Wall clock time and date at job start Mon Mar 30 2020 01:51:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99788 * 2 1 4 4 H 1.48499 * 109.46923 * 239.99547 * 3 2 1 5 5 H 1.48500 * 109.47477 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.46952 * 120.00193 * 3 2 1 7 7 C 1.37867 * 120.00111 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00317 * 175.20372 * 7 2 1 9 9 C 1.50703 * 120.00296 * 355.20542 * 7 2 1 10 10 H 1.09000 * 108.86749 * 35.21612 * 9 7 2 11 11 C 1.54240 * 108.89396 * 276.61487 * 9 7 2 12 12 C 1.50551 * 108.48223 * 159.17768 * 11 9 7 13 13 C 1.54064 * 112.42095 * 94.26256 * 12 11 9 14 14 C 1.54074 * 112.81317 * 318.27942 * 13 12 11 15 15 C 1.50469 * 112.49548 * 318.28254 * 14 13 12 16 16 H 1.09008 * 109.78653 * 334.34902 * 15 14 13 17 17 C 1.53002 * 109.62833 * 213.86601 * 15 14 13 18 18 N 1.46900 * 109.47060 * 65.96928 * 17 15 14 19 19 C 1.45535 * 108.89884 * 153.81552 * 9 7 2 20 20 H 0.96994 * 120.00076 * 185.22550 * 1 2 3 21 21 H 1.08999 * 109.62218 * 278.96736 * 11 9 7 22 22 H 1.08996 * 109.63305 * 39.54955 * 11 9 7 23 23 H 1.09001 * 108.92312 * 333.50521 * 12 11 9 24 24 H 1.09003 * 108.91769 * 215.01330 * 12 11 9 25 25 H 1.08994 * 108.81995 * 197.42086 * 13 12 11 26 26 H 1.09000 * 108.81219 * 79.13514 * 13 12 11 27 27 H 1.09001 * 108.87046 * 197.50412 * 14 13 12 28 28 H 1.08998 * 108.87536 * 79.05796 * 14 13 12 29 29 H 1.08997 * 109.47050 * 185.97254 * 17 15 14 30 30 H 1.08996 * 109.46955 * 305.96829 * 17 15 14 31 31 H 1.00901 * 110.99854 * 179.97438 * 18 17 15 32 32 H 1.00899 * 110.99945 * 303.95494 * 18 17 15 33 33 H 1.09001 * 108.89821 * 303.44811 * 19 9 7 34 34 H 1.09003 * 108.89528 * 62.03554 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0817 -1.1957 -0.0777 9 6 1.2550 -2.4968 0.1102 10 1 0.3082 -2.4046 -0.4218 11 6 0.9663 -2.7832 1.5980 12 6 -0.1792 -3.7564 1.6831 13 6 0.2978 -5.2173 1.7917 14 6 1.4825 -5.5299 0.8575 15 6 1.3208 -4.9106 -0.5043 16 1 0.2623 -4.7638 -0.7196 17 6 1.9381 -5.8273 -1.5623 18 7 1.1707 -7.0779 -1.6347 19 6 2.0449 -3.5488 -0.5123 20 1 -0.4850 -0.8365 0.0765 21 1 1.8510 -3.2147 2.0662 22 1 0.6962 -1.8561 2.1037 23 1 -0.7980 -3.6529 0.7918 24 1 -0.7825 -3.5165 2.5587 25 1 -0.5320 -5.8778 1.5401 26 1 0.6003 -5.4127 2.8205 27 1 1.5675 -6.6108 0.7456 28 1 2.3985 -5.1510 1.3107 29 1 1.9149 -5.3301 -2.5320 30 1 2.9705 -6.0496 -1.2927 31 1 1.5587 -7.7006 -2.3274 32 1 1.1229 -7.5255 -0.7317 33 1 2.2567 -3.2677 -1.5439 34 1 2.9872 -3.6485 0.0265 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260604173.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:34 Heat of formation + Delta-G solvation = -54.146995 kcal Electronic energy + Delta-G solvation = -13298.771288 eV Core-core repulsion = 11229.073902 eV Total energy + Delta-G solvation = -2069.697386 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.27142 -36.42276 -34.86827 -32.81462 -31.71827 -27.57473 -25.72473 -25.36860 -22.85466 -21.37963 -19.95968 -18.74836 -17.11863 -16.28786 -15.88111 -15.63693 -15.43890 -15.18098 -14.59810 -14.11733 -13.82834 -13.33523 -13.10959 -12.75982 -12.67466 -12.42940 -12.06611 -11.95516 -11.60993 -11.43079 -11.10325 -11.06262 -10.97567 -10.43225 -10.25067 -9.57182 -8.55778 -6.26384 1.51059 1.59075 1.78070 2.58364 3.23361 3.58985 3.85848 3.98403 4.01447 4.25173 4.33281 4.43544 4.53892 4.62090 4.71174 4.84444 4.85304 4.88677 5.02029 5.12247 5.27127 5.35848 5.39159 5.46897 5.50211 5.60423 5.70019 5.94687 6.19336 6.25622 6.31332 6.65784 6.73435 7.54390 8.83204 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.046592 B = 0.010176 C = 0.009060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.819826 B = 2750.918609 C = 3089.607641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.034 4.034 3 Si 1.109 2.891 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.609 4.609 8 H 0.040 0.960 9 C 0.025 3.975 10 H -0.005 1.005 11 C -0.092 4.092 12 C -0.114 4.114 13 C -0.104 4.104 14 C -0.103 4.103 15 C -0.080 4.080 16 H 0.054 0.946 17 C 0.074 3.926 18 N -0.855 5.855 19 C -0.077 4.077 20 H 0.258 0.742 21 H 0.052 0.948 22 H 0.016 0.984 23 H 0.035 0.965 24 H 0.050 0.950 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.077 0.923 28 H 0.052 0.948 29 H 0.059 0.941 30 H 0.035 0.965 31 H 0.350 0.650 32 H 0.346 0.654 33 H 0.031 0.969 34 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.794 -12.448 1.237 13.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.232 4.232 3 Si 0.931 3.069 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.647 4.647 8 H 0.059 0.941 9 C 0.007 3.993 10 H 0.013 0.987 11 C -0.130 4.130 12 C -0.152 4.152 13 C -0.142 4.142 14 C -0.141 4.141 15 C -0.099 4.099 16 H 0.073 0.927 17 C -0.057 4.057 18 N -0.388 5.388 19 C -0.115 4.115 20 H 0.069 0.931 21 H 0.070 0.930 22 H 0.035 0.965 23 H 0.054 0.946 24 H 0.069 0.931 25 H 0.086 0.914 26 H 0.087 0.913 27 H 0.095 0.905 28 H 0.070 0.930 29 H 0.077 0.923 30 H 0.053 0.947 31 H 0.164 0.836 32 H 0.161 0.839 33 H 0.050 0.950 34 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 2.997 -10.366 0.944 10.832 hybrid contribution 0.842 -1.625 0.271 1.850 sum 3.839 -11.991 1.215 12.649 Atomic orbital electron populations 1.70889 1.07773 1.30402 1.48784 1.27155 0.96665 1.06204 0.93138 0.83043 0.74220 0.71865 0.77738 1.19823 1.21093 1.19703 1.22490 0.94370 0.93742 1.54094 0.94142 1.17802 0.95070 0.93968 0.92499 0.98717 1.21279 0.97232 0.96112 0.98401 1.21349 0.97794 0.95906 1.00102 1.21815 0.98171 0.94528 0.99650 1.21316 0.98364 1.00229 0.94192 1.20899 0.99447 0.94094 0.95448 0.92742 1.21694 0.94554 0.91026 0.98387 1.58677 1.58859 1.07931 1.13304 1.20342 0.98214 0.94018 0.98931 0.93124 0.92974 0.96469 0.94579 0.93113 0.91366 0.91301 0.90503 0.92972 0.92258 0.94702 0.83620 0.83908 0.95025 0.93690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.07 13.62 21.44 0.29 -58.77 16 2 C -0.03 -1.99 5.43 84.65 0.46 -1.53 16 3 Si 1.11 51.65 29.91 68.60 2.05 53.70 16 4 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 5 H -0.29 -13.31 7.11 99.48 0.71 -12.61 16 6 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 7 C -0.61 -35.01 8.08 25.60 0.21 -34.80 16 8 H 0.04 2.30 7.80 -2.91 -0.02 2.28 16 9 C 0.03 1.29 1.35 -13.40 -0.02 1.27 16 10 H -0.01 -0.30 5.96 -2.39 -0.01 -0.32 16 11 C -0.09 -4.23 4.96 30.22 0.15 -4.08 16 12 C -0.11 -4.36 5.32 30.16 0.16 -4.20 16 13 C -0.10 -3.06 5.86 31.32 0.18 -2.88 16 14 C -0.10 -2.98 4.78 30.14 0.14 -2.83 16 15 C -0.08 -2.71 2.07 -11.19 -0.02 -2.73 16 16 H 0.05 2.10 7.00 -2.38 -0.02 2.08 16 17 C 0.07 2.07 6.12 86.30 0.53 2.60 16 18 N -0.85 -19.53 9.62 -186.72 -1.80 -21.33 16 19 C -0.08 -3.28 3.84 28.73 0.11 -3.17 16 20 H 0.26 16.42 6.64 -92.71 -0.62 15.80 16 21 H 0.05 2.23 6.97 -2.39 -0.02 2.22 16 22 H 0.02 0.87 7.95 -2.39 -0.02 0.85 16 23 H 0.04 1.50 6.64 -2.39 -0.02 1.49 16 24 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 25 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 26 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 27 H 0.08 1.74 5.96 -2.39 -0.01 1.72 16 28 H 0.05 1.58 6.62 -2.39 -0.02 1.56 16 29 H 0.06 1.78 8.04 -2.39 -0.02 1.76 16 30 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.35 6.28 9.08 -89.69 -0.81 5.47 16 32 H 0.35 6.84 7.08 -89.69 -0.63 6.21 16 33 H 0.03 1.41 7.86 -2.39 -0.02 1.39 16 34 H 0.04 1.87 7.46 -2.39 -0.02 1.85 16 Total: -1.00 -65.28 255.89 2.24 -63.05 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: -0.21 Total: 15.71 kcal Atomic # 6 Polarization: -54.26 SS G_CDS: 1.90 Total: -52.36 kcal Atomic # 7 Polarization: -78.60 SS G_CDS: -1.50 Total: -80.10 kcal Atomic # 14 Polarization: 51.65 SS G_CDS: 2.05 Total: 53.70 kcal Total: -65.28 2.24 -63.05 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260604173.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.902 kcal (2) G-P(sol) polarization free energy of solvation -65.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds