684 4.92115 4.97807 5.03707 5.09175 5.16042 5.18613 5.26102 5.38998 5.42722 5.52437 5.60114 5.68253 5.71396 5.91620 5.97619 6.42875 6.47650 6.98215 7.10844 7.56761 9.01271 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.035940 B = 0.017754 C = 0.013507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.880081 B = 1576.755053 C = 2072.575578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.040 4.040 3 C -0.142 4.142 4 C -0.133 4.133 5 C -0.089 4.089 6 H 0.058 0.942 7 C -0.140 4.140 8 C 0.036 3.964 9 N -0.687 5.687 10 C 0.166 3.834 11 H 0.020 0.980 12 C -0.526 4.526 13 H 0.122 0.878 14 C 0.024 3.976 15 N -0.946 5.946 16 Si 0.894 3.106 17 H -0.305 1.305 18 H -0.317 1.317 19 H -0.181 1.181 20 H 0.078 0.922 21 H 0.038 0.962 22 H 0.027 0.973 23 H 0.024 0.976 24 H 0.041 0.959 25 H 0.083 0.917 26 H 0.055 0.945 27 H 0.061 0.939 28 H 0.049 0.951 29 H 0.068 0.932 30 H 0.078 0.922 31 H 0.069 0.931 32 H 0.077 0.923 33 H 0.331 0.669 34 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.586 -7.549 4.345 12.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.041 4.041 3 C -0.199 4.199 4 C -0.190 4.190 5 C -0.109 4.109 6 H 0.077 0.923 7 C -0.179 4.179 8 C -0.093 4.093 9 N -0.316 5.316 10 C 0.058 3.942 11 H 0.037 0.963 12 C -0.563 4.563 13 H 0.139 0.861 14 C -0.174 4.174 15 N -0.587 5.587 16 Si 0.721 3.279 17 H -0.233 1.233 18 H -0.245 1.245 19 H -0.102 1.102 20 H 0.096 0.904 21 H 0.057 0.943 22 H 0.046 0.954 23 H 0.043 0.957 24 H 0.060 0.940 25 H 0.101 0.899 26 H 0.074 0.926 27 H 0.080 0.920 28 H 0.068 0.932 29 H 0.086 0.914 30 H 0.096 0.904 31 H 0.087 0.913 32 H 0.096 0.904 33 H 0.147 0.853 34 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 8.376 -7.742 3.606 11.963 hybrid contribution -0.591 0.641 -0.115 0.879 sum 7.785 -7.102 3.491 11.101 Atomic orbital electron populations 1.22479 0.95955 0.98420 1.03462 1.20233 0.94605 0.94978 0.94239 1.22467 0.98109 0.95701 1.03593 1.21916 1.00933 0.99673 0.96483 1.22274 0.95346 0.98003 0.95268 0.92310 1.23144 0.94851 1.02061 0.97849 1.23161 0.94935 0.97710 0.93537 1.63396 1.03911 1.06154 1.58181 1.20164 0.89630 0.94346 0.90056 0.96251 1.22830 1.25969 1.10173 0.97369 0.86124 1.25678 0.94681 0.94902 1.02104 1.70034 1.34442 1.20035 1.34184 0.86695 0.82846 0.76405 0.81924 1.23318 1.24546 1.10190 0.90362 0.94287 0.95414 0.95697 0.93978 0.89878 0.92621 0.92035 0.93224 0.91373 0.90366 0.91259 0.90445 0.85279 0.93549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.88 7.62 71.98 0.55 -5.33 16 2 C -0.04 -1.43 0.54 -52.18 -0.03 -1.46 16 3 C -0.14 -5.46 6.48 71.98 0.47 -4.99 16 4 C -0.13 -3.77 7.97 71.98 0.57 -3.20 16 5 C -0.09 -3.15 2.35 -9.91 -0.02 -3.17 16 6 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 7 C -0.14 -4.11 5.43 31.85 0.17 -3.94 16 8 C 0.04 1.11 7.55 86.70 0.65 1.76 16 9 N -0.69 -27.14 4.60 -483.74 -2.22 -29.36 16 10 C 0.17 7.15 2.12 44.31 0.09 7.24 16 11 H 0.02 0.91 7.39 -2.39 -0.02 0.89 16 12 C -0.53 -26.44 4.11 25.60 0.11 -26.33 16 13 H 0.12 6.20 2.41 -2.91 -0.01 6.19 16 14 C 0.02 1.34 5.47 84.65 0.46 1.80 16 15 N -0.95 -57.22 13.96 21.45 0.30 -56.92 16 16 Si 0.89 43.93 26.94 68.60 1.85 45.78 16 17 H -0.31 -15.51 7.11 99.48 0.71 -14.80 16 18 H -0.32 -16.24 7.11 99.48 0.71 -15.54 16 19 H -0.18 -8.21 5.45 99.48 0.54 -7.67 16 20 H 0.08 3.68 4.89 -2.38 -0.01 3.67 16 21 H 0.04 1.36 7.83 -2.39 -0.02 1.34 16 22 H 0.03 1.16 7.24 -2.39 -0.02 1.14 16 23 H 0.02 1.01 7.26 -2.39 -0.02 0.99 16 24 H 0.04 1.39 7.09 -2.39 -0.02 1.37 16 25 H 0.08 3.65 4.26 -2.38 -0.01 3.64 16 26 H 0.05 1.46 8.11 -2.39 -0.02 1.44 16 27 H 0.06 1.56 7.27 -2.39 -0.02 1.54 16 28 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.07 2.00 6.13 -2.38 -0.01 1.98 16 30 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.08 2.07 8.14 -2.38 -0.02 2.05 16 33 H 0.33 13.59 7.78 -89.69 -0.70 12.89 16 34 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 Total: -1.00 -58.59 241.47 3.17 -55.42 By element: Atomic # 1 Polarization: 22.49 SS G_CDS: 0.22 Total: 22.71 kcal Atomic # 6 Polarization: -40.65 SS G_CDS: 3.03 Total: -37.62 kcal Atomic # 7 Polarization: -84.36 SS G_CDS: -1.92 Total: -86.29 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 1.85 Total: 45.78 kcal Total: -58.59 3.17 -55.42 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260431883.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.943 kcal (2) G-P(sol) polarization free energy of solvation -58.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.416 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds