Wall clock time and date at job start Mon Mar 30 2020 01:52:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 110.01823 * 2 1 4 4 C 1.54265 * 110.03278 * 238.55424 * 2 1 3 5 5 C 1.54886 * 104.19619 * 264.32788 * 4 2 1 6 6 C 1.54965 * 102.77529 * 322.08109 * 5 4 2 7 7 C 1.53875 * 110.02935 * 121.38857 * 2 1 3 8 8 C 1.50705 * 110.03221 * 238.56671 * 7 2 1 9 9 H 1.08004 * 119.99800 * 357.83882 * 8 7 2 10 10 C 1.37874 * 119.99965 * 178.10516 * 8 7 2 11 11 N 1.31520 * 120.00232 * 6.06796 * 10 8 7 12 12 Si 1.86802 * 119.99970 * 186.06132 * 10 8 7 13 13 H 1.48501 * 109.47092 * 0.02562 * 12 10 8 14 14 H 1.48494 * 109.47078 * 120.00544 * 12 10 8 15 15 H 1.48503 * 109.46986 * 240.00325 * 12 10 8 16 16 C 1.53001 * 110.03643 * 359.95090 * 7 2 1 17 17 N 1.46900 * 109.46703 * 63.61572 * 16 7 2 18 18 H 1.09000 * 109.47794 * 291.59007 * 1 2 3 19 19 H 1.09004 * 109.47361 * 51.59023 * 1 2 3 20 20 H 1.09005 * 109.47291 * 171.58982 * 1 2 3 21 21 H 1.08994 * 109.47220 * 181.38913 * 3 2 1 22 22 H 1.09004 * 109.46772 * 301.38826 * 3 2 1 23 23 H 1.09007 * 109.47074 * 61.38684 * 3 2 1 24 24 H 1.08994 * 110.48650 * 23.00661 * 4 2 1 25 25 H 1.09004 * 110.48324 * 145.65060 * 4 2 1 26 26 H 1.08996 * 110.76115 * 80.37295 * 5 4 2 27 27 H 1.09007 * 110.75403 * 203.56295 * 5 4 2 28 28 H 1.08995 * 110.48086 * 279.23226 * 6 5 4 29 29 H 1.09007 * 110.53070 * 156.56865 * 6 5 4 30 30 H 0.96997 * 120.00192 * 179.97438 * 11 10 8 31 31 H 1.08992 * 109.47039 * 183.61547 * 16 7 2 32 32 H 1.09001 * 109.46685 * 303.62139 * 16 7 2 33 33 H 1.00901 * 111.00174 * 66.45810 * 17 16 7 34 34 H 1.00902 * 110.99717 * 190.41171 * 17 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0537 1.4376 0.0000 4 6 2.0584 -0.7561 -1.2365 5 6 2.3279 -2.1905 -0.7180 6 6 2.8871 -1.9409 0.7055 7 6 2.0570 -0.7530 1.2341 8 6 2.9275 0.1574 2.0615 9 1 3.1238 1.1660 1.7287 10 6 3.4778 -0.2990 3.2404 11 7 3.3429 -1.5614 3.5837 12 14 4.4151 0.8756 4.3499 13 1 4.4234 2.2305 3.7420 14 1 3.7554 0.9339 5.6790 15 1 5.8114 0.3964 4.5110 16 6 0.8860 -1.2648 2.0755 17 7 0.1142 -2.2425 1.2967 18 1 -0.3635 0.3781 0.9555 19 1 -0.3634 0.6385 -0.8053 20 1 -0.3634 -1.0166 -0.1503 21 1 3.1433 1.4273 -0.0249 22 1 1.6751 1.9622 -0.8773 23 1 1.7156 1.9475 0.9022 24 1 1.3061 -0.7706 -2.0250 25 1 2.9811 -0.3009 -1.5964 26 1 1.4030 -2.7655 -0.6738 27 1 3.0651 -2.6949 -1.3428 28 1 3.9437 -1.6776 0.6595 29 1 2.7390 -2.8193 1.3338 30 1 3.7303 -1.8826 4.4130 31 1 1.2682 -1.7401 2.9788 32 1 0.2425 -0.4287 2.3490 33 1 0.6574 -3.0744 1.1206 34 1 -0.7538 -2.4685 1.7588 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260743153.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:58 Heat of formation + Delta-G solvation = -16.278011 kcal Electronic energy + Delta-G solvation = -14011.153277 eV Core-core repulsion = 11943.098014 eV Total energy + Delta-G solvation = -2068.055263 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.53700 -34.79946 -34.06293 -32.73127 -30.07543 -27.88707 -25.96487 -25.22848 -23.31055 -20.91611 -19.20137 -17.66938 -16.81071 -16.62657 -15.58966 -15.07927 -14.74665 -14.11193 -14.02739 -13.86636 -13.41505 -13.22503 -13.02615 -12.78301 -12.41954 -12.20128 -11.92592 -11.57956 -11.31437 -11.17288 -11.00150 -10.78355 -10.59444 -10.35562 -10.20348 -8.90669 -7.95744 -6.03078 1.37921 1.42988 1.51250 2.48539 3.27697 4.12985 4.20552 4.27904 4.38440 4.79464 4.89379 4.94219 4.99586 5.10394 5.12745 5.16587 5.24275 5.28518 5.35202 5.43752 5.56888 5.63139 5.72466 5.74982 5.86310 5.93104 6.11387 6.18373 6.32638 6.48342 6.73341 6.91116 7.11761 7.61849 9.05085 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.038298 B = 0.015464 C = 0.014117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.931929 B = 1810.184920 C = 1982.932824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.056 4.056 3 C -0.116 4.116 4 C -0.102 4.102 5 C -0.119 4.119 6 C -0.076 4.076 7 C 0.077 3.923 8 C -0.521 4.521 9 H 0.067 0.933 10 C 0.018 3.982 11 N -0.908 5.908 12 Si 0.932 3.068 13 H -0.271 1.271 14 H -0.287 1.287 15 H -0.289 1.289 16 C 0.080 3.920 17 N -0.830 5.830 18 H 0.027 0.973 19 H 0.029 0.971 20 H 0.101 0.899 21 H 0.037 0.963 22 H 0.043 0.957 23 H 0.037 0.963 24 H 0.067 0.933 25 H 0.045 0.955 26 H 0.078 0.922 27 H 0.051 0.949 28 H 0.013 0.987 29 H 0.030 0.970 30 H 0.251 0.749 31 H 0.026 0.974 32 H 0.034 0.966 33 H 0.331 0.669 34 H 0.329 0.671 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.481 -0.169 -5.967 7.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.056 4.056 3 C -0.173 4.173 4 C -0.139 4.139 5 C -0.156 4.156 6 C -0.115 4.115 7 C 0.077 3.923 8 C -0.559 4.559 9 H 0.085 0.915 10 C -0.180 4.180 11 N -0.548 5.548 12 Si 0.760 3.240 13 H -0.195 1.195 14 H -0.213 1.213 15 H -0.216 1.216 16 C -0.050 4.050 17 N -0.359 5.359 18 H 0.046 0.954 19 H 0.048 0.952 20 H 0.119 0.881 21 H 0.056 0.944 22 H 0.062 0.938 23 H 0.056 0.944 24 H 0.085 0.915 25 H 0.064 0.936 26 H 0.097 0.903 27 H 0.069 0.931 28 H 0.032 0.968 29 H 0.049 0.951 30 H 0.061 0.939 31 H 0.044 0.956 32 H 0.052 0.948 33 H 0.144 0.856 34 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -4.441 0.293 -6.374 7.774 hybrid contribution 1.038 0.000 2.054 2.302 sum -3.403 0.293 -4.320 5.507 Atomic orbital electron populations 1.22171 0.94374 1.03832 0.98336 1.21057 0.95593 0.93952 0.94994 1.21814 0.99538 0.96914 0.99030 1.22311 0.99282 0.95547 0.96782 1.22579 1.00313 0.96780 0.95958 1.22038 0.97063 0.98127 0.94235 1.18723 0.90906 0.91671 0.91019 1.22097 1.28522 0.99789 1.05537 0.91466 1.25571 0.97285 0.95904 0.99249 1.70065 1.46651 1.14441 1.23643 0.85902 0.78385 0.80289 0.79409 1.19524 1.21306 1.21572 1.21689 0.93980 0.93572 0.95759 1.59320 1.08425 1.16428 1.51716 0.95398 0.95245 0.88085 0.94398 0.93788 0.94402 0.91478 0.93611 0.90343 0.93060 0.96787 0.95104 0.93938 0.95590 0.94776 0.85614 0.85944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.71 7.06 71.98 0.51 -4.20 16 2 C -0.06 -2.24 0.90 -51.46 -0.05 -2.28 16 3 C -0.12 -4.63 6.86 71.98 0.49 -4.14 16 4 C -0.10 -3.66 5.89 31.67 0.19 -3.47 16 5 C -0.12 -4.35 6.47 31.91 0.21 -4.14 16 6 C -0.08 -3.50 4.42 31.70 0.14 -3.36 16 7 C 0.08 3.59 0.51 -52.20 -0.03 3.56 16 8 C -0.52 -27.47 6.97 25.60 0.18 -27.29 16 9 H 0.07 3.54 4.67 -2.91 -0.01 3.53 16 10 C 0.02 0.98 5.14 84.65 0.43 1.41 16 11 N -0.91 -50.52 10.41 21.45 0.22 -50.30 16 12 Si 0.93 43.70 29.54 68.60 2.03 45.73 16 13 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 14 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 15 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 16 C 0.08 3.60 4.79 86.30 0.41 4.02 16 17 N -0.83 -29.22 5.47 -186.72 -1.02 -30.24 16 18 H 0.03 1.06 6.20 -2.39 -0.01 1.05 16 19 H 0.03 0.95 8.14 -2.38 -0.02 0.93 16 20 H 0.10 3.53 5.69 -2.38 -0.01 3.52 16 21 H 0.04 1.59 7.04 -2.39 -0.02 1.57 16 22 H 0.04 1.50 8.14 -2.38 -0.02 1.49 16 23 H 0.04 1.59 7.15 -2.38 -0.02 1.57 16 24 H 0.07 2.11 7.84 -2.39 -0.02 2.09 16 25 H 0.05 1.65 7.84 -2.39 -0.02 1.63 16 26 H 0.08 2.66 6.39 -2.39 -0.02 2.64 16 27 H 0.05 1.72 8.14 -2.38 -0.02 1.70 16 28 H 0.01 0.69 7.85 -2.39 -0.02 0.67 16 29 H 0.03 1.49 7.04 -2.38 -0.02 1.47 16 30 H 0.25 13.64 8.31 -92.71 -0.77 12.87 16 31 H 0.03 1.35 5.98 -2.39 -0.01 1.33 16 32 H 0.03 1.57 6.34 -2.39 -0.02 1.55 16 33 H 0.33 11.64 6.60 -89.69 -0.59 11.04 16 34 H 0.33 10.05 9.08 -89.69 -0.81 9.24 16 Total: -1.00 -55.44 244.17 3.41 -52.04 By element: Atomic # 1 Polarization: 22.98 SS G_CDS: -0.31 Total: 22.67 kcal Atomic # 6 Polarization: -42.39 SS G_CDS: 2.49 Total: -39.90 kcal Atomic # 7 Polarization: -79.74 SS G_CDS: -0.80 Total: -80.54 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Total: -55.44 3.41 -52.04 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260743153.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.758 kcal (2) G-P(sol) polarization free energy of solvation -55.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds