Wall clock time and date at job start Mon Mar 30 2020 02:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47044 * 2 1 4 4 C 1.53000 * 109.47548 * 119.99717 * 2 1 3 5 5 C 1.52996 * 110.06610 * 299.58227 * 4 2 1 6 6 N 1.47903 * 109.92034 * 178.37338 * 4 2 1 7 7 C 1.48533 * 105.81826 * 265.97883 * 6 4 2 8 8 C 1.54942 * 103.22969 * 320.79358 * 7 6 4 9 9 C 1.54000 * 109.91556 * 60.78425 * 4 2 1 10 10 H 1.09005 * 110.30400 * 359.21155 * 9 4 2 11 11 C 1.50700 * 110.39241 * 237.08904 * 9 4 2 12 12 H 1.08001 * 119.99752 * 2.78296 * 11 9 4 13 13 C 1.37875 * 119.99888 * 182.77719 * 11 9 4 14 14 N 1.31510 * 120.00155 * 359.97438 * 13 11 9 15 15 Si 1.86803 * 119.99934 * 180.02562 * 13 11 9 16 16 H 1.48495 * 109.47283 * 89.99947 * 15 13 11 17 17 H 1.48497 * 109.47103 * 210.00161 * 15 13 11 18 18 H 1.48509 * 109.47019 * 330.00190 * 15 13 11 19 19 H 1.09001 * 109.47413 * 299.99886 * 1 2 3 20 20 H 1.08997 * 109.47620 * 60.00087 * 1 2 3 21 21 H 1.09004 * 109.47189 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47413 * 240.00114 * 2 1 3 23 23 H 1.09003 * 109.47113 * 54.10778 * 3 2 1 24 24 H 1.08998 * 109.47005 * 174.10762 * 3 2 1 25 25 H 1.08999 * 109.47182 * 294.10938 * 3 2 1 26 26 H 1.09001 * 109.47081 * 300.24048 * 5 4 2 27 27 H 1.08999 * 109.47543 * 60.24197 * 5 4 2 28 28 H 1.09005 * 109.47195 * 180.24586 * 5 4 2 29 29 H 1.00898 * 110.99750 * 145.46593 * 6 4 2 30 30 H 1.09003 * 110.66820 * 79.22502 * 7 6 4 31 31 H 1.08999 * 110.66632 * 202.36001 * 7 6 4 32 32 H 1.09001 * 110.72019 * 155.77329 * 8 7 6 33 33 H 1.08998 * 110.72261 * 279.05619 * 8 7 6 34 34 H 0.97000 * 120.00207 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.5462 -0.0045 2.5075 6 7 3.5185 -0.7612 1.2396 7 6 3.8843 -2.0623 0.6235 8 6 2.8334 -3.0393 1.2080 9 6 1.5487 -2.1807 1.2498 10 1 0.9357 -2.3738 0.3693 11 6 0.7662 -2.4708 2.5047 12 1 0.5853 -1.6842 3.2222 13 6 0.2812 -3.7404 2.7366 14 7 0.5009 -4.6981 1.8625 15 14 -0.6893 -4.0999 4.2917 16 1 -2.1335 -3.8630 4.0398 17 1 -0.4818 -5.5158 4.6885 18 1 -0.2242 -3.2066 5.3831 19 1 -0.3634 0.5138 0.8900 20 1 -0.3634 0.5138 -0.8899 21 1 -0.3634 -1.0277 -0.0005 22 1 1.8933 -0.5138 -0.8900 23 1 1.5930 1.9859 0.8326 24 1 3.1248 1.4443 0.1055 25 1 1.7653 1.9250 -0.9380 26 1 1.9121 1.0223 2.5081 27 1 0.4563 -0.0018 2.5201 28 1 1.9185 -0.5233 3.3910 29 1 3.8883 -0.6876 2.1755 30 1 3.8000 -2.0111 -0.4621 31 1 4.8909 -2.3582 0.9188 32 1 2.7009 -3.9003 0.5529 33 1 3.1180 -3.3568 2.2112 34 1 0.1600 -5.5914 2.0258 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261121826.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:20 Heat of formation + Delta-G solvation = -10.659392 kcal Electronic energy + Delta-G solvation = -13701.448963 eV Core-core repulsion = 11633.637342 eV Total energy + Delta-G solvation = -2067.811622 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.88639 -33.89691 -32.63845 -29.46882 -28.87270 -26.28845 -24.86737 -24.13534 -21.39347 -19.64870 -17.50014 -15.95053 -15.22115 -14.76276 -14.21748 -13.91911 -13.29739 -12.75626 -12.42314 -12.02336 -11.58281 -11.40769 -11.16999 -11.07142 -10.94442 -10.83746 -10.62720 -10.32858 -10.01371 -9.85416 -9.70125 -9.53328 -8.97836 -8.56162 -8.35844 -7.60705 -5.99000 -4.00657 3.29535 3.36975 3.39015 4.44480 5.10789 5.34368 5.58550 5.70200 5.97490 6.03538 6.19827 6.24301 6.27100 6.35219 6.42917 6.47858 6.50675 6.59353 6.73736 6.83370 6.93813 6.97011 7.01177 7.23678 7.24577 7.38504 7.61857 7.68990 7.95135 8.09214 8.20217 8.49859 9.02205 9.63789 11.10895 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.039128 B = 0.013523 C = 0.011940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.423546 B = 2070.104960 C = 2344.574368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.067 4.067 3 C -0.137 4.137 4 C 0.103 3.897 5 C -0.130 4.130 6 N -0.672 5.672 7 C 0.032 3.968 8 C -0.124 4.124 9 C 0.035 3.965 10 H 0.033 0.967 11 C -0.517 4.517 12 H 0.070 0.930 13 C 0.061 3.939 14 N -0.890 5.890 15 Si 0.884 3.116 16 H -0.282 1.282 17 H -0.289 1.289 18 H -0.275 1.275 19 H 0.052 0.948 20 H 0.037 0.963 21 H 0.066 0.934 22 H 0.057 0.943 23 H 0.045 0.955 24 H 0.062 0.938 25 H 0.034 0.966 26 H 0.032 0.968 27 H 0.065 0.935 28 H 0.055 0.945 29 H 0.326 0.674 30 H 0.062 0.938 31 H 0.052 0.948 32 H 0.057 0.943 33 H 0.051 0.949 34 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.644 6.936 -1.499 7.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.086 4.086 3 C -0.195 4.195 4 C 0.012 3.988 5 C -0.188 4.188 6 N -0.299 5.299 7 C -0.097 4.097 8 C -0.163 4.163 9 C 0.016 3.984 10 H 0.051 0.949 11 C -0.555 4.555 12 H 0.088 0.912 13 C -0.140 4.140 14 N -0.529 5.529 15 Si 0.713 3.287 16 H -0.208 1.208 17 H -0.215 1.215 18 H -0.200 1.200 19 H 0.071 0.929 20 H 0.056 0.944 21 H 0.085 0.915 22 H 0.075 0.925 23 H 0.064 0.936 24 H 0.081 0.919 25 H 0.053 0.947 26 H 0.051 0.949 27 H 0.083 0.917 28 H 0.074 0.926 29 H 0.141 0.859 30 H 0.080 0.920 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 2.727 7.183 -2.122 7.971 hybrid contribution -0.814 -1.178 1.545 2.107 sum 1.913 6.005 -0.576 6.329 Atomic orbital electron populations 1.21899 0.95765 1.02621 1.00039 1.20899 0.94663 0.95237 0.97838 1.21782 1.01813 0.96346 0.99533 1.21713 0.86325 0.97276 0.93444 1.22046 1.01706 0.97392 0.97621 1.62868 1.09793 1.33131 1.24098 1.23144 0.97899 0.89728 0.98957 1.22966 0.95809 0.97993 0.99568 1.19859 0.93022 0.87938 0.97627 0.94910 1.21559 1.33363 0.95238 1.05370 0.91204 1.25012 0.96150 0.96627 0.96235 1.69992 1.45954 1.01856 1.35061 0.86718 0.80559 0.77409 0.84045 1.20803 1.21466 1.20011 0.92908 0.94372 0.91459 0.92478 0.93561 0.91894 0.94652 0.94943 0.91664 0.92584 0.85861 0.91972 0.92973 0.92458 0.93030 0.93290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.63 8.61 37.15 0.32 -2.31 16 2 C -0.07 -1.24 2.32 -90.62 -0.21 -1.45 16 3 C -0.14 -2.21 8.60 37.16 0.32 -1.89 16 4 C 0.10 2.07 0.57 -130.53 -0.07 2.00 16 5 C -0.13 -2.52 6.25 37.16 0.23 -2.29 16 6 N -0.67 -12.70 6.27 -96.46 -0.60 -13.30 16 7 C 0.03 0.62 7.54 -1.90 -0.01 0.61 16 8 C -0.12 -2.89 5.58 -24.87 -0.14 -3.03 16 9 C 0.04 0.85 2.03 -90.42 -0.18 0.66 16 10 H 0.03 0.88 6.37 -51.93 -0.33 0.54 16 11 C -0.52 -13.56 7.54 -34.44 -0.26 -13.82 16 12 H 0.07 1.79 4.71 -52.49 -0.25 1.54 16 13 C 0.06 1.67 5.33 -17.82 -0.09 1.57 16 14 N -0.89 -25.43 12.42 55.43 0.69 -24.74 16 15 Si 0.88 21.15 29.54 -169.99 -5.02 16.13 16 16 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 17 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 18 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 19 H 0.05 0.93 6.49 -51.93 -0.34 0.59 16 20 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 21 H 0.07 1.38 6.50 -51.93 -0.34 1.04 16 22 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 23 H 0.05 0.71 6.80 -51.93 -0.35 0.36 16 24 H 0.06 1.03 7.50 -51.93 -0.39 0.64 16 25 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.03 0.55 6.61 -51.93 -0.34 0.21 16 27 H 0.06 1.30 5.61 -51.93 -0.29 1.01 16 28 H 0.06 1.14 6.98 -51.93 -0.36 0.77 16 29 H 0.33 5.96 8.39 -39.29 -0.33 5.63 16 30 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 31 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.06 1.43 8.04 -51.93 -0.42 1.01 16 33 H 0.05 1.28 7.86 -51.93 -0.41 0.88 16 34 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 254.78 15.07 3.84 3.84 Total: -1.00 -27.18 254.78 -6.60 -33.78 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -5.40 Total: 4.23 kcal Atomic # 6 Polarization: -19.83 SS G_CDS: -0.10 Total: -19.93 kcal Atomic # 7 Polarization: -38.13 SS G_CDS: 0.08 Total: -38.05 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -27.18 -6.60 -33.78 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261121826.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.119 kcal (2) G-P(sol) polarization free energy of solvation -27.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds