Wall clock time and date at job start Mon Mar 30 2020 02:20:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47246 * 2 1 4 4 C 1.53002 * 109.47340 * 119.99976 * 2 1 3 5 5 H 1.09000 * 110.89896 * 51.74621 * 4 2 1 6 6 C 1.55266 * 111.08597 * 287.87750 * 4 2 1 7 7 C 1.54322 * 103.08281 * 206.37919 * 6 4 2 8 8 N 1.47452 * 107.23106 * 22.20376 * 7 6 4 9 9 C 1.47839 * 108.56917 * 0.98925 * 8 7 6 10 10 H 1.08998 * 110.37398 * 94.84481 * 9 8 7 11 11 C 1.52998 * 110.37427 * 217.07583 * 9 8 7 12 12 C 1.50697 * 109.47015 * 295.63998 * 11 9 8 13 13 H 1.08004 * 119.99939 * 359.97438 * 12 11 9 14 14 C 1.37875 * 119.99992 * 180.02562 * 12 11 9 15 15 N 1.31514 * 120.00301 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 120.00176 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47498 * 179.97438 * 16 14 12 18 18 H 1.48499 * 109.47165 * 59.99387 * 16 14 12 19 19 H 1.48506 * 109.46919 * 299.99763 * 16 14 12 20 20 H 1.09006 * 109.47001 * 305.11288 * 1 2 3 21 21 H 1.09002 * 109.46957 * 65.11175 * 1 2 3 22 22 H 1.08997 * 109.47118 * 185.11247 * 1 2 3 23 23 H 1.08998 * 109.47397 * 240.00146 * 2 1 3 24 24 H 1.09002 * 109.47286 * 172.89497 * 3 2 1 25 25 H 1.08994 * 109.47390 * 292.90012 * 3 2 1 26 26 H 1.09007 * 109.47233 * 52.89944 * 3 2 1 27 27 H 1.08997 * 110.74370 * 87.94450 * 6 4 2 28 28 H 1.08999 * 110.60593 * 324.74733 * 6 4 2 29 29 H 1.08995 * 109.89185 * 262.79884 * 7 6 4 30 30 H 1.09004 * 110.02188 * 141.68074 * 7 6 4 31 31 H 1.00900 * 110.99849 * 238.72146 * 8 7 6 32 32 H 1.09002 * 109.47169 * 175.64153 * 11 9 8 33 33 H 1.08996 * 109.47340 * 55.63964 * 11 9 8 34 34 H 0.97001 * 119.99696 * 359.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.5752 -1.7021 1.3489 6 6 1.8069 0.1353 2.5231 7 6 2.9129 -0.3553 3.4811 8 7 3.9736 -0.9568 2.6522 9 6 3.5845 -0.8382 1.2308 10 1 4.0275 0.0545 0.7893 11 6 4.0150 -2.0847 0.4550 12 6 5.5189 -2.1805 0.4529 13 1 6.1087 -1.4274 0.9544 14 6 6.1420 -3.2289 -0.1902 15 7 5.4239 -4.1457 -0.8013 16 14 8.0063 -3.3481 -0.1922 17 1 8.4242 -4.5578 -0.9453 18 1 8.4978 -3.4416 1.2059 19 1 8.5788 -2.1398 -0.8384 20 1 -0.3633 0.5911 0.8407 21 1 -0.3633 0.4325 -0.9322 22 1 -0.3633 -1.0235 0.0916 23 1 1.8933 -0.5138 -0.8900 24 1 3.1226 1.4451 0.1271 25 1 1.7841 1.9184 -0.9466 26 1 1.5766 1.9917 0.8197 27 1 0.8198 -0.0578 2.9429 28 1 1.9318 1.1951 2.3009 29 1 2.5076 -1.1020 4.1639 30 1 3.3160 0.4846 4.0470 31 1 4.1274 -1.9212 2.9057 32 1 3.6539 -2.0166 -0.5712 33 1 3.5952 -2.9713 0.9299 34 1 4.4559 -4.0844 -0.7993 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260439470.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:21 Heat of formation + Delta-G solvation = -29.022685 kcal Electronic energy + Delta-G solvation = -13152.786534 eV Core-core repulsion = 11084.178621 eV Total energy + Delta-G solvation = -2068.607914 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.97343 -34.55353 -33.27315 -30.07286 -28.29539 -27.02643 -25.63568 -22.68515 -21.82105 -20.01391 -18.48461 -16.69147 -15.51983 -15.15596 -14.21187 -13.77435 -13.64071 -13.29943 -12.78320 -12.50294 -12.40167 -11.88951 -11.63445 -11.29974 -11.17119 -10.94422 -10.66359 -10.50741 -10.25405 -10.09079 -10.04060 -9.92249 -9.51489 -8.45698 -8.27145 -7.63122 -6.27886 -3.95676 3.50001 3.52000 3.70571 4.61029 4.87715 4.96597 5.07596 5.26784 5.44486 5.46444 5.49696 5.63710 5.78749 5.86888 5.90306 5.97501 6.04647 6.15227 6.22790 6.24762 6.39907 6.43720 6.49365 6.60473 6.78702 6.87346 7.24833 7.49213 7.78819 8.19020 8.31098 8.60020 8.97405 9.75384 11.12087 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.042760 B = 0.009698 C = 0.008794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.658645 B = 2886.558355 C = 3183.123973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.084 4.084 3 C -0.149 4.149 4 C -0.116 4.116 5 H 0.068 0.932 6 C -0.140 4.140 7 C 0.045 3.955 8 N -0.673 5.673 9 C 0.098 3.902 10 H 0.077 0.923 11 C 0.006 3.994 12 C -0.587 4.587 13 H 0.056 0.944 14 C 0.011 3.989 15 N -0.918 5.918 16 Si 1.069 2.931 17 H -0.285 1.285 18 H -0.288 1.288 19 H -0.289 1.289 20 H 0.050 0.950 21 H 0.049 0.951 22 H 0.050 0.950 23 H 0.073 0.927 24 H 0.063 0.937 25 H 0.048 0.952 26 H 0.053 0.947 27 H 0.058 0.942 28 H 0.074 0.926 29 H 0.039 0.961 30 H 0.063 0.937 31 H 0.342 0.658 32 H 0.012 0.988 33 H 0.003 0.997 34 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.179 8.201 4.129 12.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.103 4.103 3 C -0.206 4.206 4 C -0.136 4.136 5 H 0.086 0.914 6 C -0.179 4.179 7 C -0.085 4.085 8 N -0.302 5.302 9 C -0.012 4.012 10 H 0.094 0.906 11 C -0.031 4.031 12 C -0.626 4.626 13 H 0.074 0.926 14 C -0.192 4.192 15 N -0.555 5.555 16 Si 0.897 3.103 17 H -0.210 1.210 18 H -0.215 1.215 19 H -0.216 1.216 20 H 0.069 0.931 21 H 0.068 0.932 22 H 0.070 0.930 23 H 0.091 0.909 24 H 0.082 0.918 25 H 0.067 0.933 26 H 0.072 0.928 27 H 0.077 0.923 28 H 0.092 0.908 29 H 0.058 0.942 30 H 0.081 0.919 31 H 0.159 0.841 32 H 0.031 0.969 33 H 0.021 0.979 34 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.449 7.847 3.623 10.784 hybrid contribution -2.090 0.217 0.526 2.166 sum -8.540 8.064 4.149 12.456 Atomic orbital electron populations 1.21836 0.95924 1.01296 1.00992 1.20929 0.94794 0.96219 0.98332 1.21965 1.01971 0.95933 1.00691 1.22927 0.98898 0.97964 0.93773 0.91389 1.22959 0.98145 1.00657 0.96095 1.22604 0.91248 0.98695 0.95920 1.61756 1.41333 1.23683 1.03440 1.22571 0.89569 1.00659 0.88355 0.90550 1.19479 0.97663 0.91318 0.94650 1.22031 0.91253 1.12166 1.37118 0.92570 1.25835 1.06919 0.92873 0.93560 1.70800 1.07895 1.35117 1.41694 0.83542 0.74509 0.75925 0.76276 1.21049 1.21481 1.21556 0.93090 0.93176 0.93041 0.90864 0.91808 0.93340 0.92831 0.92303 0.90776 0.94207 0.91908 0.84086 0.96949 0.97889 0.92380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 9.03 37.15 0.34 -1.50 16 2 C -0.08 -1.29 2.79 -90.62 -0.25 -1.54 16 3 C -0.15 -2.10 8.31 37.16 0.31 -1.79 16 4 C -0.12 -1.98 2.26 -88.41 -0.20 -2.18 16 5 H 0.07 1.23 8.06 -51.93 -0.42 0.81 16 6 C -0.14 -2.09 5.79 -24.84 -0.14 -2.23 16 7 C 0.05 0.73 7.59 -2.83 -0.02 0.71 16 8 N -0.67 -13.55 7.05 -103.84 -0.73 -14.29 16 9 C 0.10 2.04 2.73 -66.19 -0.18 1.86 16 10 H 0.08 1.69 6.05 -51.93 -0.31 1.37 16 11 C 0.01 0.16 3.65 -27.89 -0.10 0.06 16 12 C -0.59 -16.77 8.82 -34.44 -0.30 -17.08 16 13 H 0.06 1.63 7.74 -52.48 -0.41 1.22 16 14 C 0.01 0.32 5.46 -17.82 -0.10 0.22 16 15 N -0.92 -28.40 13.65 55.43 0.76 -27.65 16 16 Si 1.07 25.93 29.90 -169.99 -5.08 20.84 16 17 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 18 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 20 H 0.05 0.60 7.87 -51.93 -0.41 0.19 16 21 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 22 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 23 H 0.07 1.26 7.90 -51.93 -0.41 0.85 16 24 H 0.06 1.00 6.13 -51.93 -0.32 0.69 16 25 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.05 0.68 6.38 -51.92 -0.33 0.35 16 27 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.07 1.05 5.54 -51.93 -0.29 0.76 16 29 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.34 7.22 8.30 -39.29 -0.33 6.90 16 32 H 0.01 0.33 7.77 -51.93 -0.40 -0.07 16 33 H 0.00 0.08 7.96 -51.93 -0.41 -0.33 16 34 H 0.27 8.19 7.22 -40.82 -0.29 7.90 16 LS Contribution 264.11 15.07 3.98 3.98 Total: -1.00 -30.04 264.11 -7.40 -37.44 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -5.67 Total: 3.14 kcal Atomic # 6 Polarization: -22.81 SS G_CDS: -0.66 Total: -23.47 kcal Atomic # 7 Polarization: -41.96 SS G_CDS: 0.02 Total: -41.93 kcal Atomic # 14 Polarization: 25.93 SS G_CDS: -5.08 Total: 20.84 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -30.04 -7.40 -37.44 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260439470.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.416 kcal (2) G-P(sol) polarization free energy of solvation -30.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds