Wall clock time and date at job start Mon Mar 30 2020 02:20:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47246 * 2 1 4 4 C 1.53002 * 109.47340 * 119.99976 * 2 1 3 5 5 H 1.09000 * 110.89896 * 51.74621 * 4 2 1 6 6 C 1.55266 * 111.08597 * 287.87750 * 4 2 1 7 7 C 1.54322 * 103.08281 * 206.37919 * 6 4 2 8 8 N 1.47452 * 107.23106 * 22.20376 * 7 6 4 9 9 C 1.47839 * 108.56917 * 0.98925 * 8 7 6 10 10 H 1.08998 * 110.37398 * 94.84481 * 9 8 7 11 11 C 1.52998 * 110.37427 * 217.07583 * 9 8 7 12 12 C 1.50697 * 109.47015 * 295.63998 * 11 9 8 13 13 H 1.08004 * 119.99939 * 359.97438 * 12 11 9 14 14 C 1.37875 * 119.99992 * 180.02562 * 12 11 9 15 15 N 1.31514 * 120.00301 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 120.00176 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47498 * 179.97438 * 16 14 12 18 18 H 1.48499 * 109.47165 * 59.99387 * 16 14 12 19 19 H 1.48506 * 109.46919 * 299.99763 * 16 14 12 20 20 H 1.09006 * 109.47001 * 305.11288 * 1 2 3 21 21 H 1.09002 * 109.46957 * 65.11175 * 1 2 3 22 22 H 1.08997 * 109.47118 * 185.11247 * 1 2 3 23 23 H 1.08998 * 109.47397 * 240.00146 * 2 1 3 24 24 H 1.09002 * 109.47286 * 172.89497 * 3 2 1 25 25 H 1.08994 * 109.47390 * 292.90012 * 3 2 1 26 26 H 1.09007 * 109.47233 * 52.89944 * 3 2 1 27 27 H 1.08997 * 110.74370 * 87.94450 * 6 4 2 28 28 H 1.08999 * 110.60593 * 324.74733 * 6 4 2 29 29 H 1.08995 * 109.89185 * 262.79884 * 7 6 4 30 30 H 1.09004 * 110.02188 * 141.68074 * 7 6 4 31 31 H 1.00900 * 110.99849 * 238.72146 * 8 7 6 32 32 H 1.09002 * 109.47169 * 175.64153 * 11 9 8 33 33 H 1.08996 * 109.47340 * 55.63964 * 11 9 8 34 34 H 0.97001 * 119.99696 * 359.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.5752 -1.7021 1.3489 6 6 1.8069 0.1353 2.5231 7 6 2.9129 -0.3553 3.4811 8 7 3.9736 -0.9568 2.6522 9 6 3.5845 -0.8382 1.2308 10 1 4.0275 0.0545 0.7893 11 6 4.0150 -2.0847 0.4550 12 6 5.5189 -2.1805 0.4529 13 1 6.1087 -1.4274 0.9544 14 6 6.1420 -3.2289 -0.1902 15 7 5.4239 -4.1457 -0.8013 16 14 8.0063 -3.3481 -0.1922 17 1 8.4242 -4.5578 -0.9453 18 1 8.4978 -3.4416 1.2059 19 1 8.5788 -2.1398 -0.8384 20 1 -0.3633 0.5911 0.8407 21 1 -0.3633 0.4325 -0.9322 22 1 -0.3633 -1.0235 0.0916 23 1 1.8933 -0.5138 -0.8900 24 1 3.1226 1.4451 0.1271 25 1 1.7841 1.9184 -0.9466 26 1 1.5766 1.9917 0.8197 27 1 0.8198 -0.0578 2.9429 28 1 1.9318 1.1951 2.3009 29 1 2.5076 -1.1020 4.1639 30 1 3.3160 0.4846 4.0470 31 1 4.1274 -1.9212 2.9057 32 1 3.6539 -2.0166 -0.5712 33 1 3.5952 -2.9713 0.9299 34 1 4.4559 -4.0844 -0.7993 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260439470.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:21 Heat of formation + Delta-G solvation = -48.560881 kcal Electronic energy + Delta-G solvation = -13153.633774 eV Core-core repulsion = 11084.178621 eV Total energy + Delta-G solvation = -2069.455153 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.42061 -36.01177 -35.28091 -31.89008 -29.67144 -28.12788 -27.49343 -24.70246 -23.12173 -21.63117 -19.83835 -18.83400 -16.97623 -16.63423 -15.62093 -15.52487 -15.16164 -14.91167 -14.35015 -14.22993 -13.61545 -13.41375 -13.02491 -12.81867 -12.78564 -12.48559 -12.20005 -12.02464 -11.91990 -11.67910 -11.43817 -11.36815 -11.17591 -10.56626 -10.52553 -9.19240 -8.64453 -6.33074 1.52436 1.60898 1.80407 2.57923 3.16990 3.43660 3.67464 3.79684 3.96839 4.22834 4.27922 4.33247 4.51956 4.56566 4.72700 4.74586 4.82096 4.83722 4.93263 5.01715 5.04425 5.12936 5.14318 5.25736 5.26669 5.42012 5.48568 5.64259 6.01862 6.21946 6.26206 6.51422 6.65797 7.46798 8.75679 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.042760 B = 0.009698 C = 0.008794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.658645 B = 2886.558355 C = 3183.123973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.086 4.086 3 C -0.144 4.144 4 C -0.110 4.110 5 H 0.054 0.946 6 C -0.128 4.128 7 C 0.041 3.959 8 N -0.689 5.689 9 C 0.103 3.897 10 H 0.064 0.936 11 C 0.013 3.987 12 C -0.596 4.596 13 H 0.050 0.950 14 C -0.042 4.042 15 N -0.942 5.942 16 Si 1.117 2.883 17 H -0.285 1.285 18 H -0.271 1.271 19 H -0.272 1.272 20 H 0.069 0.931 21 H 0.063 0.937 22 H 0.046 0.954 23 H 0.043 0.957 24 H 0.041 0.959 25 H 0.062 0.938 26 H 0.074 0.926 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.054 0.946 30 H 0.077 0.923 31 H 0.332 0.668 32 H -0.010 1.010 33 H -0.017 1.017 34 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.745 9.740 5.163 14.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.105 4.105 3 C -0.201 4.201 4 C -0.130 4.130 5 H 0.073 0.927 6 C -0.166 4.166 7 C -0.088 4.088 8 N -0.318 5.318 9 C -0.007 4.007 10 H 0.082 0.918 11 C -0.024 4.024 12 C -0.634 4.634 13 H 0.068 0.932 14 C -0.239 4.239 15 N -0.580 5.580 16 Si 0.938 3.062 17 H -0.210 1.210 18 H -0.196 1.196 19 H -0.197 1.197 20 H 0.088 0.912 21 H 0.082 0.918 22 H 0.066 0.934 23 H 0.061 0.939 24 H 0.060 0.940 25 H 0.081 0.919 26 H 0.093 0.907 27 H 0.104 0.896 28 H 0.105 0.895 29 H 0.073 0.927 30 H 0.095 0.905 31 H 0.148 0.852 32 H 0.008 0.992 33 H 0.001 0.999 34 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -7.041 9.413 4.670 12.649 hybrid contribution -1.933 -0.260 0.214 1.962 sum -8.974 9.154 4.883 13.717 Atomic orbital electron populations 1.21774 0.93377 1.01628 1.02584 1.20930 0.96909 0.96550 0.96085 1.21925 1.00562 0.95206 1.02404 1.22818 0.95606 0.98347 0.96260 0.92731 1.22921 0.99000 1.00632 0.94009 1.22754 0.90768 0.99333 0.95900 1.61744 1.43629 1.23114 1.03294 1.22335 0.92520 0.97365 0.88434 0.91806 1.19348 0.96143 0.92951 0.93950 1.22346 0.92830 1.11756 1.36449 0.93160 1.27362 1.11216 0.92494 0.92808 1.70934 1.07256 1.36329 1.43480 0.82932 0.69368 0.76510 0.77354 1.21026 1.19600 1.19691 0.91191 0.91824 0.93445 0.93859 0.94028 0.91930 0.90677 0.89602 0.89519 0.92744 0.90506 0.85215 0.99206 0.99871 0.93831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.16 9.03 71.98 0.65 -2.51 16 2 C -0.09 -2.56 2.79 -10.79 -0.03 -2.59 16 3 C -0.14 -3.80 8.31 71.98 0.60 -3.20 16 4 C -0.11 -3.69 2.26 -9.36 -0.02 -3.72 16 5 H 0.05 1.97 8.06 -2.39 -0.02 1.95 16 6 C -0.13 -3.40 5.79 31.82 0.18 -3.22 16 7 C 0.04 1.24 7.59 86.65 0.66 1.90 16 8 N -0.69 -27.54 7.05 -482.45 -3.40 -30.94 16 9 C 0.10 4.37 2.73 45.39 0.12 4.49 16 10 H 0.06 2.88 6.05 -2.39 -0.01 2.86 16 11 C 0.01 0.71 3.65 29.85 0.11 0.82 16 12 C -0.60 -34.85 8.82 25.60 0.23 -34.63 16 13 H 0.05 2.95 7.74 -2.91 -0.02 2.93 16 14 C -0.04 -2.52 5.46 84.65 0.46 -2.05 16 15 N -0.94 -59.79 13.65 21.45 0.29 -59.49 16 16 Si 1.12 52.17 29.90 68.60 2.05 54.22 16 17 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 18 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 19 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 20 H 0.07 1.37 7.87 -2.38 -0.02 1.35 16 21 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 22 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 23 H 0.04 1.53 7.90 -2.39 -0.02 1.51 16 24 H 0.04 1.27 6.13 -2.39 -0.01 1.26 16 25 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 26 H 0.07 1.65 6.38 -2.38 -0.02 1.64 16 27 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 28 H 0.09 2.12 5.54 -2.39 -0.01 2.11 16 29 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.08 2.12 8.14 -2.38 -0.02 2.10 16 31 H 0.33 14.19 8.30 -89.69 -0.74 13.44 16 32 H -0.01 -0.58 7.77 -2.39 -0.02 -0.60 16 33 H -0.02 -0.96 7.96 -2.39 -0.02 -0.98 16 34 H 0.25 16.24 7.22 -92.71 -0.67 15.57 16 Total: -1.00 -65.71 264.11 2.32 -63.39 By element: Atomic # 1 Polarization: 17.12 SS G_CDS: 0.42 Total: 17.53 kcal Atomic # 6 Polarization: -47.66 SS G_CDS: 2.96 Total: -44.71 kcal Atomic # 7 Polarization: -87.33 SS G_CDS: -3.11 Total: -90.44 kcal Atomic # 14 Polarization: 52.17 SS G_CDS: 2.05 Total: 54.22 kcal Total: -65.71 2.32 -63.39 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260439470.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.829 kcal (2) G-P(sol) polarization free energy of solvation -65.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds