Wall clock time and date at job start Mon Mar 30 2020 01:53:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46894 * 111.00083 * 2 1 4 4 C 1.50700 * 109.46916 * 65.53918 * 3 2 1 5 5 H 1.08006 * 120.00309 * 234.90834 * 4 3 2 6 6 C 1.37876 * 120.00054 * 54.91702 * 4 3 2 7 7 N 1.31510 * 120.00541 * 201.34068 * 6 4 3 8 8 Si 1.86805 * 120.00019 * 21.33820 * 6 4 3 9 9 H 1.48501 * 109.46922 * 84.35882 * 8 6 4 10 10 H 1.48495 * 109.47123 * 204.36064 * 8 6 4 11 11 H 1.48500 * 109.47023 * 324.36244 * 8 6 4 12 12 C 1.53000 * 109.47346 * 185.54281 * 3 2 1 13 13 C 1.52997 * 109.47325 * 60.00039 * 12 3 2 14 14 C 1.52997 * 109.47066 * 60.00027 * 13 12 3 15 15 C 1.52997 * 109.47066 * 179.97438 * 14 13 12 16 16 C 1.53003 * 109.47521 * 300.00313 * 14 13 12 17 17 C 1.53001 * 109.47419 * 305.54347 * 3 2 1 18 18 H 1.08996 * 109.47471 * 66.75075 * 1 2 3 19 19 H 1.09001 * 109.46750 * 186.75412 * 1 2 3 20 20 H 1.09003 * 109.46353 * 306.74740 * 1 2 3 21 21 H 1.00893 * 111.00319 * 123.95981 * 2 1 3 22 22 H 0.96996 * 120.00876 * 179.97438 * 7 6 4 23 23 H 1.09002 * 109.46706 * 299.99818 * 12 3 2 24 24 H 1.09000 * 109.47268 * 180.02562 * 12 3 2 25 25 H 1.08999 * 109.46975 * 299.99944 * 13 12 3 26 26 H 1.08997 * 109.47433 * 180.02562 * 13 12 3 27 27 H 1.08999 * 109.47292 * 60.00111 * 14 13 12 28 28 H 1.09000 * 109.47275 * 60.00368 * 15 14 13 29 29 H 1.09002 * 109.47409 * 180.02562 * 15 14 13 30 30 H 1.08997 * 109.47433 * 300.00220 * 15 14 13 31 31 H 1.08993 * 109.47123 * 179.97438 * 16 14 13 32 32 H 1.08999 * 109.46672 * 300.00177 * 16 14 13 33 33 H 1.09001 * 109.47477 * 59.99650 * 17 3 2 34 34 H 1.09001 * 109.47584 * 180.02562 * 17 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6262 2.0511 1.2933 5 1 1.0945 2.9911 1.2768 6 6 1.9673 1.4732 2.4977 7 7 1.3177 1.8027 3.5927 8 14 3.3523 0.2220 2.5744 9 1 4.6526 0.9296 2.6925 10 1 3.1590 -0.6587 3.7542 11 1 3.3464 -0.5994 1.3372 12 6 3.5186 1.3330 -0.1393 13 6 3.8935 0.6429 -1.4524 14 6 3.2934 1.4195 -2.6261 15 6 3.6688 0.7298 -3.9391 16 6 1.7702 1.4580 -2.4868 17 6 1.3954 2.1481 -1.1737 18 1 -0.3634 0.4056 -0.9442 19 1 -0.3633 -1.0206 0.1209 20 1 -0.3632 0.6149 0.8235 21 1 1.8307 -0.5262 0.7812 22 1 1.5574 1.3959 4.4399 23 1 3.9461 0.7797 0.6969 24 1 3.9093 2.3506 -0.1389 25 1 3.5029 -0.3747 -1.4524 26 1 4.9786 0.6152 -1.5514 27 1 3.6840 2.4371 -2.6261 28 1 3.2785 -0.2880 -3.9395 29 1 3.2417 1.2833 -4.7754 30 1 4.7539 0.7028 -4.0382 31 1 1.3428 2.0116 -3.3228 32 1 1.3796 0.4404 -2.4868 33 1 0.3103 2.1755 -1.0745 34 1 1.7864 3.1656 -1.1740 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260737791.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:36 Heat of formation + Delta-G solvation = -20.827360 kcal Electronic energy + Delta-G solvation = -13813.806530 eV Core-core repulsion = 11745.553993 eV Total energy + Delta-G solvation = -2068.252538 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.35739 -36.25184 -34.12489 -32.09825 -31.41490 -28.42438 -25.70828 -24.97122 -23.47944 -21.44919 -19.94592 -18.54811 -17.32478 -16.45465 -15.66159 -15.36080 -14.78873 -14.64629 -14.49649 -14.26795 -13.72551 -13.31479 -12.93985 -12.79520 -12.50506 -12.46269 -12.35910 -11.93849 -11.84297 -11.59409 -11.37324 -11.19266 -10.91727 -10.46748 -10.21579 -8.92390 -8.40628 -6.35260 1.27444 1.32047 1.41418 2.24447 2.94974 3.77866 4.01779 4.07873 4.22254 4.52327 4.61012 4.69200 4.71180 4.81061 4.88448 4.93981 4.98092 5.09507 5.12246 5.16687 5.26374 5.29609 5.33391 5.52022 5.54726 5.57927 5.65939 5.78043 5.84542 6.07405 6.61773 6.68994 6.79135 7.28140 8.76982 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.043026 B = 0.015119 C = 0.013308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.606947 B = 1851.511547 C = 2103.501704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.678 5.678 3 C 0.206 3.794 4 C -0.544 4.544 5 H 0.022 0.978 6 C 0.023 3.977 7 N -0.933 5.933 8 Si 0.927 3.073 9 H -0.280 1.280 10 H -0.306 1.306 11 H -0.211 1.211 12 C -0.116 4.116 13 C -0.101 4.101 14 C -0.086 4.086 15 C -0.136 4.136 16 C -0.097 4.097 17 C -0.091 4.091 18 H 0.066 0.934 19 H 0.062 0.938 20 H 0.001 0.999 21 H 0.319 0.681 22 H 0.264 0.736 23 H 0.034 0.966 24 H 0.049 0.951 25 H 0.066 0.934 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.054 0.946 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.042 0.958 34 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.284 -4.585 -12.398 13.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.311 5.311 3 C 0.116 3.884 4 C -0.584 4.584 5 H 0.041 0.959 6 C -0.176 4.176 7 N -0.572 5.572 8 Si 0.756 3.244 9 H -0.207 1.207 10 H -0.235 1.235 11 H -0.135 1.135 12 C -0.153 4.153 13 C -0.138 4.138 14 C -0.104 4.104 15 C -0.194 4.194 16 C -0.135 4.135 17 C -0.129 4.129 18 H 0.084 0.916 19 H 0.081 0.919 20 H 0.019 0.981 21 H 0.138 0.862 22 H 0.073 0.927 23 H 0.052 0.948 24 H 0.068 0.932 25 H 0.085 0.915 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.060 0.940 34 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 4.300 -4.673 -12.920 14.396 hybrid contribution 0.103 0.364 2.084 2.118 sum 4.403 -4.309 -10.836 12.465 Atomic orbital electron populations 1.21992 0.89459 0.99902 0.99927 1.61364 1.07246 1.15012 1.47474 1.18763 0.91585 0.86185 0.91890 1.21846 1.36633 1.07868 0.92018 0.95942 1.25782 0.97805 0.98758 0.95263 1.70176 1.39971 1.46425 1.00581 0.86480 0.80162 0.80145 0.77607 1.20690 1.23489 1.13497 1.21971 0.96703 0.99389 0.97285 1.21478 0.99170 0.99867 0.93328 1.21052 0.95365 0.98982 0.95026 1.21745 1.01325 1.00462 0.95822 1.21456 0.95754 1.00937 0.95313 1.21393 0.98907 0.97700 0.94869 0.91559 0.91885 0.98063 0.86199 0.92695 0.94789 0.93231 0.91503 0.92241 0.92267 0.92701 0.92036 0.92241 0.91990 0.91435 0.93967 0.93961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.50 9.71 127.69 1.24 2.74 16 2 N -0.68 -28.68 4.84 -496.76 -2.40 -31.08 16 3 C 0.21 9.26 0.27 2.78 0.00 9.26 16 4 C -0.54 -30.65 7.43 25.60 0.19 -30.46 16 5 H 0.02 1.43 7.99 -2.91 -0.02 1.41 16 6 C 0.02 1.33 5.31 84.65 0.45 1.78 16 7 N -0.93 -58.00 13.96 21.45 0.30 -57.70 16 8 Si 0.93 43.68 23.29 68.60 1.60 45.28 16 9 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 10 H -0.31 -14.58 7.11 99.48 0.71 -13.88 16 11 H -0.21 -8.82 4.69 99.48 0.47 -8.36 16 12 C -0.12 -4.78 4.14 30.59 0.13 -4.66 16 13 C -0.10 -3.32 5.05 30.59 0.15 -3.17 16 14 C -0.09 -2.49 2.72 -10.79 -0.03 -2.51 16 15 C -0.14 -3.06 9.19 71.98 0.66 -2.39 16 16 C -0.10 -3.06 4.96 30.60 0.15 -2.91 16 17 C -0.09 -3.62 4.15 30.60 0.13 -3.49 16 18 H 0.07 2.43 6.31 -2.39 -0.02 2.41 16 19 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 20 H 0.00 0.03 7.07 -2.39 -0.02 0.02 16 21 H 0.32 14.04 4.50 -89.70 -0.40 13.64 16 22 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 23 H 0.03 1.47 2.58 -2.39 -0.01 1.46 16 24 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 25 H 0.07 2.25 7.60 -2.39 -0.02 2.24 16 26 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 27 H 0.06 1.72 8.14 -2.39 -0.02 1.71 16 28 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.07 2.18 7.27 -2.39 -0.02 2.16 16 33 H 0.04 1.74 6.48 -2.39 -0.02 1.73 16 34 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -62.56 245.33 2.99 -59.58 By element: Atomic # 1 Polarization: 19.33 SS G_CDS: 0.42 Total: 19.75 kcal Atomic # 6 Polarization: -38.89 SS G_CDS: 3.07 Total: -35.82 kcal Atomic # 7 Polarization: -86.68 SS G_CDS: -2.10 Total: -88.79 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 1.60 Total: 45.28 kcal Total: -62.56 2.99 -59.58 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260737791.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.751 kcal (2) G-P(sol) polarization free energy of solvation -62.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds