Wall clock time and date at job start Mon Mar 30 2020 02:22:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47177 * 2 1 4 4 C 1.53003 * 109.46915 * 120.00233 * 2 1 3 5 5 H 1.08999 * 109.46970 * 294.97917 * 4 2 1 6 6 C 1.52995 * 109.47491 * 174.97812 * 4 2 1 7 7 H 1.09002 * 109.46927 * 54.26791 * 6 4 2 8 8 N 1.46895 * 109.47464 * 174.26988 * 6 4 2 9 9 C 1.50701 * 109.46761 * 294.27134 * 6 4 2 10 10 H 1.08002 * 120.00503 * 354.81823 * 9 6 4 11 11 C 1.37884 * 120.00026 * 174.81282 * 9 6 4 12 12 N 1.31520 * 119.99677 * 0.02562 * 11 9 6 13 13 Si 1.86792 * 120.00019 * 180.02562 * 11 9 6 14 14 H 1.48497 * 109.47649 * 60.00105 * 13 11 9 15 15 H 1.48507 * 109.47069 * 180.02562 * 13 11 9 16 16 H 1.48497 * 109.47024 * 299.99741 * 13 11 9 17 17 C 1.53006 * 109.47382 * 54.97217 * 4 2 1 18 18 C 1.52995 * 117.50177 * 253.49929 * 17 4 2 19 19 C 1.53000 * 117.49995 * 184.83717 * 17 4 2 20 20 H 1.08996 * 109.47214 * 299.99999 * 1 2 3 21 21 H 1.08998 * 109.46695 * 60.00186 * 1 2 3 22 22 H 1.09000 * 109.46876 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.46857 * 239.99354 * 2 1 3 24 24 H 1.09001 * 109.47069 * 185.69146 * 3 2 1 25 25 H 1.08997 * 109.47047 * 305.69754 * 3 2 1 26 26 H 1.09007 * 109.47143 * 65.69823 * 3 2 1 27 27 H 1.00893 * 111.00087 * 307.65753 * 8 6 4 28 28 H 1.00901 * 110.99545 * 71.61169 * 8 6 4 29 29 H 0.97000 * 119.99647 * 179.97438 * 12 11 9 30 30 H 1.09001 * 115.54531 * 39.17160 * 17 4 2 31 31 H 1.08999 * 117.49812 * 0.02562 * 18 17 4 32 32 H 1.09001 * 117.49669 * 145.01862 * 18 17 4 33 33 H 1.08993 * 117.49776 * 214.98412 * 19 17 4 34 34 H 1.08997 * 117.49416 * 359.97438 * 19 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.7519 -0.1582 2.1369 6 6 3.5647 -0.8317 1.1878 7 1 3.9950 0.1588 1.0394 8 7 4.0657 -1.3996 2.4465 9 6 3.9577 -1.7270 0.0411 10 1 3.1971 -2.2393 -0.5294 11 6 5.2885 -1.8922 -0.2799 12 7 6.2148 -1.2688 0.4151 13 14 5.7755 -3.0014 -1.7017 14 1 5.1641 -2.4951 -2.9566 15 1 7.2542 -3.0095 -1.8392 16 1 5.2958 -4.3821 -1.4392 17 6 1.4294 -2.1228 1.3141 18 6 0.3335 -2.3686 2.3530 19 6 1.7280 -2.9668 2.5547 20 1 -0.3633 0.5138 0.8899 21 1 -0.3632 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8933 -0.5139 -0.8899 24 1 3.1253 1.4441 -0.1019 25 1 1.5958 1.9849 -0.8346 26 1 1.7624 1.9260 0.9367 27 1 3.7113 -0.8878 3.2405 28 1 3.8375 -2.3799 2.5170 29 1 7.1510 -1.3853 0.1895 30 1 1.3443 -2.6430 0.3600 31 1 0.0472 -1.5318 2.9901 32 1 -0.4724 -3.0508 2.0826 33 1 1.8389 -4.0423 2.4170 34 1 2.3598 -2.5238 3.3246 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260991924.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:23 Heat of formation + Delta-G solvation = -6.677593 kcal Electronic energy + Delta-G solvation = -13462.872761 eV Core-core repulsion = 11395.233803 eV Total energy + Delta-G solvation = -2067.638958 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.98467 -35.98026 -35.10145 -33.11679 -28.89716 -27.95606 -26.90439 -23.17090 -22.70959 -21.64838 -20.48324 -18.15009 -16.67798 -16.31271 -15.99406 -15.63360 -14.90089 -14.57502 -14.14965 -13.82631 -13.36088 -13.09333 -12.91693 -12.70235 -12.53942 -12.38792 -12.26453 -11.88358 -11.79781 -11.47515 -11.40935 -10.74430 -10.63746 -10.54479 -10.39703 -8.54028 -7.91632 -6.05923 1.43640 1.44128 1.50504 2.50680 3.13199 3.35093 3.87838 4.10495 4.21973 4.30695 4.40320 4.48618 4.68159 4.74495 4.85258 4.89169 4.97953 4.99774 5.10320 5.14334 5.21932 5.32133 5.35469 5.47155 5.50384 5.62755 5.74252 5.83101 5.94657 6.35194 6.84941 7.26958 7.45916 7.64626 9.14292 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.030925 B = 0.013652 C = 0.012145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.193573 B = 2050.447964 C = 2304.954691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.081 4.081 3 C -0.137 4.137 4 C -0.067 4.067 5 H 0.045 0.955 6 C 0.230 3.770 7 H 0.004 0.996 8 N -0.839 5.839 9 C -0.517 4.517 10 H 0.052 0.948 11 C 0.026 3.974 12 N -0.893 5.893 13 Si 0.935 3.065 14 H -0.274 1.274 15 H -0.293 1.293 16 H -0.275 1.275 17 C -0.123 4.123 18 C -0.169 4.169 19 C -0.195 4.195 20 H 0.055 0.945 21 H 0.055 0.945 22 H 0.055 0.945 23 H 0.052 0.948 24 H 0.032 0.968 25 H 0.061 0.939 26 H 0.052 0.948 27 H 0.304 0.696 28 H 0.330 0.670 29 H 0.250 0.750 30 H 0.083 0.917 31 H 0.094 0.906 32 H 0.101 0.899 33 H 0.089 0.911 34 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.434 0.189 1.398 11.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.100 4.100 3 C -0.194 4.194 4 C -0.088 4.088 5 H 0.064 0.936 6 C 0.121 3.879 7 H 0.021 0.979 8 N -0.370 5.370 9 C -0.556 4.556 10 H 0.070 0.930 11 C -0.175 4.175 12 N -0.531 5.531 13 Si 0.762 3.238 14 H -0.199 1.199 15 H -0.219 1.219 16 H -0.200 1.200 17 C -0.141 4.141 18 C -0.205 4.205 19 C -0.232 4.232 20 H 0.074 0.926 21 H 0.074 0.926 22 H 0.074 0.926 23 H 0.071 0.929 24 H 0.051 0.949 25 H 0.080 0.920 26 H 0.072 0.928 27 H 0.115 0.885 28 H 0.146 0.854 29 H 0.059 0.941 30 H 0.101 0.899 31 H 0.112 0.888 32 H 0.119 0.881 33 H 0.108 0.892 34 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -10.494 0.408 1.148 10.565 hybrid contribution -0.090 -0.777 -0.551 0.957 sum -10.585 -0.369 0.597 10.608 Atomic orbital electron populations 1.21774 0.94253 1.01653 1.01358 1.20938 0.95722 0.95462 0.97864 1.21750 1.00111 0.96308 1.01275 1.21465 0.97884 0.92893 0.96536 0.93629 1.18872 0.87235 0.94056 0.87785 0.97860 1.59164 1.68061 1.06347 1.03446 1.21231 0.91284 1.28601 1.14487 0.92993 1.25680 0.97361 0.96772 0.97734 1.70224 0.99805 1.43040 1.40063 0.86000 0.76617 0.80122 0.81035 1.19922 1.21857 1.20022 1.21943 1.01839 0.96914 0.93416 1.23054 0.91645 1.03164 1.02686 1.23073 0.99475 0.99358 1.01320 0.92641 0.92568 0.92600 0.92938 0.94908 0.91993 0.92844 0.88480 0.85431 0.94098 0.89885 0.88757 0.88051 0.89235 0.89131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.71 8.84 71.98 0.64 -3.07 16 2 C -0.08 -2.88 2.40 -10.79 -0.03 -2.90 16 3 C -0.14 -4.74 8.81 71.98 0.63 -4.10 16 4 C -0.07 -2.57 1.50 -10.79 -0.02 -2.58 16 5 H 0.05 1.68 7.92 -2.39 -0.02 1.66 16 6 C 0.23 11.14 2.27 44.17 0.10 11.24 16 7 H 0.00 0.20 6.44 -2.39 -0.02 0.18 16 8 N -0.84 -39.47 8.17 -171.81 -1.40 -40.87 16 9 C -0.52 -27.59 7.13 25.60 0.18 -27.41 16 10 H 0.05 2.73 6.21 -2.91 -0.02 2.71 16 11 C 0.03 1.46 5.41 84.66 0.46 1.92 16 12 N -0.89 -53.63 13.00 21.45 0.28 -53.36 16 13 Si 0.94 44.37 29.54 68.60 2.03 46.39 16 14 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 15 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 16 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 17 C -0.12 -4.28 2.65 -10.79 -0.03 -4.31 16 18 C -0.17 -4.63 9.93 30.62 0.30 -4.33 16 19 C -0.19 -6.28 8.44 30.62 0.26 -6.02 16 20 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 21 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 22 H 0.05 1.52 6.89 -2.39 -0.02 1.50 16 23 H 0.05 2.15 6.99 -2.39 -0.02 2.13 16 24 H 0.03 1.33 6.72 -2.39 -0.02 1.31 16 25 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 26 H 0.05 1.68 8.14 -2.38 -0.02 1.66 16 27 H 0.30 12.65 8.56 -89.70 -0.77 11.89 16 28 H 0.33 15.01 5.70 -89.69 -0.51 14.49 16 29 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 30 H 0.08 3.14 7.41 -2.39 -0.02 3.12 16 31 H 0.09 2.42 8.08 -2.39 -0.02 2.40 16 32 H 0.10 2.41 8.14 -2.39 -0.02 2.39 16 33 H 0.09 2.79 8.14 -2.39 -0.02 2.77 16 34 H 0.09 3.00 5.83 -2.39 -0.01 2.99 16 Total: -1.00 -60.18 263.33 3.21 -56.97 By element: Atomic # 1 Polarization: 32.64 SS G_CDS: -0.20 Total: 32.44 kcal Atomic # 6 Polarization: -44.08 SS G_CDS: 2.50 Total: -41.58 kcal Atomic # 7 Polarization: -93.10 SS G_CDS: -1.12 Total: -94.23 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.39 kcal Total: -60.18 3.21 -56.97 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260991924.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.293 kcal (2) G-P(sol) polarization free energy of solvation -60.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds