Wall clock time and date at job start Mon Mar 30 2020 02:24:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47190 * 2 1 4 4 C 1.53004 * 109.47579 * 120.00306 * 2 1 3 5 5 H 1.09004 * 109.46679 * 57.82746 * 4 2 1 6 6 C 1.50693 * 109.46881 * 297.83004 * 4 2 1 7 7 H 1.08002 * 120.00013 * 275.46258 * 6 4 2 8 8 C 1.37881 * 120.00240 * 95.45821 * 6 4 2 9 9 N 1.31513 * 119.99519 * 10.42606 * 8 6 4 10 10 Si 1.86803 * 120.00114 * 190.42361 * 8 6 4 11 11 H 1.48500 * 109.47010 * 269.99910 * 10 8 6 12 12 H 1.48498 * 109.47006 * 30.00573 * 10 8 6 13 13 H 1.48501 * 109.46845 * 150.00030 * 10 8 6 14 14 C 1.53000 * 109.47279 * 177.82998 * 4 2 1 15 15 H 1.08997 * 112.95628 * 46.58990 * 14 4 2 16 16 C 1.53929 * 113.75836 * 178.23871 * 14 4 2 17 17 C 1.53935 * 86.33950 * 138.03629 * 16 14 4 18 18 N 1.47955 * 86.18088 * 336.27799 * 17 16 14 19 19 C 1.46901 * 110.99632 * 137.58506 * 18 17 16 20 20 H 1.08997 * 109.46895 * 306.01143 * 1 2 3 21 21 H 1.08994 * 109.47203 * 66.01496 * 1 2 3 22 22 H 1.09000 * 109.46772 * 186.02053 * 1 2 3 23 23 H 1.09002 * 109.47143 * 240.00476 * 2 1 3 24 24 H 1.09001 * 109.46737 * 305.20129 * 3 2 1 25 25 H 1.08994 * 109.46913 * 65.20345 * 3 2 1 26 26 H 1.09000 * 109.47024 * 185.20184 * 3 2 1 27 27 H 0.97008 * 119.99575 * 179.97438 * 9 8 6 28 28 H 1.08997 * 113.73084 * 252.39519 * 16 14 4 29 29 H 1.09007 * 113.73442 * 23.68042 * 16 14 4 30 30 H 1.09000 * 113.75686 * 90.59958 * 17 16 14 31 31 H 1.09005 * 113.75917 * 221.84839 * 17 16 14 32 32 H 1.08999 * 109.47404 * 324.75732 * 19 18 17 33 33 H 1.08994 * 109.47259 * 84.76346 * 19 18 17 34 34 H 1.09001 * 109.46940 * 204.75663 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 1.6453 -1.7372 1.2688 6 6 1.5822 0.0194 2.4790 7 1 2.1534 0.8585 2.8480 8 6 0.4341 -0.3740 3.1333 9 7 -0.1480 -1.5095 2.8146 10 14 -0.2945 0.7056 4.4724 11 1 0.2865 0.3258 5.7852 12 1 0.0181 2.1287 4.1856 13 1 -1.7674 0.5204 4.5108 14 6 3.5692 -0.7687 1.2221 15 1 4.0198 0.1910 0.9693 16 6 4.1908 -1.4389 2.4606 17 6 5.1587 -2.1263 1.4806 18 7 4.1166 -1.9081 0.4532 19 6 4.7109 -1.4532 -0.8109 20 1 -0.3633 0.6042 0.8313 21 1 -0.3633 0.4177 -0.9389 22 1 -0.3633 -1.0220 0.1078 23 1 1.8933 -0.5138 -0.8900 24 1 1.6026 1.9825 -0.8398 25 1 1.7548 1.9287 0.9329 26 1 3.1260 1.4439 -0.0932 27 1 -0.9556 -1.7865 3.2752 28 1 4.6778 -0.7393 3.1399 29 1 3.5184 -2.1294 2.9698 30 1 6.0756 -1.5646 1.3024 31 1 5.3410 -3.1768 1.7076 32 1 5.5653 -0.8102 -0.6001 33 1 5.0397 -2.3166 -1.3892 34 1 3.9683 -0.8954 -1.3814 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260494532.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:28 Heat of formation + Delta-G solvation = 0.093692 kcal Electronic energy + Delta-G solvation = -13516.555302 eV Core-core repulsion = 11449.209969 eV Total energy + Delta-G solvation = -2067.345333 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.77752 -37.13089 -33.88348 -31.44380 -29.57041 -27.73346 -26.51124 -24.76839 -23.89635 -20.68571 -20.00782 -18.07785 -16.62347 -16.56575 -15.93480 -15.48313 -15.16685 -14.62407 -14.08103 -13.90054 -13.47176 -13.14996 -12.84348 -12.76655 -12.54525 -12.34234 -12.26711 -12.05495 -11.75883 -11.68063 -11.47443 -10.92096 -10.70421 -10.48782 -10.26498 -9.43416 -7.98769 -6.00591 1.41953 1.46000 1.53276 2.49843 3.20657 3.38627 3.97150 4.07194 4.34074 4.45092 4.52724 4.54391 4.62239 4.70178 4.73305 4.91736 4.99350 5.02807 5.13309 5.17431 5.20615 5.31367 5.40490 5.51782 5.59678 5.72616 5.77383 5.87099 6.01584 6.10092 6.43183 6.63609 7.14119 7.61109 9.10174 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.035751 B = 0.013749 C = 0.011570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.998618 B = 2035.962843 C = 2419.404704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.083 4.083 3 C -0.125 4.125 4 C 0.061 3.939 5 H 0.023 0.977 6 C -0.495 4.495 7 H 0.048 0.952 8 C 0.028 3.972 9 N -0.916 5.916 10 Si 0.927 3.073 11 H -0.281 1.281 12 H -0.268 1.268 13 H -0.291 1.291 14 C 0.047 3.953 15 H 0.068 0.932 16 C -0.128 4.128 17 C 0.006 3.994 18 N -0.508 5.508 19 C -0.006 4.006 20 H 0.036 0.964 21 H 0.041 0.959 22 H 0.025 0.975 23 H 0.036 0.964 24 H 0.048 0.952 25 H 0.047 0.953 26 H 0.047 0.953 27 H 0.255 0.745 28 H 0.067 0.933 29 H 0.059 0.941 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.041 0.959 33 H 0.072 0.928 34 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.830 2.722 -4.196 9.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.102 4.102 3 C -0.182 4.182 4 C 0.042 3.958 5 H 0.041 0.959 6 C -0.534 4.534 7 H 0.066 0.934 8 C -0.171 4.171 9 N -0.556 5.556 10 Si 0.754 3.246 11 H -0.207 1.207 12 H -0.192 1.192 13 H -0.217 1.217 14 C -0.061 4.061 15 H 0.086 0.914 16 C -0.166 4.166 17 C -0.123 4.123 18 N -0.231 5.231 19 C -0.155 4.155 20 H 0.056 0.944 21 H 0.060 0.940 22 H 0.045 0.955 23 H 0.055 0.945 24 H 0.067 0.933 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.064 0.936 28 H 0.085 0.915 29 H 0.078 0.922 30 H 0.100 0.900 31 H 0.104 0.896 32 H 0.060 0.940 33 H 0.091 0.909 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 7.260 2.079 -4.381 8.731 hybrid contribution -0.263 0.947 0.974 1.384 sum 6.997 3.026 -3.406 8.350 Atomic orbital electron populations 1.21437 0.96698 0.99846 0.98694 1.21127 0.95018 0.96284 0.97726 1.21678 0.99548 0.96237 1.00773 1.18653 0.88857 0.95973 0.92306 0.95869 1.21045 1.07883 1.13713 1.10752 0.93426 1.25439 0.98002 0.95325 0.98294 1.70100 1.20414 1.21344 1.43721 0.86038 0.77588 0.80422 0.80514 1.20726 1.19217 1.21662 1.23609 0.98245 0.92019 0.92261 0.91437 1.23090 0.97408 0.99275 0.96804 1.23953 0.94168 1.01624 0.92505 1.68540 1.21254 1.31202 1.02135 1.22843 0.98539 1.00256 0.93887 0.94445 0.93978 0.95536 0.94530 0.93320 0.93355 0.93403 0.93592 0.91460 0.92219 0.89958 0.89599 0.94036 0.90882 0.92284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.96 8.38 71.98 0.60 -4.35 16 2 C -0.08 -3.59 2.73 -10.79 -0.03 -3.62 16 3 C -0.13 -4.72 8.64 71.98 0.62 -4.09 16 4 C 0.06 2.97 1.80 -11.54 -0.02 2.95 16 5 H 0.02 1.33 7.19 -2.38 -0.02 1.32 16 6 C -0.50 -25.73 5.71 25.60 0.15 -25.58 16 7 H 0.05 2.46 7.65 -2.91 -0.02 2.44 16 8 C 0.03 1.52 4.29 84.66 0.36 1.88 16 9 N -0.92 -52.85 12.55 21.45 0.27 -52.58 16 10 Si 0.93 43.12 29.55 68.60 2.03 45.15 16 11 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 12 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 13 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 14 C 0.05 1.92 2.56 45.02 0.12 2.04 16 15 H 0.07 2.62 6.09 -2.39 -0.01 2.60 16 16 C -0.13 -4.96 7.26 31.24 0.23 -4.74 16 17 C 0.01 0.19 7.97 86.41 0.69 0.88 16 18 N -0.51 -18.98 6.36 -910.01 -5.79 -24.77 16 19 C -0.01 -0.19 9.71 127.69 1.24 1.05 16 20 H 0.04 1.81 6.88 -2.39 -0.02 1.79 16 21 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 22 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 23 H 0.04 1.54 7.26 -2.39 -0.02 1.52 16 24 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 25 H 0.05 1.98 6.84 -2.39 -0.02 1.96 16 26 H 0.05 1.64 6.54 -2.39 -0.02 1.62 16 27 H 0.25 14.24 8.31 -92.70 -0.77 13.47 16 28 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 29 H 0.06 2.70 8.10 -2.38 -0.02 2.68 16 30 H 0.08 2.18 7.55 -2.39 -0.02 2.16 16 31 H 0.09 2.56 8.14 -2.38 -0.02 2.54 16 32 H 0.04 1.09 7.51 -2.39 -0.02 1.07 16 33 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.06 1.83 7.26 -2.39 -0.02 1.82 16 Total: -1.00 -57.93 264.87 1.51 -56.43 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: 1.04 Total: 9.36 kcal Atomic # 6 Polarization: -37.54 SS G_CDS: 3.95 Total: -33.59 kcal Atomic # 7 Polarization: -71.84 SS G_CDS: -5.52 Total: -77.35 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Total: -57.93 1.51 -56.43 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260494532.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.521 kcal (2) G-P(sol) polarization free energy of solvation -57.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.427 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds