Wall clock time and date at job start Mon Mar 30 2020 01:51:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 119.99692 * 2 1 4 4 H 1.48506 * 109.47095 * 239.99827 * 3 2 1 5 5 H 1.48503 * 109.47499 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47152 * 119.99933 * 3 2 1 7 7 C 1.37876 * 120.00071 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99594 * 180.02562 * 7 2 1 9 9 C 1.51570 * 119.99888 * 0.02562 * 7 2 1 10 10 N 1.45704 * 108.74540 * 302.49154 * 9 7 2 11 11 C 1.53136 * 108.18678 * 179.97438 * 9 7 2 12 12 C 1.51824 * 112.42068 * 132.64922 * 11 9 7 13 13 C 1.52370 * 112.43974 * 66.11249 * 12 11 9 14 14 C 1.51888 * 111.99036 * 53.65434 * 13 12 11 15 15 C 1.51770 * 114.23324 * 278.52913 * 14 13 12 16 16 C 1.52281 * 113.82255 * 339.14755 * 15 14 13 17 17 C 1.53744 * 107.87100 * 63.34367 * 9 7 2 18 18 H 0.97000 * 120.00542 * 0.02562 * 1 2 3 19 19 H 1.00900 * 110.99680 * 306.47080 * 10 9 7 20 20 H 1.00903 * 110.99956 * 70.41871 * 10 9 7 21 21 H 1.09927 * 108.11190 * 12.27994 * 11 9 7 22 22 H 1.09055 * 109.50479 * 255.55209 * 11 9 7 23 23 H 1.10161 * 108.68724 * 186.09175 * 12 11 9 24 24 H 1.09248 * 110.47847 * 302.97911 * 12 11 9 25 25 H 1.11041 * 107.15151 * 171.25164 * 13 12 11 26 26 H 1.07987 * 111.81551 * 286.54769 * 13 12 11 27 27 H 1.10051 * 108.77982 * 156.77488 * 14 13 12 28 28 H 1.09923 * 108.98864 * 40.78937 * 14 13 12 29 29 H 1.10130 * 108.76550 * 218.16154 * 15 14 13 30 30 H 1.09596 * 109.67378 * 101.97923 * 15 14 13 31 31 H 1.07270 * 112.92184 * 343.71104 * 16 15 14 32 32 H 1.10390 * 108.05122 * 224.88637 * 16 15 14 33 33 H 1.08797 * 109.23679 * 306.27606 * 17 9 7 34 34 H 1.08605 * 109.54037 * 67.10618 * 17 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0010 9 6 1.2467 -2.5067 0.0005 10 7 0.3702 -2.5413 1.1640 11 6 2.2676 -3.6480 0.0005 12 6 1.9450 -4.7136 1.0328 13 6 0.6542 -5.4585 0.7158 14 6 0.6594 -6.0325 -0.6904 15 6 0.2973 -5.0323 -1.7729 16 6 -0.4726 -3.8227 -1.2600 17 6 0.4428 -2.5873 -1.3075 18 1 -0.4851 0.8400 -0.0004 19 1 0.8873 -2.3617 2.0116 20 1 -0.3932 -1.8895 1.0612 21 1 3.2564 -3.2221 0.2228 22 1 2.3192 -4.0904 -0.9949 23 1 2.7700 -5.4431 1.0567 24 1 1.8838 -4.2729 2.0306 25 1 0.5861 -6.3114 1.4236 26 1 -0.2175 -4.8507 0.9079 27 1 -0.0497 -6.8730 -0.7326 28 1 1.6546 -6.4477 -0.9035 29 1 -0.3176 -5.5396 -2.5327 30 1 1.2070 -4.6941 -2.2821 31 1 -0.8870 -3.9750 -0.2824 32 1 -1.3119 -3.6330 -1.9515 33 1 -0.1689 -1.6932 -1.4080 34 1 1.1248 -2.6722 -2.1484 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260441328.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:26 Heat of formation + Delta-G solvation = -34.304785 kcal Electronic energy + Delta-G solvation = -13799.798016 eV Core-core repulsion = 11730.961054 eV Total energy + Delta-G solvation = -2068.836963 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.79258 -35.96888 -33.62666 -33.13722 -30.10493 -28.00061 -26.94689 -25.16031 -21.92682 -20.73715 -19.41026 -18.42486 -16.74553 -16.34092 -15.78467 -15.67101 -14.74859 -14.46546 -14.07910 -13.87287 -13.37107 -13.15469 -12.91253 -12.54592 -12.39101 -12.12103 -11.96876 -11.71417 -11.51052 -11.30097 -11.16512 -10.90645 -10.74407 -10.46116 -10.11330 -8.87351 -7.91100 -6.19954 1.36775 1.39231 1.45044 2.41544 3.16713 4.08340 4.17035 4.24813 4.47278 4.52801 4.66748 4.70030 4.81707 4.90112 5.06745 5.10477 5.24620 5.26949 5.34841 5.37903 5.49422 5.56378 5.57371 5.70826 5.74230 5.88649 6.09486 6.11921 6.13716 6.36692 6.82903 7.27235 7.34305 7.59023 8.92352 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.054226 B = 0.012120 C = 0.011345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 516.230735 B = 2309.657228 C = 2467.357973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.029 3.971 3 Si 0.940 3.060 4 H -0.282 1.282 5 H -0.285 1.285 6 H -0.278 1.278 7 C -0.563 4.563 8 H 0.034 0.966 9 C 0.236 3.764 10 N -0.816 5.816 11 C -0.097 4.097 12 C -0.082 4.082 13 C -0.105 4.105 14 C -0.105 4.105 15 C -0.108 4.108 16 C -0.107 4.107 17 C -0.095 4.095 18 H 0.261 0.739 19 H 0.311 0.689 20 H 0.339 0.661 21 H 0.019 0.981 22 H 0.052 0.948 23 H 0.040 0.960 24 H 0.048 0.952 25 H 0.045 0.955 26 H 0.077 0.923 27 H 0.063 0.937 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.044 0.956 31 H 0.082 0.918 32 H 0.024 0.976 33 H 0.049 0.951 34 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.062 -8.275 -0.179 8.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.171 4.171 3 Si 0.767 3.233 4 H -0.208 1.208 5 H -0.210 1.210 6 H -0.204 1.204 7 C -0.603 4.603 8 H 0.052 0.948 9 C 0.143 3.857 10 N -0.344 5.344 11 C -0.136 4.136 12 C -0.120 4.120 13 C -0.143 4.143 14 C -0.142 4.142 15 C -0.145 4.145 16 C -0.144 4.144 17 C -0.134 4.134 18 H 0.070 0.930 19 H 0.120 0.880 20 H 0.153 0.847 21 H 0.038 0.962 22 H 0.070 0.930 23 H 0.059 0.941 24 H 0.067 0.933 25 H 0.064 0.936 26 H 0.096 0.904 27 H 0.081 0.919 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.063 0.937 31 H 0.101 0.899 32 H 0.043 0.957 33 H 0.068 0.932 34 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -0.224 -8.936 -0.413 8.948 hybrid contribution 0.963 2.460 -0.084 2.643 sum 0.739 -6.476 -0.497 6.537 Atomic orbital electron populations 1.69761 1.06202 1.26945 1.51479 1.25510 0.95629 1.01186 0.94789 0.85917 0.78621 0.80603 0.78152 1.20755 1.21030 1.20372 1.22787 0.92765 0.94060 1.50657 0.94757 1.18293 0.89156 0.89552 0.88653 1.59007 1.14181 1.57575 1.03620 1.21640 0.97193 0.95958 0.98761 1.20914 0.96765 0.96053 0.98218 1.21210 0.98926 0.98762 0.95356 1.21187 1.01174 0.97317 0.94523 1.21446 0.99374 0.95982 0.97721 1.21528 0.96871 0.94656 1.01384 1.21837 0.97443 0.97246 0.96856 0.92953 0.87953 0.84659 0.96224 0.92954 0.94120 0.93347 0.93584 0.90421 0.91853 0.92712 0.92589 0.93687 0.89928 0.95734 0.93239 0.95722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -48.64 9.64 21.45 0.21 -48.43 16 2 C 0.03 1.52 5.17 84.65 0.44 1.96 16 3 Si 0.94 43.36 29.54 68.60 2.03 45.39 16 4 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 5 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 6 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 7 C -0.56 -30.19 7.91 25.88 0.20 -29.99 16 8 H 0.03 1.90 7.20 -2.91 -0.02 1.87 16 9 C 0.24 11.05 0.48 3.58 0.00 11.06 16 10 N -0.82 -36.60 5.48 -154.18 -0.84 -37.44 16 11 C -0.10 -4.06 4.73 30.25 0.14 -3.92 16 12 C -0.08 -2.88 4.89 30.00 0.15 -2.73 16 13 C -0.11 -3.36 4.84 30.02 0.15 -3.21 16 14 C -0.10 -3.04 5.25 29.82 0.16 -2.89 16 15 C -0.11 -3.52 4.99 29.95 0.15 -3.37 16 16 C -0.11 -4.14 5.10 30.63 0.16 -3.99 16 17 C -0.10 -4.44 4.44 31.12 0.14 -4.30 16 18 H 0.26 13.66 8.31 -92.71 -0.77 12.89 16 19 H 0.31 14.04 8.32 -89.69 -0.75 13.29 16 20 H 0.34 16.64 6.89 -89.69 -0.62 16.03 16 21 H 0.02 0.85 7.20 -1.89 -0.01 0.84 16 22 H 0.05 2.11 4.79 -2.36 -0.01 2.10 16 23 H 0.04 1.28 8.24 -1.77 -0.01 1.26 16 24 H 0.05 1.75 7.28 -2.26 -0.02 1.74 16 25 H 0.05 1.28 8.30 -1.28 -0.01 1.27 16 26 H 0.08 2.75 4.72 -2.92 -0.01 2.74 16 27 H 0.06 1.58 8.23 -1.82 -0.02 1.56 16 28 H 0.05 1.50 8.11 -1.89 -0.02 1.49 16 29 H 0.06 1.59 8.24 -1.78 -0.01 1.58 16 30 H 0.04 1.55 5.83 -2.07 -0.01 1.54 16 31 H 0.08 3.27 4.65 -3.29 -0.02 3.26 16 32 H 0.02 0.91 8.25 -1.64 -0.01 0.89 16 33 H 0.05 2.61 6.06 -2.49 -0.02 2.60 16 34 H 0.02 1.15 7.07 -2.59 -0.02 1.13 16 Total: -1.00 -53.14 241.47 2.83 -50.31 By element: Atomic # 1 Polarization: 31.78 SS G_CDS: -0.23 Total: 31.54 kcal Atomic # 6 Polarization: -43.05 SS G_CDS: 1.68 Total: -41.37 kcal Atomic # 7 Polarization: -85.23 SS G_CDS: -0.64 Total: -85.87 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Total: -53.14 2.83 -50.31 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260441328.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.005 kcal (2) G-P(sol) polarization free energy of solvation -53.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds