Wall clock time and date at job start Mon Mar 30 2020 02:27:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.46716 * 2 1 4 4 C 1.53002 * 109.46767 * 119.99651 * 2 1 3 5 5 N 1.46900 * 109.46851 * 175.00048 * 4 2 1 6 6 C 1.46905 * 110.99699 * 180.02562 * 5 4 2 7 7 H 1.08997 * 109.47174 * 325.00164 * 6 5 4 8 8 C 1.50699 * 109.47026 * 204.99779 * 6 5 4 9 9 H 1.07997 * 120.00385 * 275.03275 * 8 6 5 10 10 C 1.37879 * 119.99346 * 95.02691 * 8 6 5 11 11 N 1.31515 * 119.99709 * 185.12818 * 10 8 6 12 12 Si 1.86801 * 120.00328 * 4.85712 * 10 8 6 13 13 H 1.48504 * 109.46824 * 84.68164 * 12 10 8 14 14 H 1.48500 * 109.47197 * 204.68104 * 12 10 8 15 15 H 1.48497 * 109.46898 * 324.68595 * 12 10 8 16 16 C 1.53000 * 109.46891 * 85.00337 * 6 5 4 17 17 C 1.52996 * 117.50006 * 244.28240 * 16 6 5 18 18 C 1.53000 * 117.49973 * 175.62268 * 16 6 5 19 19 H 1.08993 * 109.47685 * 300.00188 * 1 2 3 20 20 H 1.09004 * 109.47147 * 60.00159 * 1 2 3 21 21 H 1.09004 * 109.47088 * 179.97438 * 1 2 3 22 22 H 1.08994 * 109.47176 * 239.99944 * 2 1 3 23 23 H 1.09005 * 109.46772 * 179.97438 * 3 2 1 24 24 H 1.08997 * 109.47470 * 299.99543 * 3 2 1 25 25 H 1.09005 * 109.46924 * 60.00124 * 3 2 1 26 26 H 1.09006 * 109.47130 * 55.00283 * 4 2 1 27 27 H 1.08999 * 109.47265 * 295.00433 * 4 2 1 28 28 H 1.00899 * 111.00085 * 56.04906 * 5 4 2 29 29 H 0.97006 * 120.00167 * 179.72575 * 11 10 8 30 30 H 1.08999 * 115.55109 * 29.95063 * 16 6 5 31 31 H 1.09006 * 117.49741 * 359.97438 * 17 16 6 32 32 H 1.08998 * 117.50560 * 145.01877 * 17 16 6 33 33 H 1.09001 * 117.49771 * 214.98493 * 18 16 6 34 34 H 1.09004 * 117.49534 * 359.97097 * 18 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5040 -0.8266 1.1905 6 6 4.0302 -1.5158 2.3764 7 1 3.4259 -1.2562 3.2455 8 6 5.4571 -1.0920 2.6118 9 1 6.2615 -1.5911 2.0920 10 6 5.7355 -0.0669 3.4909 11 7 6.9688 0.3708 3.6212 12 14 4.3598 0.7054 4.4911 13 1 4.1264 -0.1004 5.7166 14 1 4.7420 2.0885 4.8735 15 1 3.1174 0.7418 3.6786 16 6 3.9779 -3.0284 2.1522 17 6 3.0606 -3.8463 3.0634 18 6 4.5794 -3.9245 3.2367 19 1 -0.3634 0.5138 0.8899 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 1.8934 -0.5138 -0.8899 23 1 3.1300 1.4425 0.0005 24 1 1.6767 1.9563 -0.8900 25 1 1.6766 1.9563 0.8900 26 1 1.6054 -1.7198 1.2953 27 1 1.7515 -0.1583 2.1370 28 1 3.9280 0.0826 1.0825 29 1 7.1641 1.0946 4.2367 30 1 4.0792 -3.3540 1.1169 31 1 2.4946 -3.3069 3.8229 32 1 2.5586 -4.7103 2.6277 33 1 5.0762 -4.8398 2.9148 34 1 5.0128 -3.4364 4.1096 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260831773.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:41 Heat of formation + Delta-G solvation = -13.414845 kcal Electronic energy + Delta-G solvation = -13033.512260 eV Core-core repulsion = 10965.581153 eV Total energy + Delta-G solvation = -2067.931107 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.19009 -37.32865 -35.01391 -33.63319 -29.37577 -28.02032 -25.59479 -24.28285 -23.07358 -20.93935 -20.65587 -18.95564 -17.10854 -16.62471 -16.12841 -15.47317 -15.18921 -14.77532 -14.60654 -14.08527 -13.59521 -13.42887 -13.10836 -12.89823 -12.75245 -12.28768 -12.14969 -11.90998 -11.79038 -11.61890 -11.53555 -11.37457 -10.99199 -10.82034 -10.37767 -9.05385 -8.33874 -6.37564 1.24296 1.26781 1.35252 2.25025 2.93813 3.16954 3.66060 4.04690 4.07540 4.20029 4.27686 4.29848 4.50104 4.66713 4.72174 4.79094 4.84493 4.87819 4.93032 5.02238 5.07781 5.12251 5.24478 5.27796 5.36437 5.43294 5.47369 5.53296 5.61223 6.22885 6.63803 6.67323 6.89697 7.28987 8.82706 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.024848 B = 0.014572 C = 0.010786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.573288 B = 1921.050651 C = 2595.302652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.092 4.092 3 C -0.149 4.149 4 C 0.060 3.940 5 N -0.690 5.690 6 C 0.214 3.786 7 H -0.001 1.001 8 C -0.500 4.500 9 H 0.035 0.965 10 C 0.021 3.979 11 N -0.939 5.939 12 Si 0.932 3.068 13 H -0.270 1.270 14 H -0.285 1.285 15 H -0.254 1.254 16 C -0.129 4.129 17 C -0.175 4.175 18 C -0.176 4.176 19 H 0.049 0.951 20 H 0.069 0.931 21 H 0.060 0.940 22 H 0.075 0.925 23 H 0.042 0.958 24 H 0.073 0.927 25 H 0.044 0.956 26 H 0.068 0.932 27 H 0.003 0.997 28 H 0.331 0.669 29 H 0.266 0.734 30 H 0.095 0.905 31 H 0.081 0.919 32 H 0.111 0.889 33 H 0.100 0.900 34 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.211 -1.848 -3.892 13.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.111 4.111 3 C -0.206 4.206 4 C -0.069 4.069 5 N -0.322 5.322 6 C 0.106 3.894 7 H 0.017 0.983 8 C -0.539 4.539 9 H 0.053 0.947 10 C -0.177 4.177 11 N -0.579 5.579 12 Si 0.757 3.243 13 H -0.196 1.196 14 H -0.212 1.212 15 H -0.179 1.179 16 C -0.148 4.148 17 C -0.212 4.212 18 C -0.214 4.214 19 H 0.069 0.931 20 H 0.088 0.912 21 H 0.079 0.921 22 H 0.093 0.907 23 H 0.062 0.938 24 H 0.092 0.908 25 H 0.063 0.937 26 H 0.087 0.913 27 H 0.021 0.979 28 H 0.150 0.850 29 H 0.075 0.925 30 H 0.113 0.887 31 H 0.100 0.900 32 H 0.129 0.871 33 H 0.118 0.882 34 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -13.111 -2.290 -4.186 13.952 hybrid contribution 0.104 1.217 1.400 1.858 sum -13.007 -1.073 -2.785 13.345 Atomic orbital electron populations 1.21760 0.93562 1.02194 1.02089 1.21117 0.96466 0.95766 0.97730 1.21857 1.00653 0.96314 1.01813 1.22122 0.89277 0.99459 0.96088 1.60919 1.04123 1.24855 1.42314 1.18982 0.92451 0.90508 0.87490 0.98349 1.21151 0.92222 1.16744 1.23826 0.94658 1.25833 0.97319 0.96770 0.97809 1.70039 1.21030 1.28663 1.38164 0.85981 0.80525 0.77856 0.79910 1.19561 1.21152 1.17866 1.22170 1.03911 0.93313 0.95439 1.23080 0.92473 1.02847 1.02816 1.22772 0.95810 1.01388 1.01410 0.93143 0.91169 0.92107 0.90687 0.93844 0.90846 0.93706 0.91337 0.97868 0.85012 0.92457 0.88713 0.90029 0.87064 0.88184 0.91067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.04 9.19 71.98 0.66 -2.38 16 2 C -0.09 -2.59 3.13 -10.79 -0.03 -2.63 16 3 C -0.15 -4.18 8.96 71.98 0.65 -3.53 16 4 C 0.06 2.10 4.94 86.30 0.43 2.53 16 5 N -0.69 -29.26 6.30 -495.43 -3.12 -32.38 16 6 C 0.21 9.98 1.92 44.17 0.08 10.06 16 7 H 0.00 -0.05 4.69 -2.39 -0.01 -0.06 16 8 C -0.50 -28.21 8.29 25.60 0.21 -27.99 16 9 H 0.04 2.25 8.06 -2.91 -0.02 2.22 16 10 C 0.02 1.23 5.47 84.65 0.46 1.69 16 11 N -0.94 -57.82 13.96 21.45 0.30 -57.52 16 12 Si 0.93 44.25 26.98 68.60 1.85 46.10 16 13 H -0.27 -12.52 7.11 99.48 0.71 -11.82 16 14 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 15 H -0.25 -11.42 6.25 99.48 0.62 -10.80 16 16 C -0.13 -5.30 5.27 -10.79 -0.06 -5.36 16 17 C -0.18 -5.87 10.18 30.62 0.31 -5.56 16 18 C -0.18 -6.76 9.79 30.62 0.30 -6.46 16 19 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 20 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 21 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 22 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 23 H 0.04 1.38 6.68 -2.38 -0.02 1.36 16 24 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 25 H 0.04 1.26 8.14 -2.38 -0.02 1.24 16 26 H 0.07 2.30 8.01 -2.38 -0.02 2.28 16 27 H 0.00 0.12 7.48 -2.39 -0.02 0.10 16 28 H 0.33 14.90 6.60 -89.69 -0.59 14.31 16 29 H 0.27 15.39 8.31 -92.70 -0.77 14.62 16 30 H 0.09 3.86 8.14 -2.39 -0.02 3.84 16 31 H 0.08 2.73 8.03 -2.38 -0.02 2.71 16 32 H 0.11 3.03 8.14 -2.39 -0.02 3.01 16 33 H 0.10 3.36 8.14 -2.39 -0.02 3.34 16 34 H 0.07 3.07 8.03 -2.38 -0.02 3.05 16 Total: -1.00 -61.71 274.03 2.42 -59.30 By element: Atomic # 1 Polarization: 23.75 SS G_CDS: 0.37 Total: 24.12 kcal Atomic # 6 Polarization: -42.63 SS G_CDS: 3.01 Total: -39.62 kcal Atomic # 7 Polarization: -87.08 SS G_CDS: -2.82 Total: -89.90 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 1.85 Total: 46.10 kcal Total: -61.71 2.42 -59.30 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260831773.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.884 kcal (2) G-P(sol) polarization free energy of solvation -61.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds