Wall clock time and date at job start Mon Mar 30 2020 02:00:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47044 * 2 1 4 4 C 1.53000 * 109.47548 * 119.99717 * 2 1 3 5 5 C 1.52996 * 110.06610 * 299.58227 * 4 2 1 6 6 N 1.47903 * 109.92034 * 178.37338 * 4 2 1 7 7 C 1.48533 * 105.81826 * 265.97883 * 6 4 2 8 8 C 1.54942 * 103.22969 * 320.79358 * 7 6 4 9 9 C 1.54000 * 109.91556 * 60.78425 * 4 2 1 10 10 H 1.09005 * 110.30400 * 359.21155 * 9 4 2 11 11 C 1.50700 * 110.39241 * 237.08904 * 9 4 2 12 12 H 1.08001 * 119.99752 * 2.78296 * 11 9 4 13 13 C 1.37875 * 119.99888 * 182.77719 * 11 9 4 14 14 N 1.31510 * 120.00155 * 359.97438 * 13 11 9 15 15 Si 1.86803 * 119.99934 * 180.02562 * 13 11 9 16 16 H 1.48495 * 109.47283 * 89.99947 * 15 13 11 17 17 H 1.48497 * 109.47103 * 210.00161 * 15 13 11 18 18 H 1.48509 * 109.47019 * 330.00190 * 15 13 11 19 19 H 1.09001 * 109.47413 * 299.99886 * 1 2 3 20 20 H 1.08997 * 109.47620 * 60.00087 * 1 2 3 21 21 H 1.09004 * 109.47189 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47413 * 240.00114 * 2 1 3 23 23 H 1.09003 * 109.47113 * 54.10778 * 3 2 1 24 24 H 1.08998 * 109.47005 * 174.10762 * 3 2 1 25 25 H 1.08999 * 109.47182 * 294.10938 * 3 2 1 26 26 H 1.09001 * 109.47081 * 300.24048 * 5 4 2 27 27 H 1.08999 * 109.47543 * 60.24197 * 5 4 2 28 28 H 1.09005 * 109.47195 * 180.24586 * 5 4 2 29 29 H 1.00898 * 110.99750 * 145.46593 * 6 4 2 30 30 H 1.09003 * 110.66820 * 79.22502 * 7 6 4 31 31 H 1.08999 * 110.66632 * 202.36001 * 7 6 4 32 32 H 1.09001 * 110.72019 * 155.77329 * 8 7 6 33 33 H 1.08998 * 110.72261 * 279.05619 * 8 7 6 34 34 H 0.97000 * 120.00207 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.5462 -0.0045 2.5075 6 7 3.5185 -0.7612 1.2396 7 6 3.8843 -2.0623 0.6235 8 6 2.8334 -3.0393 1.2080 9 6 1.5487 -2.1807 1.2498 10 1 0.9357 -2.3738 0.3693 11 6 0.7662 -2.4708 2.5047 12 1 0.5853 -1.6842 3.2222 13 6 0.2812 -3.7404 2.7366 14 7 0.5009 -4.6981 1.8625 15 14 -0.6893 -4.0999 4.2917 16 1 -2.1335 -3.8630 4.0398 17 1 -0.4818 -5.5158 4.6885 18 1 -0.2242 -3.2066 5.3831 19 1 -0.3634 0.5138 0.8900 20 1 -0.3634 0.5138 -0.8899 21 1 -0.3634 -1.0277 -0.0005 22 1 1.8933 -0.5138 -0.8900 23 1 1.5930 1.9859 0.8326 24 1 3.1248 1.4443 0.1055 25 1 1.7653 1.9250 -0.9380 26 1 1.9121 1.0223 2.5081 27 1 0.4563 -0.0018 2.5201 28 1 1.9185 -0.5233 3.3910 29 1 3.8883 -0.6876 2.1755 30 1 3.8000 -2.0111 -0.4621 31 1 4.8909 -2.3582 0.9188 32 1 2.7009 -3.9003 0.5529 33 1 3.1180 -3.3568 2.2112 34 1 0.1600 -5.5914 2.0258 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261121826.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:19 Heat of formation + Delta-G solvation = -27.470506 kcal Electronic energy + Delta-G solvation = -13702.177948 eV Core-core repulsion = 11633.637342 eV Total energy + Delta-G solvation = -2068.540606 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.55131 -35.48918 -34.61051 -31.14517 -30.66635 -27.68582 -26.66640 -25.93663 -22.99266 -21.47178 -19.15245 -17.92138 -16.89116 -16.54086 -16.00317 -15.52296 -14.89640 -14.54398 -14.10169 -13.53720 -13.25085 -13.09231 -12.88033 -12.64587 -12.62304 -12.54571 -12.37940 -11.97244 -11.63685 -11.49735 -11.41148 -11.28164 -10.67783 -10.50772 -10.44025 -9.24538 -8.08214 -6.14829 1.38647 1.40472 1.48753 2.43977 3.24001 3.52249 4.05919 4.21090 4.46194 4.52998 4.59591 4.65509 4.74453 4.85194 4.87422 4.95414 5.00522 5.16119 5.16827 5.25218 5.33116 5.41651 5.45363 5.58894 5.69878 5.71783 5.74605 5.77214 5.95402 6.27343 6.40808 6.70184 6.98870 7.52692 9.01282 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.039128 B = 0.013523 C = 0.011940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.423546 B = 2070.104960 C = 2344.574368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.067 4.067 3 C -0.128 4.128 4 C 0.106 3.894 5 C -0.124 4.124 6 N -0.658 5.658 7 C 0.045 3.955 8 C -0.120 4.120 9 C 0.030 3.970 10 H -0.002 1.002 11 C -0.520 4.520 12 H 0.077 0.923 13 C 0.008 3.992 14 N -0.925 5.925 15 Si 0.944 3.056 16 H -0.279 1.279 17 H -0.292 1.292 18 H -0.265 1.265 19 H 0.057 0.943 20 H 0.062 0.938 21 H 0.032 0.968 22 H 0.044 0.956 23 H 0.054 0.946 24 H 0.061 0.939 25 H 0.053 0.947 26 H 0.060 0.940 27 H 0.055 0.945 28 H 0.043 0.957 29 H 0.333 0.667 30 H 0.067 0.933 31 H 0.078 0.922 32 H 0.029 0.971 33 H 0.029 0.971 34 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.135 8.920 -1.028 9.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.087 4.087 3 C -0.185 4.185 4 C 0.015 3.985 5 C -0.181 4.181 6 N -0.285 5.285 7 C -0.085 4.085 8 C -0.159 4.159 9 C 0.010 3.990 10 H 0.016 0.984 11 C -0.559 4.559 12 H 0.095 0.905 13 C -0.190 4.190 14 N -0.565 5.565 15 Si 0.770 3.230 16 H -0.205 1.205 17 H -0.218 1.218 18 H -0.189 1.189 19 H 0.076 0.924 20 H 0.081 0.919 21 H 0.051 0.949 22 H 0.062 0.938 23 H 0.073 0.927 24 H 0.080 0.920 25 H 0.072 0.928 26 H 0.079 0.921 27 H 0.074 0.926 28 H 0.062 0.938 29 H 0.149 0.851 30 H 0.085 0.915 31 H 0.096 0.904 32 H 0.048 0.952 33 H 0.048 0.952 34 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 3.223 9.188 -1.641 9.874 hybrid contribution -0.973 -1.804 1.365 2.462 sum 2.250 7.384 -0.277 7.724 Atomic orbital electron populations 1.21835 0.95682 1.00763 1.01516 1.20887 0.94750 0.96816 0.96214 1.21687 1.01616 0.94230 1.00987 1.21641 0.86933 0.94873 0.95016 1.21946 1.01085 0.98686 0.96398 1.62889 1.08798 1.32285 1.24551 1.23065 0.97824 0.88510 0.99074 1.22806 0.97266 0.97926 0.97952 1.19848 0.92726 0.91131 0.95306 0.98378 1.21973 1.32691 0.95211 1.05983 0.90530 1.25767 0.97451 0.96793 0.99007 1.70135 1.47441 1.02046 1.36880 0.85768 0.79217 0.77025 0.80940 1.20512 1.21782 1.18917 0.92379 0.91923 0.94930 0.93779 0.92688 0.91969 0.92781 0.92144 0.92582 0.93794 0.85121 0.91484 0.90390 0.95230 0.95167 0.93677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.91 8.61 71.98 0.62 -4.29 16 2 C -0.07 -2.38 2.32 -10.80 -0.03 -2.40 16 3 C -0.13 -3.65 8.60 71.98 0.62 -3.03 16 4 C 0.11 4.14 0.57 3.67 0.00 4.14 16 5 C -0.12 -4.53 6.25 71.98 0.45 -4.08 16 6 N -0.66 -23.43 6.27 -459.10 -2.88 -26.31 16 7 C 0.04 1.68 7.54 86.65 0.65 2.33 16 8 C -0.12 -5.69 5.58 31.80 0.18 -5.51 16 9 C 0.03 1.45 2.03 -10.66 -0.02 1.43 16 10 H 0.00 -0.11 6.37 -2.38 -0.02 -0.12 16 11 C -0.52 -27.56 7.54 25.60 0.19 -27.36 16 12 H 0.08 3.88 4.71 -2.91 -0.01 3.87 16 13 C 0.01 0.42 5.33 84.65 0.45 0.87 16 14 N -0.92 -54.51 12.42 21.45 0.27 -54.24 16 15 Si 0.94 43.78 29.54 68.60 2.03 45.80 16 16 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 17 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 18 H -0.26 -11.73 7.11 99.48 0.71 -11.03 16 19 H 0.06 1.94 6.49 -2.39 -0.02 1.93 16 20 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 21 H 0.03 1.34 6.50 -2.38 -0.02 1.33 16 22 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 23 H 0.05 1.47 6.80 -2.39 -0.02 1.46 16 24 H 0.06 1.80 7.50 -2.39 -0.02 1.78 16 25 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.06 1.87 6.61 -2.39 -0.02 1.86 16 27 H 0.06 2.14 5.61 -2.39 -0.01 2.13 16 28 H 0.04 1.70 6.98 -2.38 -0.02 1.68 16 29 H 0.33 11.28 8.39 -89.70 -0.75 10.52 16 30 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 31 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 32 H 0.03 1.52 8.04 -2.39 -0.02 1.50 16 33 H 0.03 1.52 7.86 -2.39 -0.02 1.50 16 34 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 Total: -1.00 -58.55 254.78 2.86 -55.70 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: 0.32 Total: 16.95 kcal Atomic # 6 Polarization: -41.02 SS G_CDS: 3.12 Total: -37.91 kcal Atomic # 7 Polarization: -77.94 SS G_CDS: -2.61 Total: -80.55 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.80 kcal Total: -58.55 2.86 -55.70 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261121826.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.228 kcal (2) G-P(sol) polarization free energy of solvation -58.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds