Wall clock time and date at job start Mon Mar 30 2020 01:53:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 110.54518 * 2 1 4 4 C 1.54968 * 110.47553 * 237.33343 * 2 1 3 5 5 C 1.54888 * 102.77757 * 279.23808 * 4 2 1 6 6 C 1.54260 * 104.19861 * 322.08159 * 5 4 2 7 7 C 1.50700 * 110.07262 * 142.91617 * 6 5 4 8 8 H 1.07997 * 119.99965 * 7.64455 * 7 6 5 9 9 C 1.37881 * 119.99971 * 187.64066 * 7 6 5 10 10 N 1.31515 * 119.99948 * 354.88251 * 9 7 6 11 11 Si 1.86803 * 119.99786 * 174.87821 * 9 7 6 12 12 H 1.48502 * 109.47364 * 0.02562 * 11 9 7 13 13 H 1.48497 * 109.46844 * 120.00476 * 11 9 7 14 14 H 1.48500 * 109.47056 * 240.00186 * 11 9 7 15 15 C 1.52999 * 110.03587 * 264.32739 * 6 5 4 16 16 N 1.46904 * 109.46806 * 291.73518 * 15 6 5 17 17 C 1.53879 * 106.59659 * 23.61321 * 6 5 4 18 18 H 1.09007 * 109.47048 * 297.39313 * 1 2 3 19 19 H 1.09005 * 109.46644 * 57.38334 * 1 2 3 20 20 H 1.08996 * 109.47443 * 177.38806 * 1 2 3 21 21 H 1.08996 * 109.47355 * 182.61439 * 3 2 1 22 22 H 1.09000 * 109.46810 * 302.61660 * 3 2 1 23 23 H 1.09005 * 109.46845 * 62.60752 * 3 2 1 24 24 H 1.08998 * 110.72089 * 160.92127 * 4 2 1 25 25 H 1.09007 * 110.92114 * 37.64813 * 4 2 1 26 26 H 1.08996 * 110.48364 * 203.40280 * 5 4 2 27 27 H 1.09005 * 110.59445 * 80.82372 * 5 4 2 28 28 H 0.96998 * 119.99784 * 179.97438 * 10 9 7 29 29 H 1.09000 * 109.46982 * 51.73006 * 15 6 5 30 30 H 1.08995 * 109.46970 * 171.73595 * 15 6 5 31 31 H 1.00906 * 110.99621 * 61.24476 * 16 15 6 32 32 H 1.00899 * 110.99649 * 185.19245 * 16 15 6 33 33 H 1.09005 * 110.03481 * 119.28547 * 17 6 5 34 34 H 1.08999 * 110.02652 * 240.66521 * 17 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0670 1.4327 0.0000 4 6 2.0721 -0.7836 -1.2221 5 6 1.9648 -2.2577 -0.7590 6 6 2.3466 -2.2137 0.7350 7 6 1.5042 -3.1914 1.5132 8 1 0.8539 -3.8782 0.9920 9 6 1.5638 -3.2090 2.8906 10 7 2.4280 -2.4441 3.5212 11 14 0.4170 -4.3193 3.8609 12 1 -0.4527 -5.0737 2.9229 13 1 1.2181 -5.2736 4.6687 14 1 -0.4259 -3.4935 4.7625 15 6 3.8298 -2.5475 0.9069 16 7 4.0569 -3.9583 0.5661 17 6 2.0698 -0.7789 1.2173 18 1 -0.3633 0.4729 0.9125 19 1 -0.3633 0.5540 -0.8657 20 1 -0.3634 -1.0265 -0.0468 21 1 3.1557 1.4126 -0.0469 22 1 1.6757 1.9672 -0.8656 23 1 1.7517 1.9388 0.9125 24 1 3.1096 -0.5162 -1.4224 25 1 1.4530 -0.6091 -2.1022 26 1 2.6642 -2.8835 -1.3132 27 1 0.9458 -2.6250 -0.8818 28 1 2.4697 -2.4562 4.4902 29 1 4.4235 -1.9143 0.2476 30 1 4.1242 -2.3717 1.9416 31 1 3.8105 -4.1422 -0.3949 32 1 5.0118 -4.2260 0.7521 33 1 1.3256 -0.7896 2.0137 34 1 2.9921 -0.3208 1.5746 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260930463.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:00 Heat of formation + Delta-G solvation = -39.761183 kcal Electronic energy + Delta-G solvation = -13673.500994 eV Core-core repulsion = 11604.427424 eV Total energy + Delta-G solvation = -2069.073570 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.14940 -35.89494 -33.89677 -31.84034 -29.51875 -28.04340 -26.89482 -25.25711 -23.96707 -20.10394 -19.34228 -17.85363 -16.75539 -16.46863 -15.56257 -15.10117 -15.00430 -14.60386 -14.00198 -13.85873 -13.46569 -13.16445 -12.90207 -12.85534 -12.48713 -12.43551 -12.16825 -12.05803 -11.33636 -11.17278 -11.05985 -10.98186 -10.68936 -10.54362 -10.19266 -9.02822 -7.87061 -5.89753 1.41897 1.46013 1.53926 2.56570 3.42331 3.94653 4.08542 4.14915 4.27607 4.63246 4.71347 4.80746 4.83505 4.90799 4.95483 5.01101 5.06182 5.12199 5.23679 5.34953 5.39366 5.45484 5.48366 5.58949 5.72211 5.84639 5.91435 6.07558 6.26278 6.58098 6.82585 7.03567 7.13692 7.71953 9.17538 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.033698 B = 0.014984 C = 0.012668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.720420 B = 1868.185455 C = 2209.814998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.079 4.079 3 C -0.128 4.128 4 C -0.104 4.104 5 C -0.108 4.108 6 C 0.063 3.937 7 C -0.469 4.469 8 H 0.035 0.965 9 C 0.024 3.976 10 N -0.911 5.911 11 Si 0.929 3.071 12 H -0.275 1.275 13 H -0.292 1.292 14 H -0.288 1.288 15 C 0.093 3.907 16 N -0.836 5.836 17 C -0.065 4.065 18 H 0.041 0.959 19 H 0.067 0.933 20 H 0.042 0.958 21 H 0.048 0.952 22 H 0.068 0.932 23 H 0.045 0.955 24 H 0.060 0.940 25 H 0.072 0.928 26 H 0.049 0.951 27 H 0.046 0.954 28 H 0.249 0.751 29 H -0.011 1.011 30 H 0.053 0.947 31 H 0.331 0.669 32 H 0.328 0.672 33 H 0.031 0.969 34 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.006 4.614 -8.103 9.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.079 4.079 3 C -0.185 4.185 4 C -0.141 4.141 5 C -0.145 4.145 6 C 0.063 3.937 7 C -0.508 4.508 8 H 0.053 0.947 9 C -0.173 4.173 10 N -0.552 5.552 11 Si 0.758 3.242 12 H -0.199 1.199 13 H -0.219 1.219 14 H -0.215 1.215 15 C -0.038 4.038 16 N -0.365 5.365 17 C -0.104 4.104 18 H 0.060 0.940 19 H 0.086 0.914 20 H 0.061 0.939 21 H 0.067 0.933 22 H 0.087 0.913 23 H 0.064 0.936 24 H 0.078 0.922 25 H 0.091 0.909 26 H 0.067 0.933 27 H 0.065 0.935 28 H 0.058 0.942 29 H 0.006 0.994 30 H 0.071 0.929 31 H 0.144 0.856 32 H 0.139 0.861 33 H 0.050 0.950 34 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -0.509 4.494 -7.355 8.634 hybrid contribution 0.259 -0.469 0.504 0.735 sum -0.250 4.024 -6.851 7.949 Atomic orbital electron populations 1.21673 0.94533 1.01038 1.00854 1.21512 0.95583 0.95105 0.95708 1.21748 1.00263 0.95081 1.01445 1.22519 1.00094 0.94818 0.96711 1.22399 0.99566 0.95830 0.96754 1.18793 0.91396 0.92436 0.91090 1.21136 1.21765 1.17036 0.90850 0.94665 1.25316 0.96534 0.96724 0.98730 1.70041 1.36337 1.41521 1.07329 0.85960 0.79720 0.79473 0.79040 1.19928 1.21921 1.21486 1.21686 0.97598 0.86308 0.98224 1.58477 1.27670 1.22415 1.27952 1.21940 0.97532 0.95486 0.95404 0.94008 0.91435 0.93897 0.93271 0.91282 0.93603 0.92163 0.90925 0.93274 0.93519 0.94207 0.99360 0.92904 0.85637 0.86113 0.95050 0.96197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.19 8.41 71.98 0.61 -3.59 16 2 C -0.08 -2.83 0.90 -51.08 -0.05 -2.87 16 3 C -0.13 -3.86 8.47 71.98 0.61 -3.25 16 4 C -0.10 -3.45 5.81 31.91 0.19 -3.27 16 5 C -0.11 -4.25 5.41 31.67 0.17 -4.08 16 6 C 0.06 2.98 0.43 -52.20 -0.02 2.95 16 7 C -0.47 -25.33 7.26 25.60 0.19 -25.15 16 8 H 0.04 1.96 7.62 -2.91 -0.02 1.94 16 9 C 0.02 1.35 4.82 84.66 0.41 1.76 16 10 N -0.91 -52.26 10.48 21.45 0.22 -52.04 16 11 Si 0.93 45.40 29.54 68.60 2.03 47.43 16 12 H -0.27 -13.18 7.11 99.48 0.71 -12.47 16 13 H -0.29 -14.38 7.11 99.48 0.71 -13.68 16 14 H -0.29 -13.91 7.11 99.48 0.71 -13.21 16 15 C 0.09 4.29 5.22 86.30 0.45 4.74 16 16 N -0.84 -35.02 8.99 -186.72 -1.68 -36.70 16 17 C -0.06 -2.98 4.23 31.32 0.13 -2.85 16 18 H 0.04 1.43 8.14 -2.38 -0.02 1.41 16 19 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 20 H 0.04 1.60 7.34 -2.39 -0.02 1.58 16 21 H 0.05 1.46 8.12 -2.39 -0.02 1.44 16 22 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 23 H 0.04 1.39 8.14 -2.38 -0.02 1.37 16 24 H 0.06 1.91 8.04 -2.39 -0.02 1.89 16 25 H 0.07 2.06 8.06 -2.38 -0.02 2.04 16 26 H 0.05 1.80 6.45 -2.39 -0.02 1.79 16 27 H 0.05 1.91 7.23 -2.38 -0.02 1.89 16 28 H 0.25 13.97 8.31 -92.71 -0.77 13.20 16 29 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 30 H 0.05 2.83 6.61 -2.39 -0.02 2.82 16 31 H 0.33 12.40 7.48 -89.69 -0.67 11.73 16 32 H 0.33 12.04 9.08 -89.69 -0.81 11.23 16 33 H 0.03 1.64 6.56 -2.38 -0.02 1.62 16 34 H 0.02 0.94 7.37 -2.39 -0.02 0.92 16 Total: -1.00 -59.23 260.26 2.84 -56.39 By element: Atomic # 1 Polarization: 20.92 SS G_CDS: -0.41 Total: 20.51 kcal Atomic # 6 Polarization: -38.27 SS G_CDS: 2.68 Total: -35.59 kcal Atomic # 7 Polarization: -87.28 SS G_CDS: -1.45 Total: -88.74 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal Total: -59.23 2.84 -56.39 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260930463.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.632 kcal (2) G-P(sol) polarization free energy of solvation -59.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds