Wall clock time and date at job start Mon Mar 30 2020 01:56:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47269 * 2 1 4 4 C 1.50694 * 109.50534 * 303.59078 * 3 2 1 5 5 H 1.08000 * 119.99949 * 116.67508 * 4 3 2 6 6 C 1.37875 * 120.00027 * 296.94591 * 4 3 2 7 7 N 1.31517 * 120.00155 * 6.58900 * 6 4 3 8 8 Si 1.86802 * 120.00371 * 186.58835 * 6 4 3 9 9 H 1.48498 * 109.46961 * 60.00021 * 8 6 4 10 10 H 1.48496 * 109.47231 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.46743 * 300.00109 * 8 6 4 12 12 C 1.53122 * 109.50286 * 63.67250 * 3 2 1 13 13 C 1.53117 * 109.16056 * 177.63389 * 12 3 2 14 14 C 1.53036 * 109.28071 * 302.34008 * 13 12 3 15 15 N 1.46847 * 109.52002 * 59.17941 * 14 13 12 16 16 C 1.46904 * 110.99979 * 174.16182 * 15 14 13 17 17 C 1.46847 * 111.20144 * 298.25801 * 15 14 13 18 18 H 1.09007 * 109.46565 * 295.26226 * 1 2 3 19 19 H 1.09000 * 109.46892 * 55.25926 * 1 2 3 20 20 H 1.08996 * 109.47443 * 175.26321 * 1 2 3 21 21 H 1.09004 * 109.46901 * 239.99924 * 2 1 3 22 22 H 1.09003 * 109.47422 * 120.00586 * 2 1 3 23 23 H 0.96998 * 120.00104 * 179.97438 * 7 6 4 24 24 H 1.09001 * 109.51915 * 297.53641 * 12 3 2 25 25 H 1.08999 * 109.52390 * 57.65876 * 12 3 2 26 26 H 1.09000 * 109.50244 * 62.28585 * 13 12 3 27 27 H 1.09003 * 109.49966 * 182.35923 * 13 12 3 28 28 H 1.08997 * 109.46621 * 179.19692 * 14 13 12 29 29 H 1.09001 * 109.46151 * 299.18201 * 14 13 12 30 30 H 1.08996 * 109.46767 * 63.95692 * 16 15 14 31 31 H 1.09001 * 109.46866 * 183.95491 * 16 15 14 32 32 H 1.08998 * 109.47104 * 303.95618 * 16 15 14 33 33 H 1.09001 * 109.46417 * 301.72809 * 17 15 14 34 34 H 1.08996 * 109.46658 * 181.75247 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 1.4669 2.1788 -1.1833 5 1 0.8102 3.0220 -1.0281 6 6 1.7763 1.7726 -2.4639 7 7 2.4641 0.6680 -2.6554 8 14 1.2188 2.7909 -3.9273 9 1 1.8011 4.1537 -3.8327 10 1 1.6747 2.1434 -5.1835 11 1 -0.2633 2.8849 -3.9290 12 6 1.6069 2.1378 1.2937 13 6 2.1711 3.5611 1.3123 14 6 3.6951 3.5023 1.1865 15 7 4.0584 2.8290 -0.0669 16 6 5.5098 2.8766 -0.2886 17 6 3.5680 1.4450 -0.0878 18 1 -0.3633 0.4386 0.9295 19 1 -0.3633 0.5856 -0.8445 20 1 -0.3634 -1.0241 -0.0849 21 1 1.8933 -0.5139 -0.8900 22 1 1.8934 -0.5139 0.8899 23 1 2.6815 0.3820 -3.5564 24 1 0.5186 2.1767 1.3394 25 1 1.9879 1.5826 2.1508 26 1 1.7585 4.1271 0.4771 27 1 1.9012 4.0472 2.2499 28 1 4.0988 4.5148 1.1851 29 1 4.1080 2.9478 2.0292 30 1 6.0161 2.3184 0.4989 31 1 5.7442 2.4333 -1.2564 32 1 5.8460 3.9133 -0.2729 33 1 3.9814 0.9004 0.7611 34 1 3.8792 0.9633 -1.0147 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261114872.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:52 Heat of formation + Delta-G solvation = -22.986760 kcal Electronic energy + Delta-G solvation = -13843.825024 eV Core-core repulsion = 11775.478848 eV Total energy + Delta-G solvation = -2068.346176 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.06555 -36.19829 -33.78656 -32.58876 -29.94563 -27.37057 -26.84091 -24.39851 -23.39808 -21.35689 -20.32895 -17.40405 -16.71354 -16.21175 -15.64498 -15.26239 -15.08409 -14.72173 -14.08743 -13.88179 -13.32544 -13.25879 -12.90354 -12.78016 -12.59027 -12.45976 -12.23115 -11.83345 -11.81625 -11.65096 -11.35032 -10.76952 -10.59780 -10.39040 -10.11350 -8.79132 -7.81042 -5.85641 1.47462 1.50325 1.55226 2.59561 3.40053 3.46918 4.25346 4.29770 4.39404 4.55490 4.67228 4.68568 4.78307 4.80813 4.89628 4.93873 5.03345 5.08512 5.10165 5.27021 5.30447 5.40538 5.46992 5.63356 5.73627 5.83480 5.88304 6.02740 6.36956 6.54522 6.63676 6.75834 7.12211 7.75404 9.19544 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.027576 B = 0.018442 C = 0.014565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.129213 B = 1517.878787 C = 1921.981366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.108 4.108 3 C 0.066 3.934 4 C -0.459 4.459 5 H 0.040 0.960 6 C 0.030 3.970 7 N -0.911 5.911 8 Si 0.926 3.074 9 H -0.283 1.283 10 H -0.295 1.295 11 H -0.280 1.280 12 C -0.104 4.104 13 C -0.105 4.105 14 C 0.064 3.936 15 N -0.543 5.543 16 C 0.034 3.966 17 C 0.083 3.917 18 H 0.046 0.954 19 H 0.042 0.958 20 H 0.037 0.963 21 H 0.061 0.939 22 H 0.020 0.980 23 H 0.250 0.750 24 H 0.051 0.949 25 H 0.038 0.962 26 H 0.055 0.945 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.021 0.979 30 H 0.019 0.981 31 H 0.049 0.951 32 H 0.075 0.925 33 H -0.017 1.017 34 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.499 2.925 6.349 7.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.146 4.146 3 C 0.065 3.935 4 C -0.498 4.498 5 H 0.058 0.942 6 C -0.167 4.167 7 N -0.552 5.552 8 Si 0.755 3.245 9 H -0.209 1.209 10 H -0.221 1.221 11 H -0.205 1.205 12 C -0.141 4.141 13 C -0.142 4.142 14 C -0.064 4.064 15 N -0.267 5.267 16 C -0.115 4.115 17 C -0.045 4.045 18 H 0.065 0.935 19 H 0.061 0.939 20 H 0.056 0.944 21 H 0.079 0.921 22 H 0.039 0.961 23 H 0.060 0.940 24 H 0.070 0.930 25 H 0.057 0.943 26 H 0.073 0.927 27 H 0.091 0.909 28 H 0.094 0.906 29 H 0.039 0.961 30 H 0.037 0.963 31 H 0.068 0.932 32 H 0.094 0.906 33 H 0.001 0.999 34 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.344 3.083 5.810 6.713 hybrid contribution 0.267 -0.118 -0.521 0.597 sum 1.611 2.965 5.289 6.273 Atomic orbital electron populations 1.21498 0.96491 0.99135 1.00626 1.21447 0.95691 0.98573 0.98927 1.18261 0.90626 0.92154 0.92449 1.20867 1.26105 1.12242 0.90547 0.94211 1.25221 0.96021 0.95392 1.00035 1.69888 1.42003 1.22757 1.20585 0.86131 0.78188 0.79643 0.80535 1.20918 1.22078 1.20536 1.21616 0.99483 0.95914 0.97116 1.21462 0.94695 0.97267 1.00808 1.22026 0.96624 0.98331 0.89444 1.61741 1.12227 1.17944 1.34822 1.22270 0.87958 1.01508 0.99748 1.21994 0.98027 0.86486 0.98013 0.93511 0.93864 0.94413 0.92053 0.96125 0.94019 0.93012 0.94302 0.92673 0.90909 0.90568 0.96134 0.96291 0.93248 0.90593 0.99911 0.91067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.03 9.32 71.98 0.67 -4.36 16 2 C -0.11 -4.99 4.76 30.59 0.15 -4.84 16 3 C 0.07 3.07 0.28 -52.88 -0.01 3.06 16 4 C -0.46 -23.80 5.35 25.60 0.14 -23.66 16 5 H 0.04 2.11 7.00 -2.91 -0.02 2.09 16 6 C 0.03 1.63 5.12 84.65 0.43 2.06 16 7 N -0.91 -50.38 9.45 21.45 0.20 -50.18 16 8 Si 0.93 44.20 29.54 68.60 2.03 46.22 16 9 H -0.28 -13.60 7.11 99.48 0.71 -12.90 16 10 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 11 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 12 C -0.10 -4.17 4.41 30.67 0.14 -4.04 16 13 C -0.10 -3.83 5.83 30.65 0.18 -3.66 16 14 C 0.06 2.29 5.46 86.33 0.47 2.76 16 15 N -0.54 -23.13 4.52 -922.58 -4.17 -27.29 16 16 C 0.03 1.20 9.59 127.69 1.22 2.43 16 17 C 0.08 3.89 3.95 86.33 0.34 4.24 16 18 H 0.05 1.76 6.83 -2.38 -0.02 1.74 16 19 H 0.04 1.99 6.94 -2.39 -0.02 1.97 16 20 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 21 H 0.06 3.21 6.18 -2.39 -0.01 3.19 16 22 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 23 H 0.25 13.65 8.31 -92.71 -0.77 12.88 16 24 H 0.05 2.04 6.77 -2.39 -0.02 2.03 16 25 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 26 H 0.05 2.26 6.89 -2.39 -0.02 2.24 16 27 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 28 H 0.08 2.40 8.09 -2.39 -0.02 2.38 16 29 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.02 0.62 8.14 -2.39 -0.02 0.61 16 31 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.08 2.33 8.10 -2.39 -0.02 2.31 16 33 H -0.02 -0.79 8.14 -2.39 -0.02 -0.81 16 34 H 0.07 3.81 6.06 -2.39 -0.01 3.80 16 Total: -1.00 -55.90 255.21 2.83 -53.08 By element: Atomic # 1 Polarization: 3.14 SS G_CDS: 1.04 Total: 4.18 kcal Atomic # 6 Polarization: -29.74 SS G_CDS: 3.72 Total: -26.01 kcal Atomic # 7 Polarization: -73.51 SS G_CDS: -3.96 Total: -77.47 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.22 kcal Total: -55.90 2.83 -53.08 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261114872.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.090 kcal (2) G-P(sol) polarization free energy of solvation -55.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds