Wall clock time and date at job start Mon Mar 30 2020 02:27:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.46716 * 2 1 4 4 C 1.53002 * 109.46767 * 119.99651 * 2 1 3 5 5 N 1.46900 * 109.46851 * 175.00048 * 4 2 1 6 6 C 1.46905 * 110.99699 * 180.02562 * 5 4 2 7 7 H 1.08997 * 109.47174 * 325.00164 * 6 5 4 8 8 C 1.50699 * 109.47026 * 204.99779 * 6 5 4 9 9 H 1.07997 * 120.00385 * 275.03275 * 8 6 5 10 10 C 1.37879 * 119.99346 * 95.02691 * 8 6 5 11 11 N 1.31515 * 119.99709 * 185.12818 * 10 8 6 12 12 Si 1.86801 * 120.00328 * 4.85712 * 10 8 6 13 13 H 1.48504 * 109.46824 * 84.68164 * 12 10 8 14 14 H 1.48500 * 109.47197 * 204.68104 * 12 10 8 15 15 H 1.48497 * 109.46898 * 324.68595 * 12 10 8 16 16 C 1.53000 * 109.46891 * 85.00337 * 6 5 4 17 17 C 1.52996 * 117.50006 * 244.28240 * 16 6 5 18 18 C 1.53000 * 117.49973 * 175.62268 * 16 6 5 19 19 H 1.08993 * 109.47685 * 300.00188 * 1 2 3 20 20 H 1.09004 * 109.47147 * 60.00159 * 1 2 3 21 21 H 1.09004 * 109.47088 * 179.97438 * 1 2 3 22 22 H 1.08994 * 109.47176 * 239.99944 * 2 1 3 23 23 H 1.09005 * 109.46772 * 179.97438 * 3 2 1 24 24 H 1.08997 * 109.47470 * 299.99543 * 3 2 1 25 25 H 1.09005 * 109.46924 * 60.00124 * 3 2 1 26 26 H 1.09006 * 109.47130 * 55.00283 * 4 2 1 27 27 H 1.08999 * 109.47265 * 295.00433 * 4 2 1 28 28 H 1.00899 * 111.00085 * 56.04906 * 5 4 2 29 29 H 0.97006 * 120.00167 * 179.72575 * 11 10 8 30 30 H 1.08999 * 115.55109 * 29.95063 * 16 6 5 31 31 H 1.09006 * 117.49741 * 359.97438 * 17 16 6 32 32 H 1.08998 * 117.50560 * 145.01877 * 17 16 6 33 33 H 1.09001 * 117.49771 * 214.98493 * 18 16 6 34 34 H 1.09004 * 117.49534 * 359.97097 * 18 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5040 -0.8266 1.1905 6 6 4.0302 -1.5158 2.3764 7 1 3.4259 -1.2562 3.2455 8 6 5.4571 -1.0920 2.6118 9 1 6.2615 -1.5911 2.0920 10 6 5.7355 -0.0669 3.4909 11 7 6.9688 0.3708 3.6212 12 14 4.3598 0.7054 4.4911 13 1 4.1264 -0.1004 5.7166 14 1 4.7420 2.0885 4.8735 15 1 3.1174 0.7418 3.6786 16 6 3.9779 -3.0284 2.1522 17 6 3.0606 -3.8463 3.0634 18 6 4.5794 -3.9245 3.2367 19 1 -0.3634 0.5138 0.8899 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 1.8934 -0.5138 -0.8899 23 1 3.1300 1.4425 0.0005 24 1 1.6767 1.9563 -0.8900 25 1 1.6766 1.9563 0.8900 26 1 1.6054 -1.7198 1.2953 27 1 1.7515 -0.1583 2.1370 28 1 3.9280 0.0826 1.0825 29 1 7.1641 1.0946 4.2367 30 1 4.0792 -3.3540 1.1169 31 1 2.4946 -3.3069 3.8229 32 1 2.5586 -4.7103 2.6277 33 1 5.0762 -4.8398 2.9148 34 1 5.0128 -3.4364 4.1096 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260831773.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:41 Heat of formation + Delta-G solvation = 4.267268 kcal Electronic energy + Delta-G solvation = -13032.745506 eV Core-core repulsion = 10965.581153 eV Total energy + Delta-G solvation = -2067.164353 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -37.55995 -35.93174 -33.16081 -31.79965 -27.56183 -26.89265 -23.88622 -22.58101 -21.55171 -19.61182 -18.90835 -16.85735 -15.44365 -15.05568 -14.48228 -13.90056 -13.58399 -13.34964 -12.80170 -12.47585 -12.14720 -11.89958 -11.78089 -11.40509 -11.00771 -10.76690 -10.67352 -10.38192 -10.25442 -10.12306 -9.94985 -9.49507 -9.36122 -8.78572 -8.54416 -7.31820 -6.15340 -4.15403 3.19908 3.29048 3.30122 4.32229 4.73578 4.93115 5.25772 5.28895 5.36471 5.50283 5.79973 5.83289 5.85307 5.96216 6.02552 6.08448 6.19627 6.24824 6.27770 6.34001 6.45316 6.49375 6.66251 6.70875 6.74885 6.92327 7.01585 7.17255 7.56358 8.22677 8.49094 8.71720 8.97336 9.47713 10.97377 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.024848 B = 0.014572 C = 0.010786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.573288 B = 1921.050651 C = 2595.302652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.096 4.096 3 C -0.149 4.149 4 C 0.058 3.942 5 N -0.688 5.688 6 C 0.208 3.792 7 H 0.006 0.994 8 C -0.502 4.502 9 H 0.079 0.921 10 C 0.073 3.927 11 N -0.892 5.892 12 Si 0.869 3.131 13 H -0.276 1.276 14 H -0.288 1.288 15 H -0.267 1.267 16 C -0.104 4.104 17 C -0.209 4.209 18 C -0.168 4.168 19 H 0.049 0.951 20 H 0.050 0.950 21 H 0.052 0.948 22 H 0.075 0.925 23 H 0.063 0.937 24 H 0.048 0.952 25 H 0.047 0.953 26 H 0.061 0.939 27 H 0.015 0.985 28 H 0.339 0.661 29 H 0.264 0.736 30 H 0.094 0.906 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.467 -1.452 -3.622 11.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.115 4.115 3 C -0.206 4.206 4 C -0.071 4.071 5 N -0.321 5.321 6 C 0.101 3.899 7 H 0.024 0.976 8 C -0.541 4.541 9 H 0.097 0.903 10 C -0.130 4.130 11 N -0.529 5.529 12 Si 0.697 3.303 13 H -0.202 1.202 14 H -0.214 1.214 15 H -0.192 1.192 16 C -0.123 4.123 17 C -0.246 4.246 18 C -0.206 4.206 19 H 0.068 0.932 20 H 0.069 0.931 21 H 0.071 0.929 22 H 0.094 0.906 23 H 0.082 0.918 24 H 0.067 0.933 25 H 0.066 0.934 26 H 0.079 0.921 27 H 0.033 0.967 28 H 0.159 0.841 29 H 0.074 0.926 30 H 0.112 0.888 31 H 0.098 0.902 32 H 0.096 0.904 33 H 0.097 0.903 34 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -10.347 -1.878 -3.904 11.217 hybrid contribution -0.799 1.145 1.383 1.965 sum -11.146 -0.733 -2.521 11.451 Atomic orbital electron populations 1.21810 0.96030 1.01278 1.01071 1.21141 0.94489 0.96212 0.99615 1.21855 1.01930 0.96115 1.00733 1.22031 0.91572 0.98704 0.94836 1.61002 1.02012 1.25441 1.43683 1.19120 0.95200 0.88570 0.87020 0.97644 1.21009 0.90983 1.17423 1.24696 0.90276 1.25102 0.95156 0.96103 0.96610 1.69900 1.18776 1.27504 1.36766 0.86997 0.83136 0.78799 0.81377 1.20156 1.21428 1.19226 1.22261 1.00596 0.94653 0.94775 1.23030 0.93633 1.03158 1.04757 1.22758 0.93901 1.01080 1.02850 0.93202 0.93114 0.92923 0.90618 0.91838 0.93270 0.93421 0.92063 0.96720 0.84055 0.92551 0.88760 0.90196 0.90382 0.90277 0.88620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 9.19 37.16 0.34 -1.50 16 2 C -0.10 -1.47 3.13 -90.62 -0.28 -1.75 16 3 C -0.15 -2.23 8.96 37.16 0.33 -1.90 16 4 C 0.06 1.08 4.94 -3.82 -0.02 1.06 16 5 N -0.69 -14.77 6.30 -107.95 -0.68 -15.45 16 6 C 0.21 4.89 1.92 -68.86 -0.13 4.75 16 7 H 0.01 0.15 4.69 -51.93 -0.24 -0.10 16 8 C -0.50 -13.75 8.29 -34.44 -0.29 -14.04 16 9 H 0.08 2.40 8.06 -52.49 -0.42 1.97 16 10 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 11 N -0.89 -26.61 13.96 55.43 0.77 -25.83 16 12 Si 0.87 21.28 26.98 -169.99 -4.59 16.69 16 13 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 14 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 15 H -0.27 -6.33 6.25 56.52 0.35 -5.98 16 16 C -0.10 -2.18 5.27 -90.62 -0.48 -2.66 16 17 C -0.21 -3.81 10.18 -26.70 -0.27 -4.08 16 18 C -0.17 -3.32 9.79 -26.69 -0.26 -3.58 16 19 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 20 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 21 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 22 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 23 H 0.06 1.03 6.68 -51.93 -0.35 0.68 16 24 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.06 1.11 8.01 -51.93 -0.42 0.69 16 27 H 0.01 0.29 7.48 -51.93 -0.39 -0.10 16 28 H 0.34 7.60 6.60 -39.29 -0.26 7.34 16 29 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 30 H 0.09 1.97 8.14 -51.93 -0.42 1.55 16 31 H 0.08 1.47 8.03 -51.93 -0.42 1.05 16 32 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 34 H 0.10 2.05 8.03 -51.93 -0.42 1.63 16 LS Contribution 274.03 15.07 4.13 4.13 Total: -1.00 -28.28 274.03 -7.42 -35.69 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -5.90 Total: 6.50 kcal Atomic # 6 Polarization: -20.57 SS G_CDS: -1.15 Total: -21.72 kcal Atomic # 7 Polarization: -41.38 SS G_CDS: 0.09 Total: -41.29 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.59 Total: 16.69 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -28.28 -7.42 -35.69 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260831773.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.961 kcal (2) G-P(sol) polarization free energy of solvation -28.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.693 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds