Wall clock time and date at job start Mon Mar 30 2020 01:53:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46894 * 111.00083 * 2 1 4 4 C 1.50700 * 109.46916 * 65.53918 * 3 2 1 5 5 H 1.08006 * 120.00309 * 234.90834 * 4 3 2 6 6 C 1.37876 * 120.00054 * 54.91702 * 4 3 2 7 7 N 1.31510 * 120.00541 * 201.34068 * 6 4 3 8 8 Si 1.86805 * 120.00019 * 21.33820 * 6 4 3 9 9 H 1.48501 * 109.46922 * 84.35882 * 8 6 4 10 10 H 1.48495 * 109.47123 * 204.36064 * 8 6 4 11 11 H 1.48500 * 109.47023 * 324.36244 * 8 6 4 12 12 C 1.53000 * 109.47346 * 185.54281 * 3 2 1 13 13 C 1.52997 * 109.47325 * 60.00039 * 12 3 2 14 14 C 1.52997 * 109.47066 * 60.00027 * 13 12 3 15 15 C 1.52997 * 109.47066 * 179.97438 * 14 13 12 16 16 C 1.53003 * 109.47521 * 300.00313 * 14 13 12 17 17 C 1.53001 * 109.47419 * 305.54347 * 3 2 1 18 18 H 1.08996 * 109.47471 * 66.75075 * 1 2 3 19 19 H 1.09001 * 109.46750 * 186.75412 * 1 2 3 20 20 H 1.09003 * 109.46353 * 306.74740 * 1 2 3 21 21 H 1.00893 * 111.00319 * 123.95981 * 2 1 3 22 22 H 0.96996 * 120.00876 * 179.97438 * 7 6 4 23 23 H 1.09002 * 109.46706 * 299.99818 * 12 3 2 24 24 H 1.09000 * 109.47268 * 180.02562 * 12 3 2 25 25 H 1.08999 * 109.46975 * 299.99944 * 13 12 3 26 26 H 1.08997 * 109.47433 * 180.02562 * 13 12 3 27 27 H 1.08999 * 109.47292 * 60.00111 * 14 13 12 28 28 H 1.09000 * 109.47275 * 60.00368 * 15 14 13 29 29 H 1.09002 * 109.47409 * 180.02562 * 15 14 13 30 30 H 1.08997 * 109.47433 * 300.00220 * 15 14 13 31 31 H 1.08993 * 109.47123 * 179.97438 * 16 14 13 32 32 H 1.08999 * 109.46672 * 300.00177 * 16 14 13 33 33 H 1.09001 * 109.47477 * 59.99650 * 17 3 2 34 34 H 1.09001 * 109.47584 * 180.02562 * 17 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6262 2.0511 1.2933 5 1 1.0945 2.9911 1.2768 6 6 1.9673 1.4732 2.4977 7 7 1.3177 1.8027 3.5927 8 14 3.3523 0.2220 2.5744 9 1 4.6526 0.9296 2.6925 10 1 3.1590 -0.6587 3.7542 11 1 3.3464 -0.5994 1.3372 12 6 3.5186 1.3330 -0.1393 13 6 3.8935 0.6429 -1.4524 14 6 3.2934 1.4195 -2.6261 15 6 3.6688 0.7298 -3.9391 16 6 1.7702 1.4580 -2.4868 17 6 1.3954 2.1481 -1.1737 18 1 -0.3634 0.4056 -0.9442 19 1 -0.3633 -1.0206 0.1209 20 1 -0.3632 0.6149 0.8235 21 1 1.8307 -0.5262 0.7812 22 1 1.5574 1.3959 4.4399 23 1 3.9461 0.7797 0.6969 24 1 3.9093 2.3506 -0.1389 25 1 3.5029 -0.3747 -1.4524 26 1 4.9786 0.6152 -1.5514 27 1 3.6840 2.4371 -2.6261 28 1 3.2785 -0.2880 -3.9395 29 1 3.2417 1.2833 -4.7754 30 1 4.7539 0.7028 -4.0382 31 1 1.3428 2.0116 -3.3228 32 1 1.3796 0.4404 -2.4868 33 1 0.3103 2.1755 -1.0745 34 1 1.7864 3.1656 -1.1740 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260737791.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:37 Heat of formation + Delta-G solvation = -1.920075 kcal Electronic energy + Delta-G solvation = -13812.986649 eV Core-core repulsion = 11745.553993 eV Total energy + Delta-G solvation = -2067.432656 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.71561 -34.66900 -32.03123 -30.48719 -29.87008 -26.74179 -23.86666 -23.36570 -21.90919 -19.92422 -18.31972 -16.49397 -15.41546 -14.84789 -14.00318 -13.62699 -13.29735 -13.00679 -12.68807 -12.58575 -12.19784 -11.78408 -11.52140 -10.99856 -10.93305 -10.77653 -10.64283 -10.31800 -10.20671 -9.90871 -9.83596 -9.60215 -9.19250 -8.51487 -8.41860 -7.03717 -6.21603 -4.13131 3.22334 3.32396 3.36412 4.31496 5.09813 5.34932 5.38430 5.49958 5.67459 5.93920 5.97178 6.17738 6.26028 6.28950 6.32313 6.37521 6.42700 6.44662 6.55808 6.64403 6.75550 6.80195 6.87542 7.05174 7.11366 7.17499 7.26899 7.40410 7.74518 8.13273 8.54763 8.67066 8.90279 9.47044 10.91917 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.043026 B = 0.015119 C = 0.013308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.606947 B = 1851.511547 C = 2103.501704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.690 5.690 3 C 0.208 3.792 4 C -0.543 4.543 5 H 0.070 0.930 6 C 0.076 3.924 7 N -0.882 5.882 8 Si 0.865 3.135 9 H -0.281 1.281 10 H -0.302 1.302 11 H -0.241 1.241 12 C -0.112 4.112 13 C -0.106 4.106 14 C -0.086 4.086 15 C -0.143 4.143 16 C -0.106 4.106 17 C -0.091 4.091 18 H 0.049 0.951 19 H 0.036 0.964 20 H 0.040 0.960 21 H 0.325 0.675 22 H 0.264 0.736 23 H 0.045 0.955 24 H 0.055 0.945 25 H 0.069 0.931 26 H 0.038 0.962 27 H 0.058 0.942 28 H 0.052 0.948 29 H 0.046 0.954 30 H 0.045 0.955 31 H 0.039 0.961 32 H 0.069 0.931 33 H 0.053 0.947 34 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.915 -3.007 -9.929 10.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.324 5.324 3 C 0.118 3.882 4 C -0.582 4.582 5 H 0.088 0.912 6 C -0.127 4.127 7 N -0.519 5.519 8 Si 0.696 3.304 9 H -0.208 1.208 10 H -0.230 1.230 11 H -0.167 1.167 12 C -0.150 4.150 13 C -0.144 4.144 14 C -0.104 4.104 15 C -0.201 4.201 16 C -0.143 4.143 17 C -0.129 4.129 18 H 0.067 0.933 19 H 0.055 0.945 20 H 0.059 0.941 21 H 0.145 0.855 22 H 0.073 0.927 23 H 0.063 0.937 24 H 0.074 0.926 25 H 0.087 0.913 26 H 0.057 0.943 27 H 0.076 0.924 28 H 0.071 0.929 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.058 0.942 32 H 0.088 0.912 33 H 0.072 0.928 34 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 2.931 -3.094 -10.415 11.253 hybrid contribution 0.633 -0.240 1.297 1.463 sum 3.564 -3.333 -9.118 10.342 Atomic orbital electron populations 1.21976 0.90202 0.98920 1.00601 1.61319 1.06671 1.16077 1.48373 1.18741 0.90074 0.85969 0.93396 1.21535 1.37750 1.09448 0.89428 0.91183 1.25001 0.95730 0.96210 0.95791 1.70038 1.37970 1.44053 0.99812 0.87494 0.83905 0.82308 0.76718 1.20770 1.22977 1.16732 1.22005 0.98308 0.99287 0.95383 1.21512 0.97673 1.00401 0.94809 1.21046 0.96516 0.98733 0.94123 1.21824 1.00299 1.00584 0.97351 1.21521 0.94603 1.01356 0.96862 1.21435 0.99829 0.97978 0.93685 0.93274 0.94521 0.94132 0.85461 0.92651 0.93715 0.92588 0.91272 0.94330 0.92354 0.92932 0.93514 0.93538 0.94218 0.91248 0.92793 0.93163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.69 9.71 60.07 0.58 1.27 16 2 N -0.69 -15.19 4.84 -108.37 -0.52 -15.71 16 3 C 0.21 4.74 0.27 -132.76 -0.04 4.70 16 4 C -0.54 -14.80 7.43 -34.44 -0.26 -15.06 16 5 H 0.07 2.11 7.99 -52.48 -0.42 1.69 16 6 C 0.08 2.14 5.31 -17.82 -0.09 2.05 16 7 N -0.88 -26.42 13.96 55.43 0.77 -25.64 16 8 Si 0.86 21.04 23.29 -169.99 -3.96 17.08 16 9 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 10 H -0.30 -7.46 7.11 56.52 0.40 -7.06 16 11 H -0.24 -5.46 4.69 56.52 0.27 -5.20 16 12 C -0.11 -2.42 4.14 -26.73 -0.11 -2.53 16 13 C -0.11 -1.95 5.05 -26.73 -0.13 -2.08 16 14 C -0.09 -1.40 2.72 -90.62 -0.25 -1.65 16 15 C -0.14 -1.95 9.19 37.16 0.34 -1.61 16 16 C -0.11 -1.83 4.96 -26.73 -0.13 -1.97 16 17 C -0.09 -1.86 4.15 -26.73 -0.11 -1.97 16 18 H 0.05 0.94 6.31 -51.93 -0.33 0.61 16 19 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 20 H 0.04 0.96 7.07 -51.93 -0.37 0.59 16 21 H 0.33 7.49 4.50 -39.30 -0.18 7.32 16 22 H 0.26 7.46 8.31 -40.82 -0.34 7.13 16 23 H 0.04 1.02 2.58 -51.93 -0.13 0.88 16 24 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 25 H 0.07 1.31 7.60 -51.93 -0.39 0.92 16 26 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.07 1.25 7.27 -51.93 -0.38 0.87 16 33 H 0.05 1.12 6.48 -51.93 -0.34 0.78 16 34 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 245.33 15.07 3.70 3.70 Total: -1.00 -28.37 245.33 -5.82 -34.19 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -5.61 Total: 5.23 kcal Atomic # 6 Polarization: -18.66 SS G_CDS: -0.20 Total: -18.85 kcal Atomic # 7 Polarization: -41.60 SS G_CDS: 0.25 Total: -41.35 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -3.96 Total: 17.08 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -28.37 -5.82 -34.19 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260737791.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.273 kcal (2) G-P(sol) polarization free energy of solvation -28.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds