Wall clock time and date at job start Mon Mar 30 2020 02:12:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47355 * 2 1 4 4 C 1.53006 * 109.47135 * 294.18219 * 3 2 1 5 5 C 1.50703 * 109.47039 * 174.18370 * 3 2 1 6 6 H 1.07998 * 119.99426 * 244.62218 * 5 3 2 7 7 C 1.37871 * 120.00201 * 64.61714 * 5 3 2 8 8 N 1.31514 * 120.00393 * 152.22229 * 7 5 3 9 9 Si 1.86798 * 119.99848 * 331.94508 * 7 5 3 10 10 H 1.48508 * 109.47080 * 180.27567 * 9 7 5 11 11 H 1.48500 * 109.47326 * 300.27181 * 9 7 5 12 12 H 1.48501 * 109.47256 * 60.27797 * 9 7 5 13 13 N 1.46904 * 109.47204 * 54.18292 * 3 2 1 14 14 C 1.48529 * 111.00119 * 61.44299 * 13 3 2 15 15 C 1.54938 * 103.22722 * 159.71925 * 14 13 3 16 16 C 1.54597 * 102.92263 * 322.58923 * 15 14 13 17 17 C 1.47902 * 110.99862 * 178.84171 * 13 3 2 18 18 H 1.09004 * 109.47222 * 304.04450 * 1 2 3 19 19 H 1.08997 * 109.46855 * 64.03685 * 1 2 3 20 20 H 1.08997 * 109.47731 * 184.03966 * 1 2 3 21 21 H 1.08999 * 109.46867 * 239.99249 * 2 1 3 22 22 H 1.09002 * 109.46811 * 120.00345 * 2 1 3 23 23 H 1.09001 * 109.46518 * 302.38927 * 4 3 2 24 24 H 1.08997 * 109.46993 * 62.38983 * 4 3 2 25 25 H 1.09003 * 109.46857 * 182.38860 * 4 3 2 26 26 H 0.97004 * 119.99160 * 354.38520 * 8 7 5 27 27 H 1.08994 * 110.67096 * 278.15708 * 14 13 3 28 28 H 1.09003 * 110.66387 * 41.28653 * 14 13 3 29 29 H 1.09001 * 110.72553 * 204.22968 * 15 14 13 30 30 H 1.09000 * 110.72100 * 80.94238 * 15 14 13 31 31 H 1.08998 * 110.30993 * 263.03941 * 16 15 14 32 32 H 1.08996 * 110.39691 * 140.91295 * 16 15 14 33 33 H 1.08996 * 109.91499 * 333.50968 * 17 13 3 34 34 H 1.09009 * 109.91623 * 94.60320 * 17 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 1.6530 2.1203 -1.3160 5 6 3.5402 1.4448 0.1440 6 1 3.9976 1.8748 1.0228 7 6 4.3287 0.8979 -0.8460 8 7 5.5528 1.3412 -1.0318 9 14 3.6608 -0.4781 -1.9184 10 1 4.6998 -0.8932 -2.8950 11 1 3.2927 -1.6365 -1.0652 12 1 2.4593 0.0013 -2.6476 13 7 1.4392 2.1743 1.1231 14 6 1.8223 1.5642 2.4220 15 6 1.5736 2.7074 3.4377 16 6 2.0159 3.9661 2.6567 17 6 1.9315 3.5681 1.1715 18 1 -0.3634 0.5753 0.8515 19 1 -0.3633 0.4499 -0.9239 20 1 -0.3634 -1.0250 0.0724 21 1 1.8933 -0.5139 -0.8899 22 1 1.8933 -0.5139 0.8900 23 1 2.0636 1.5530 -2.1513 24 1 0.5669 2.1565 -1.4002 25 1 2.0528 3.1341 -1.3337 26 1 5.8731 2.1062 -0.5286 27 1 1.1886 0.7061 2.6458 28 1 2.8736 1.2763 2.4165 29 1 2.1862 2.5715 4.3290 30 1 0.5173 2.7675 3.6998 31 1 3.0393 4.2340 2.9190 32 1 1.3428 4.7979 2.8642 33 1 2.9189 3.6292 0.7140 34 1 1.2380 4.2253 0.6466 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261127569.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:07 Heat of formation + Delta-G solvation = 8.790245 kcal Electronic energy + Delta-G solvation = -13843.984852 eV Core-core repulsion = 11777.016630 eV Total energy + Delta-G solvation = -2066.968222 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.71621 -34.89257 -32.13098 -29.91149 -28.41471 -27.34427 -25.01831 -22.36507 -21.12203 -20.00646 -18.98234 -16.75799 -15.30585 -15.09542 -14.16649 -13.62012 -13.24056 -12.95349 -12.64792 -12.27250 -11.83669 -11.43065 -11.31737 -11.24132 -10.92408 -10.71338 -10.49189 -10.35838 -10.04814 -9.91693 -9.85498 -9.47902 -9.12901 -8.81639 -8.23254 -7.29468 -6.38935 -4.07381 3.36673 3.43231 3.63888 4.48076 5.06462 5.14433 5.37287 5.41666 5.60555 6.00493 6.03367 6.09421 6.16225 6.27785 6.35356 6.37422 6.54048 6.57257 6.59759 6.69710 6.76045 6.77676 6.87321 6.93541 7.06078 7.09851 7.24962 7.36266 7.98443 8.10338 8.25962 8.36489 8.92183 9.56524 10.84680 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.036811 B = 0.016343 C = 0.013554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.456526 B = 1712.863896 C = 2065.384747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.120 4.120 3 C 0.203 3.797 4 C -0.139 4.139 5 C -0.632 4.632 6 H 0.062 0.938 7 C 0.046 3.954 8 N -0.891 5.891 9 Si 1.044 2.956 10 H -0.300 1.300 11 H -0.287 1.287 12 H -0.273 1.273 13 N -0.503 5.503 14 C 0.039 3.961 15 C -0.124 4.124 16 C -0.128 4.128 17 C 0.039 3.961 18 H 0.063 0.937 19 H 0.045 0.955 20 H 0.030 0.970 21 H 0.045 0.955 22 H 0.054 0.946 23 H 0.053 0.947 24 H 0.033 0.967 25 H 0.042 0.958 26 H 0.269 0.731 27 H 0.064 0.936 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.062 0.938 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.064 0.936 34 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.956 1.009 4.063 8.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.157 4.157 3 C 0.113 3.887 4 C -0.197 4.197 5 C -0.670 4.670 6 H 0.080 0.920 7 C -0.162 4.162 8 N -0.523 5.523 9 Si 0.877 3.123 10 H -0.228 1.228 11 H -0.215 1.215 12 H -0.201 1.201 13 N -0.227 5.227 14 C -0.090 4.090 15 C -0.162 4.162 16 C -0.166 4.166 17 C -0.089 4.089 18 H 0.082 0.918 19 H 0.064 0.936 20 H 0.049 0.951 21 H 0.063 0.937 22 H 0.073 0.927 23 H 0.072 0.928 24 H 0.052 0.948 25 H 0.061 0.939 26 H 0.079 0.921 27 H 0.082 0.918 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.085 -0.049 2.769 8.546 hybrid contribution 0.568 1.038 1.318 1.771 sum -7.517 0.989 4.086 8.613 Atomic orbital electron populations 1.21756 0.97234 0.99141 1.01915 1.22019 0.94374 0.99135 1.00206 1.19014 0.92827 0.89075 0.87734 1.22190 0.98275 1.00510 0.98679 1.22294 0.91059 1.45617 1.08017 0.92008 1.25616 0.94676 0.99427 0.96487 1.70847 1.19410 1.24198 1.37803 0.84310 0.74540 0.77088 0.76320 1.22826 1.21487 1.20112 1.64999 1.54156 1.01247 1.02333 1.23102 1.00350 0.96051 0.89467 1.22466 1.00378 0.95763 0.97592 1.22359 1.00243 0.97534 0.96480 1.22703 1.00220 0.91431 0.94570 0.91782 0.93631 0.95106 0.93712 0.92710 0.92810 0.94847 0.93895 0.92079 0.91786 0.92247 0.92427 0.91941 0.92525 0.92479 0.91798 0.92554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.67 9.44 37.16 0.35 -2.32 16 2 C -0.12 -2.63 3.69 -26.73 -0.10 -2.73 16 3 C 0.20 4.72 0.12 -132.75 -0.02 4.70 16 4 C -0.14 -3.15 7.72 37.16 0.29 -2.86 16 5 C -0.63 -16.99 6.20 -34.44 -0.21 -17.21 16 6 H 0.06 1.80 6.28 -52.49 -0.33 1.47 16 7 C 0.05 1.29 5.14 -17.82 -0.09 1.20 16 8 N -0.89 -26.79 13.69 55.43 0.76 -26.03 16 9 Si 1.04 25.58 23.46 -169.99 -3.99 21.59 16 10 H -0.30 -7.52 7.11 56.52 0.40 -7.12 16 11 H -0.29 -6.73 6.77 56.52 0.38 -6.35 16 12 H -0.27 -6.23 5.42 56.52 0.31 -5.92 16 13 N -0.50 -10.56 4.02 -216.18 -0.87 -11.42 16 14 C 0.04 0.75 5.20 -1.90 -0.01 0.74 16 15 C -0.12 -2.03 7.06 -24.87 -0.18 -2.21 16 16 C -0.13 -2.16 6.93 -25.37 -0.18 -2.34 16 17 C 0.04 0.78 5.12 -2.75 -0.01 0.77 16 18 H 0.06 1.18 7.16 -51.93 -0.37 0.81 16 19 H 0.04 0.83 6.84 -51.93 -0.36 0.47 16 20 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 21 H 0.04 1.02 2.75 -51.93 -0.14 0.88 16 22 H 0.05 1.22 7.28 -51.93 -0.38 0.84 16 23 H 0.05 1.26 4.40 -51.93 -0.23 1.03 16 24 H 0.03 0.68 6.80 -51.93 -0.35 0.33 16 25 H 0.04 0.97 7.20 -51.93 -0.37 0.60 16 26 H 0.27 8.06 8.73 -40.82 -0.36 7.71 16 27 H 0.06 1.19 7.71 -51.93 -0.40 0.79 16 28 H 0.06 1.33 6.06 -51.93 -0.31 1.01 16 29 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 31 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.06 1.48 6.11 -51.93 -0.32 1.16 16 34 H 0.06 1.07 8.14 -51.92 -0.42 0.65 16 LS Contribution 243.26 15.07 3.67 3.67 Total: -1.00 -28.14 243.26 -5.96 -34.10 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: -5.37 Total: 0.35 kcal Atomic # 6 Polarization: -22.09 SS G_CDS: -0.16 Total: -22.24 kcal Atomic # 7 Polarization: -37.35 SS G_CDS: -0.11 Total: -37.45 kcal Atomic # 14 Polarization: 25.58 SS G_CDS: -3.99 Total: 21.59 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -28.14 -5.96 -34.10 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261127569.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.886 kcal (2) G-P(sol) polarization free energy of solvation -28.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.096 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds