Wall clock time and date at job start Mon Mar 30 2020 01:53:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 110.54518 * 2 1 4 4 C 1.54968 * 110.47553 * 237.33343 * 2 1 3 5 5 C 1.54888 * 102.77757 * 279.23808 * 4 2 1 6 6 C 1.54260 * 104.19861 * 322.08159 * 5 4 2 7 7 C 1.50700 * 110.07262 * 142.91617 * 6 5 4 8 8 H 1.07997 * 119.99965 * 7.64455 * 7 6 5 9 9 C 1.37881 * 119.99971 * 187.64066 * 7 6 5 10 10 N 1.31515 * 119.99948 * 354.88251 * 9 7 6 11 11 Si 1.86803 * 119.99786 * 174.87821 * 9 7 6 12 12 H 1.48502 * 109.47364 * 0.02562 * 11 9 7 13 13 H 1.48497 * 109.46844 * 120.00476 * 11 9 7 14 14 H 1.48500 * 109.47056 * 240.00186 * 11 9 7 15 15 C 1.52999 * 110.03587 * 264.32739 * 6 5 4 16 16 N 1.46904 * 109.46806 * 291.73518 * 15 6 5 17 17 C 1.53879 * 106.59659 * 23.61321 * 6 5 4 18 18 H 1.09007 * 109.47048 * 297.39313 * 1 2 3 19 19 H 1.09005 * 109.46644 * 57.38334 * 1 2 3 20 20 H 1.08996 * 109.47443 * 177.38806 * 1 2 3 21 21 H 1.08996 * 109.47355 * 182.61439 * 3 2 1 22 22 H 1.09000 * 109.46810 * 302.61660 * 3 2 1 23 23 H 1.09005 * 109.46845 * 62.60752 * 3 2 1 24 24 H 1.08998 * 110.72089 * 160.92127 * 4 2 1 25 25 H 1.09007 * 110.92114 * 37.64813 * 4 2 1 26 26 H 1.08996 * 110.48364 * 203.40280 * 5 4 2 27 27 H 1.09005 * 110.59445 * 80.82372 * 5 4 2 28 28 H 0.96998 * 119.99784 * 179.97438 * 10 9 7 29 29 H 1.09000 * 109.46982 * 51.73006 * 15 6 5 30 30 H 1.08995 * 109.46970 * 171.73595 * 15 6 5 31 31 H 1.00906 * 110.99621 * 61.24476 * 16 15 6 32 32 H 1.00899 * 110.99649 * 185.19245 * 16 15 6 33 33 H 1.09005 * 110.03481 * 119.28547 * 17 6 5 34 34 H 1.08999 * 110.02652 * 240.66521 * 17 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0670 1.4327 0.0000 4 6 2.0721 -0.7836 -1.2221 5 6 1.9648 -2.2577 -0.7590 6 6 2.3466 -2.2137 0.7350 7 6 1.5042 -3.1914 1.5132 8 1 0.8539 -3.8782 0.9920 9 6 1.5638 -3.2090 2.8906 10 7 2.4280 -2.4441 3.5212 11 14 0.4170 -4.3193 3.8609 12 1 -0.4527 -5.0737 2.9229 13 1 1.2181 -5.2736 4.6687 14 1 -0.4259 -3.4935 4.7625 15 6 3.8298 -2.5475 0.9069 16 7 4.0569 -3.9583 0.5661 17 6 2.0698 -0.7789 1.2173 18 1 -0.3633 0.4729 0.9125 19 1 -0.3633 0.5540 -0.8657 20 1 -0.3634 -1.0265 -0.0468 21 1 3.1557 1.4126 -0.0469 22 1 1.6757 1.9672 -0.8656 23 1 1.7517 1.9388 0.9125 24 1 3.1096 -0.5162 -1.4224 25 1 1.4530 -0.6091 -2.1022 26 1 2.6642 -2.8835 -1.3132 27 1 0.9458 -2.6250 -0.8818 28 1 2.4697 -2.4562 4.4902 29 1 4.4235 -1.9143 0.2476 30 1 4.1242 -2.3717 1.9416 31 1 3.8105 -4.1422 -0.3949 32 1 5.0118 -4.2260 0.7521 33 1 1.3256 -0.7896 2.0137 34 1 2.9921 -0.3208 1.5746 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260930463.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:01 Heat of formation + Delta-G solvation = -22.511137 kcal Electronic energy + Delta-G solvation = -13672.752976 eV Core-core repulsion = 11604.427424 eV Total energy + Delta-G solvation = -2068.325552 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.48438 -34.17218 -31.88776 -30.20104 -27.77619 -26.65158 -24.97643 -23.46885 -22.28221 -18.22293 -17.81369 -15.88995 -14.97534 -14.51893 -13.84572 -13.50760 -13.34515 -13.05357 -12.30696 -12.15540 -11.79993 -11.50627 -11.36738 -10.99720 -10.79837 -10.61844 -10.34145 -10.21149 -9.70715 -9.62197 -9.47516 -9.20872 -8.87556 -8.57625 -8.14478 -7.28291 -5.77357 -3.75857 3.42360 3.50440 3.54278 4.62696 5.42263 5.55178 5.59475 5.66345 5.87729 6.07929 6.17773 6.27556 6.31675 6.38327 6.43490 6.59338 6.62636 6.70188 6.74480 6.91591 6.98603 7.07832 7.12161 7.28296 7.44469 7.56043 7.89586 7.96722 8.21592 8.44142 8.62223 8.76615 9.18328 9.84419 11.29858 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.033698 B = 0.014984 C = 0.012668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.720420 B = 1868.185455 C = 2209.814998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.079 4.079 3 C -0.133 4.133 4 C -0.114 4.114 5 C -0.111 4.111 6 C 0.075 3.925 7 C -0.465 4.465 8 H 0.049 0.951 9 C 0.066 3.934 10 N -0.893 5.893 11 Si 0.883 3.117 12 H -0.277 1.277 13 H -0.289 1.289 14 H -0.290 1.290 15 C 0.084 3.916 16 N -0.825 5.825 17 C -0.072 4.072 18 H 0.046 0.954 19 H 0.035 0.965 20 H 0.061 0.939 21 H 0.047 0.953 22 H 0.040 0.960 23 H 0.048 0.952 24 H 0.051 0.949 25 H 0.045 0.955 26 H 0.038 0.962 27 H 0.055 0.945 28 H 0.253 0.747 29 H -0.026 1.026 30 H 0.088 0.912 31 H 0.318 0.682 32 H 0.313 0.687 33 H 0.068 0.932 34 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.211 4.019 -6.390 7.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.079 4.079 3 C -0.190 4.190 4 C -0.151 4.151 5 C -0.149 4.149 6 C 0.074 3.926 7 C -0.504 4.504 8 H 0.067 0.933 9 C -0.134 4.134 10 N -0.533 5.533 11 Si 0.712 3.288 12 H -0.202 1.202 13 H -0.215 1.215 14 H -0.217 1.217 15 C -0.047 4.047 16 N -0.352 5.352 17 C -0.111 4.111 18 H 0.065 0.935 19 H 0.054 0.946 20 H 0.081 0.919 21 H 0.066 0.934 22 H 0.059 0.941 23 H 0.067 0.933 24 H 0.070 0.930 25 H 0.064 0.936 26 H 0.057 0.943 27 H 0.074 0.926 28 H 0.063 0.937 29 H -0.008 1.008 30 H 0.107 0.893 31 H 0.130 0.870 32 H 0.123 0.877 33 H 0.087 0.913 34 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -0.291 3.907 -5.629 6.858 hybrid contribution 0.185 -0.248 -0.037 0.311 sum -0.106 3.659 -5.666 6.746 Atomic orbital electron populations 1.21716 0.95244 1.01808 0.99651 1.21517 0.94958 0.93935 0.97502 1.21804 1.00180 0.96752 1.00265 1.22570 0.99007 0.97218 0.96341 1.22498 0.99968 0.93585 0.98836 1.18698 0.91683 0.92919 0.89282 1.20906 1.21900 1.17036 0.90531 0.93251 1.24782 0.95347 0.95472 0.97759 1.69919 1.35304 1.40435 1.07636 0.86692 0.81084 0.80849 0.80156 1.20176 1.21534 1.21654 1.21948 0.97688 0.85034 1.00026 1.58597 1.26287 1.23445 1.26891 1.22120 0.99398 0.94997 0.94579 0.93455 0.94587 0.91947 0.93354 0.94078 0.93305 0.93045 0.93611 0.94347 0.92582 0.93724 1.00785 0.89332 0.87044 0.87702 0.91310 0.94418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.28 8.41 37.16 0.31 -1.96 16 2 C -0.08 -1.49 0.90 -152.81 -0.14 -1.63 16 3 C -0.13 -2.19 8.47 37.16 0.31 -1.87 16 4 C -0.11 -2.08 5.81 -24.70 -0.14 -2.22 16 5 C -0.11 -2.29 5.41 -25.08 -0.14 -2.43 16 6 C 0.07 1.76 0.43 -154.54 -0.07 1.70 16 7 C -0.47 -12.46 7.26 -34.44 -0.25 -12.71 16 8 H 0.05 1.36 7.62 -52.49 -0.40 0.96 16 9 C 0.07 1.81 4.82 -17.82 -0.09 1.73 16 10 N -0.89 -25.03 10.48 55.43 0.58 -24.45 16 11 Si 0.88 21.87 29.54 -169.99 -5.02 16.85 16 12 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 13 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 14 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 15 C 0.08 1.95 5.22 -3.82 -0.02 1.93 16 16 N -0.83 -17.69 8.99 -10.37 -0.09 -17.78 16 17 C -0.07 -1.66 4.23 -25.61 -0.11 -1.77 16 18 H 0.05 0.83 8.14 -51.92 -0.42 0.41 16 19 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 20 H 0.06 1.20 7.34 -51.93 -0.38 0.82 16 21 H 0.05 0.78 8.12 -51.93 -0.42 0.36 16 22 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 23 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 24 H 0.05 0.91 8.04 -51.93 -0.42 0.50 16 25 H 0.05 0.75 8.06 -51.93 -0.42 0.34 16 26 H 0.04 0.75 6.45 -51.93 -0.33 0.41 16 27 H 0.06 1.19 7.23 -51.93 -0.38 0.81 16 28 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 29 H -0.03 -0.57 8.14 -51.93 -0.42 -0.99 16 30 H 0.09 2.34 6.61 -51.93 -0.34 2.00 16 31 H 0.32 6.23 7.48 -39.29 -0.29 5.94 16 32 H 0.31 5.93 9.08 -39.29 -0.36 5.57 16 33 H 0.07 1.77 6.56 -51.93 -0.34 1.43 16 34 H 0.04 0.89 7.37 -51.93 -0.38 0.51 16 LS Contribution 260.26 15.07 3.92 3.92 Total: -1.00 -27.78 260.26 -6.65 -34.42 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -5.71 Total: 6.29 kcal Atomic # 6 Polarization: -18.93 SS G_CDS: -0.32 Total: -19.25 kcal Atomic # 7 Polarization: -42.72 SS G_CDS: 0.49 Total: -42.23 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -27.78 -6.65 -34.42 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260930463.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.912 kcal (2) G-P(sol) polarization free energy of solvation -27.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds