Wall clock time and date at job start Mon Mar 30 2020 02:22:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47231 * 2 1 4 4 C 1.52996 * 109.47195 * 119.99754 * 2 1 3 5 5 H 1.08997 * 109.47405 * 293.43450 * 4 2 1 6 6 C 1.53004 * 109.47401 * 173.43336 * 4 2 1 7 7 H 1.09005 * 109.46962 * 305.98128 * 6 4 2 8 8 N 1.46894 * 109.47123 * 185.98046 * 6 4 2 9 9 C 1.50700 * 109.46885 * 65.97617 * 6 4 2 10 10 H 1.08001 * 120.00006 * 5.73824 * 9 6 4 11 11 C 1.37876 * 120.00129 * 185.72865 * 9 6 4 12 12 N 1.31509 * 120.00055 * 0.02562 * 11 9 6 13 13 Si 1.86804 * 120.00042 * 180.02562 * 11 9 6 14 14 H 1.48499 * 109.46808 * 60.00335 * 13 11 9 15 15 H 1.48499 * 109.46843 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.47118 * 300.00077 * 13 11 9 17 17 C 1.53001 * 109.47027 * 53.43812 * 4 2 1 18 18 C 1.53003 * 117.49853 * 254.04610 * 17 4 2 19 19 C 1.52996 * 59.99919 * 252.51010 * 18 17 4 20 20 H 1.09000 * 109.46943 * 300.00422 * 1 2 3 21 21 H 1.09004 * 109.46754 * 60.00049 * 1 2 3 22 22 H 1.08997 * 109.47086 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47414 * 240.00188 * 2 1 3 24 24 H 1.09000 * 109.46957 * 76.01782 * 3 2 1 25 25 H 1.08997 * 109.47319 * 196.01997 * 3 2 1 26 26 H 1.09002 * 109.46746 * 316.01390 * 3 2 1 27 27 H 1.00896 * 111.00304 * 308.07257 * 8 6 4 28 28 H 1.00896 * 111.00312 * 72.03800 * 8 6 4 29 29 H 0.97000 * 120.00425 * 179.97438 * 12 11 9 30 30 H 1.09001 * 115.55316 * 39.74925 * 17 4 2 31 31 H 1.09004 * 117.49527 * 359.97438 * 18 17 4 32 32 H 1.08991 * 117.49860 * 145.01850 * 18 17 4 33 33 H 1.09005 * 117.49723 * 252.51298 * 19 18 17 34 34 H 1.09000 * 117.51952 * 107.48235 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.7758 -0.1440 2.1353 6 6 3.5611 -0.8656 1.1695 7 1 3.8314 -1.3496 0.2310 8 7 4.0351 -1.6814 2.2954 9 6 4.1992 0.4981 1.2335 10 1 3.5901 1.3713 1.4150 11 6 5.5606 0.6310 1.0605 12 7 6.3023 -0.4322 0.8392 13 14 6.3516 2.3214 1.1405 14 1 6.0990 2.9235 2.4742 15 1 7.8151 2.1938 0.9236 16 1 5.7695 3.1907 0.0866 17 6 1.3998 -2.1082 1.3344 18 6 0.3032 -2.3171 2.3807 19 6 1.6846 -2.9421 2.5852 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 1.8934 -0.5138 -0.8900 24 1 1.9270 1.8678 0.9972 25 1 3.0924 1.4559 -0.2836 26 1 1.4640 2.0315 -0.7137 27 1 3.6853 -1.3256 3.1723 28 1 3.7824 -2.6504 2.1716 29 1 7.2600 -0.3387 0.7171 30 1 1.3002 -2.6390 0.3876 31 1 0.0381 -1.4664 3.0086 32 1 -0.5182 -2.9852 2.1223 33 1 1.7720 -4.0215 2.4612 34 1 2.3284 -2.5027 3.3472 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260991926.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:28 Heat of formation + Delta-G solvation = 4.700153 kcal Electronic energy + Delta-G solvation = -13442.011695 eV Core-core repulsion = 11374.866113 eV Total energy + Delta-G solvation = -2067.145582 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 3.44 seconds Orbital eigenvalues (eV) -40.05126 -36.22454 -34.94935 -33.11958 -28.91424 -28.28539 -26.64533 -23.10312 -22.59121 -21.62953 -20.58899 -18.27600 -16.70927 -16.24316 -16.17040 -15.59122 -14.75126 -14.63433 -14.09587 -13.87941 -13.30164 -13.15411 -12.78716 -12.74287 -12.51050 -12.38459 -12.23260 -11.94850 -11.78044 -11.40011 -11.20138 -10.81906 -10.66518 -10.41007 -10.34336 -8.53761 -7.86443 -5.98143 1.45178 1.45866 1.51702 2.52803 3.05195 3.38426 3.82859 4.07174 4.17622 4.26510 4.40762 4.48898 4.68932 4.74026 4.82773 4.92680 5.00359 5.04757 5.09538 5.19642 5.23307 5.31203 5.33213 5.42037 5.53305 5.62106 5.83087 5.90153 5.97749 6.38957 6.86902 7.29620 7.43665 7.68822 9.18629 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.037968 B = 0.013033 C = 0.010420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.290211 B = 2147.844276 C = 2686.578056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.073 4.073 3 C -0.139 4.139 4 C -0.068 4.068 5 H 0.046 0.954 6 C 0.234 3.766 7 H -0.006 1.006 8 N -0.833 5.833 9 C -0.525 4.525 10 H 0.071 0.929 11 C 0.027 3.973 12 N -0.897 5.897 13 Si 0.932 3.068 14 H -0.276 1.276 15 H -0.295 1.295 16 H -0.270 1.270 17 C -0.151 4.151 18 C -0.164 4.164 19 C -0.194 4.194 20 H 0.050 0.950 21 H 0.055 0.945 22 H 0.059 0.941 23 H 0.045 0.955 24 H 0.041 0.959 25 H 0.060 0.940 26 H 0.045 0.955 27 H 0.316 0.684 28 H 0.315 0.685 29 H 0.248 0.752 30 H 0.093 0.907 31 H 0.089 0.911 32 H 0.106 0.894 33 H 0.101 0.899 34 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.613 -1.275 0.781 11.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.092 4.092 3 C -0.196 4.196 4 C -0.088 4.088 5 H 0.065 0.935 6 C 0.124 3.876 7 H 0.012 0.988 8 N -0.363 5.363 9 C -0.563 4.563 10 H 0.089 0.911 11 C -0.174 4.174 12 N -0.536 5.536 13 Si 0.759 3.241 14 H -0.202 1.202 15 H -0.221 1.221 16 H -0.196 1.196 17 C -0.169 4.169 18 C -0.201 4.201 19 C -0.231 4.231 20 H 0.069 0.931 21 H 0.074 0.926 22 H 0.078 0.922 23 H 0.063 0.937 24 H 0.060 0.940 25 H 0.079 0.921 26 H 0.064 0.936 27 H 0.129 0.871 28 H 0.130 0.870 29 H 0.057 0.943 30 H 0.111 0.889 31 H 0.107 0.893 32 H 0.124 0.876 33 H 0.119 0.881 34 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -10.681 -1.121 0.522 10.752 hybrid contribution 0.005 0.556 0.152 0.577 sum -10.676 -0.565 0.674 10.712 Atomic orbital electron populations 1.21795 0.94284 1.01717 1.01218 1.20834 0.95592 0.95957 0.96852 1.22142 1.01869 0.95641 0.99919 1.21475 0.97537 0.92682 0.97137 0.93533 1.18790 0.87427 0.92055 0.89295 0.98841 1.59077 1.68667 1.04336 1.04269 1.21759 0.92503 0.93723 1.48351 0.91095 1.25635 0.98404 0.98169 0.95227 1.70204 1.04753 1.29647 1.48973 0.86046 0.77196 0.82287 0.78527 1.20167 1.22085 1.19551 1.22264 1.03298 0.97486 0.93842 1.22988 0.91989 1.03011 1.02109 1.23227 0.99711 0.99519 1.00676 0.93073 0.92614 0.92179 0.93691 0.94022 0.92104 0.93601 0.87094 0.87042 0.94282 0.88878 0.89274 0.87574 0.88084 0.89123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.72 8.72 71.98 0.63 -3.09 16 2 C -0.07 -2.63 2.51 -10.79 -0.03 -2.65 16 3 C -0.14 -5.26 7.54 71.98 0.54 -4.71 16 4 C -0.07 -2.59 1.45 -10.79 -0.02 -2.61 16 5 H 0.05 1.86 7.83 -2.39 -0.02 1.84 16 6 C 0.23 11.36 2.15 44.17 0.09 11.45 16 7 H -0.01 -0.36 8.14 -2.38 -0.02 -0.38 16 8 N -0.83 -38.85 7.98 -171.80 -1.37 -40.22 16 9 C -0.52 -27.90 6.18 25.60 0.16 -27.74 16 10 H 0.07 3.64 4.81 -2.91 -0.01 3.62 16 11 C 0.03 1.49 5.42 84.66 0.46 1.95 16 12 N -0.90 -54.05 13.02 21.45 0.28 -53.77 16 13 Si 0.93 44.36 29.54 68.60 2.03 46.39 16 14 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 15 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 16 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 17 C -0.15 -4.80 3.47 -10.79 -0.04 -4.84 16 18 C -0.16 -4.22 9.89 30.59 0.30 -3.92 16 19 C -0.19 -5.61 7.92 30.59 0.24 -5.37 16 20 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 21 H 0.05 1.40 8.14 -2.38 -0.02 1.38 16 22 H 0.06 1.55 6.85 -2.39 -0.02 1.54 16 23 H 0.04 1.73 8.13 -2.39 -0.02 1.71 16 24 H 0.04 1.58 6.99 -2.39 -0.02 1.56 16 25 H 0.06 2.71 5.74 -2.39 -0.01 2.70 16 26 H 0.05 1.48 8.04 -2.39 -0.02 1.46 16 27 H 0.32 13.87 7.55 -89.70 -0.68 13.19 16 28 H 0.32 13.32 6.32 -89.70 -0.57 12.75 16 29 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 30 H 0.09 2.97 8.14 -2.39 -0.02 2.95 16 31 H 0.09 2.29 8.08 -2.38 -0.02 2.27 16 32 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16 33 H 0.10 2.61 8.14 -2.38 -0.02 2.59 16 34 H 0.09 2.83 5.64 -2.39 -0.01 2.82 16 Total: -1.00 -60.12 260.25 3.12 -57.00 By element: Atomic # 1 Polarization: 32.28 SS G_CDS: -0.16 Total: 32.12 kcal Atomic # 6 Polarization: -43.87 SS G_CDS: 2.35 Total: -41.52 kcal Atomic # 7 Polarization: -92.90 SS G_CDS: -1.09 Total: -93.99 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -60.12 3.12 -57.00 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260991926.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.705 kcal (2) G-P(sol) polarization free energy of solvation -60.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.005 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.44 seconds