Wall clock time and date at job start Mon Mar 30 2020 02:24:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47190 * 2 1 4 4 C 1.53004 * 109.47579 * 120.00306 * 2 1 3 5 5 H 1.09004 * 109.46679 * 57.82746 * 4 2 1 6 6 C 1.50693 * 109.46881 * 297.83004 * 4 2 1 7 7 H 1.08002 * 120.00013 * 275.46258 * 6 4 2 8 8 C 1.37881 * 120.00240 * 95.45821 * 6 4 2 9 9 N 1.31513 * 119.99519 * 10.42606 * 8 6 4 10 10 Si 1.86803 * 120.00114 * 190.42361 * 8 6 4 11 11 H 1.48500 * 109.47010 * 269.99910 * 10 8 6 12 12 H 1.48498 * 109.47006 * 30.00573 * 10 8 6 13 13 H 1.48501 * 109.46845 * 150.00030 * 10 8 6 14 14 C 1.53000 * 109.47279 * 177.82998 * 4 2 1 15 15 H 1.08997 * 112.95628 * 46.58990 * 14 4 2 16 16 C 1.53929 * 113.75836 * 178.23871 * 14 4 2 17 17 C 1.53935 * 86.33950 * 138.03629 * 16 14 4 18 18 N 1.47955 * 86.18088 * 336.27799 * 17 16 14 19 19 C 1.46901 * 110.99632 * 137.58506 * 18 17 16 20 20 H 1.08997 * 109.46895 * 306.01143 * 1 2 3 21 21 H 1.08994 * 109.47203 * 66.01496 * 1 2 3 22 22 H 1.09000 * 109.46772 * 186.02053 * 1 2 3 23 23 H 1.09002 * 109.47143 * 240.00476 * 2 1 3 24 24 H 1.09001 * 109.46737 * 305.20129 * 3 2 1 25 25 H 1.08994 * 109.46913 * 65.20345 * 3 2 1 26 26 H 1.09000 * 109.47024 * 185.20184 * 3 2 1 27 27 H 0.97008 * 119.99575 * 179.97438 * 9 8 6 28 28 H 1.08997 * 113.73084 * 252.39519 * 16 14 4 29 29 H 1.09007 * 113.73442 * 23.68042 * 16 14 4 30 30 H 1.09000 * 113.75686 * 90.59958 * 17 16 14 31 31 H 1.09005 * 113.75917 * 221.84839 * 17 16 14 32 32 H 1.08999 * 109.47404 * 324.75732 * 19 18 17 33 33 H 1.08994 * 109.47259 * 84.76346 * 19 18 17 34 34 H 1.09001 * 109.46940 * 204.75663 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 1.6453 -1.7372 1.2688 6 6 1.5822 0.0194 2.4790 7 1 2.1534 0.8585 2.8480 8 6 0.4341 -0.3740 3.1333 9 7 -0.1480 -1.5095 2.8146 10 14 -0.2945 0.7056 4.4724 11 1 0.2865 0.3258 5.7852 12 1 0.0181 2.1287 4.1856 13 1 -1.7674 0.5204 4.5108 14 6 3.5692 -0.7687 1.2221 15 1 4.0198 0.1910 0.9693 16 6 4.1908 -1.4389 2.4606 17 6 5.1587 -2.1263 1.4806 18 7 4.1166 -1.9081 0.4532 19 6 4.7109 -1.4532 -0.8109 20 1 -0.3633 0.6042 0.8313 21 1 -0.3633 0.4177 -0.9389 22 1 -0.3633 -1.0220 0.1078 23 1 1.8933 -0.5138 -0.8900 24 1 1.6026 1.9825 -0.8398 25 1 1.7548 1.9287 0.9329 26 1 3.1260 1.4439 -0.0932 27 1 -0.9556 -1.7865 3.2752 28 1 4.6778 -0.7393 3.1399 29 1 3.5184 -2.1294 2.9698 30 1 6.0756 -1.5646 1.3024 31 1 5.3410 -3.1768 1.7076 32 1 5.5653 -0.8102 -0.6001 33 1 5.0397 -2.3166 -1.3892 34 1 3.9683 -0.8954 -1.3814 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260494532.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:29 Heat of formation + Delta-G solvation = 17.082692 kcal Electronic energy + Delta-G solvation = -13515.818604 eV Core-core repulsion = 11449.209969 eV Total energy + Delta-G solvation = -2066.608635 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -39.22603 -35.34371 -31.89190 -29.95733 -27.82189 -26.00269 -24.65645 -23.32428 -22.19362 -18.98008 -18.29135 -16.13946 -15.06522 -14.76323 -14.24986 -13.90974 -13.47731 -12.93812 -12.52073 -12.21805 -11.81483 -11.28466 -11.19593 -10.94709 -10.83004 -10.70425 -10.60276 -10.40982 -10.01999 -9.87942 -9.82591 -9.09238 -8.89673 -8.65241 -8.25193 -7.94313 -5.93860 -3.91877 3.32804 3.41088 3.44083 4.45988 4.73986 5.37973 5.45091 5.52206 5.75635 5.85193 5.95703 6.12941 6.21348 6.25354 6.31959 6.37406 6.41643 6.63058 6.70708 6.83968 6.94308 7.02574 7.08222 7.12973 7.37863 7.49631 7.58065 7.74677 7.84489 7.98074 8.20161 8.57820 9.16848 9.67888 11.15170 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.035751 B = 0.013749 C = 0.011570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.998618 B = 2035.962843 C = 2419.404704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.082 4.082 3 C -0.135 4.135 4 C 0.059 3.941 5 H 0.070 0.930 6 C -0.499 4.499 7 H 0.049 0.951 8 C 0.072 3.928 9 N -0.884 5.884 10 Si 0.876 3.124 11 H -0.283 1.283 12 H -0.275 1.275 13 H -0.287 1.287 14 C 0.048 3.952 15 H 0.058 0.942 16 C -0.122 4.122 17 C -0.011 4.011 18 N -0.482 5.482 19 C -0.007 4.007 20 H 0.057 0.943 21 H 0.013 0.987 22 H 0.053 0.947 23 H 0.030 0.970 24 H 0.025 0.975 25 H 0.064 0.936 26 H 0.032 0.968 27 H 0.258 0.742 28 H 0.055 0.945 29 H 0.093 0.907 30 H 0.054 0.946 31 H 0.075 0.925 32 H 0.022 0.978 33 H 0.057 0.943 34 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.275 1.585 -3.469 7.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.101 4.101 3 C -0.192 4.192 4 C 0.040 3.960 5 H 0.089 0.911 6 C -0.538 4.538 7 H 0.068 0.932 8 C -0.130 4.130 9 N -0.522 5.522 10 Si 0.704 3.296 11 H -0.209 1.209 12 H -0.200 1.200 13 H -0.213 1.213 14 C -0.060 4.060 15 H 0.076 0.924 16 C -0.160 4.160 17 C -0.140 4.140 18 N -0.204 5.204 19 C -0.157 4.157 20 H 0.076 0.924 21 H 0.032 0.968 22 H 0.072 0.928 23 H 0.048 0.952 24 H 0.044 0.956 25 H 0.083 0.917 26 H 0.051 0.949 27 H 0.068 0.932 28 H 0.074 0.926 29 H 0.111 0.889 30 H 0.072 0.928 31 H 0.094 0.906 32 H 0.041 0.959 33 H 0.075 0.925 34 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 5.690 0.931 -3.652 6.825 hybrid contribution 0.191 1.334 0.789 1.562 sum 5.880 2.264 -2.863 6.921 Atomic orbital electron populations 1.21543 0.96007 1.01844 0.98139 1.21171 0.95603 0.94779 0.98560 1.21804 0.98521 0.98155 1.00729 1.18814 0.86524 0.98719 0.91960 0.91134 1.20833 1.08282 1.14212 1.10466 0.93228 1.24852 0.97389 0.94463 0.96254 1.69960 1.20042 1.19839 1.42323 0.86867 0.78573 0.81546 0.82655 1.20903 1.19983 1.21331 1.23787 1.00412 0.90948 0.90895 0.92446 1.23167 0.96911 0.99329 0.96580 1.23963 0.94268 1.00815 0.94997 1.68622 1.19523 1.31767 1.00529 1.22814 0.98270 0.99268 0.95308 0.92390 0.96804 0.92787 0.95154 0.95576 0.91655 0.94909 0.93156 0.92625 0.88855 0.92821 0.90608 0.95910 0.92462 0.91660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.68 8.38 37.16 0.31 -2.37 16 2 C -0.08 -1.82 2.73 -90.62 -0.25 -2.06 16 3 C -0.13 -2.70 8.64 37.16 0.32 -2.38 16 4 C 0.06 1.41 1.80 -91.77 -0.17 1.25 16 5 H 0.07 1.97 7.19 -51.93 -0.37 1.60 16 6 C -0.50 -12.88 5.71 -34.44 -0.20 -13.08 16 7 H 0.05 1.29 7.65 -52.49 -0.40 0.89 16 8 C 0.07 1.93 4.29 -17.82 -0.08 1.85 16 9 N -0.88 -24.68 12.55 55.43 0.70 -23.98 16 10 Si 0.88 20.83 29.55 -169.99 -5.02 15.80 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 13 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 14 C 0.05 1.00 2.56 -66.66 -0.17 0.83 16 15 H 0.06 1.19 6.09 -51.93 -0.32 0.87 16 16 C -0.12 -2.42 7.26 -25.80 -0.19 -2.60 16 17 C -0.01 -0.19 7.97 -2.77 -0.02 -0.22 16 18 N -0.48 -9.42 6.36 -238.98 -1.52 -10.94 16 19 C -0.01 -0.12 9.71 60.07 0.58 0.46 16 20 H 0.06 1.40 6.88 -51.93 -0.36 1.05 16 21 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 22 H 0.05 1.31 8.14 -51.93 -0.42 0.89 16 23 H 0.03 0.65 7.26 -51.93 -0.38 0.28 16 24 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.06 1.40 6.84 -51.93 -0.36 1.04 16 26 H 0.03 0.61 6.54 -51.93 -0.34 0.27 16 27 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 28 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 29 H 0.09 2.06 8.10 -51.93 -0.42 1.64 16 30 H 0.05 0.83 7.55 -51.93 -0.39 0.43 16 31 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.02 0.34 7.51 -51.93 -0.39 -0.05 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.06 1.10 7.26 -51.93 -0.38 0.72 16 LS Contribution 264.87 15.07 3.99 3.99 Total: -1.00 -26.86 264.87 -7.48 -34.34 By element: Atomic # 1 Polarization: 4.88 SS G_CDS: -5.77 Total: -0.89 kcal Atomic # 6 Polarization: -18.46 SS G_CDS: 0.15 Total: -18.31 kcal Atomic # 7 Polarization: -34.10 SS G_CDS: -0.82 Total: -34.92 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -26.86 -7.48 -34.34 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260494532.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.419 kcal (2) G-P(sol) polarization free energy of solvation -26.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.336 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds