Wall clock time and date at job start Mon Mar 30 2020 02:12:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47355 * 2 1 4 4 C 1.53006 * 109.47135 * 294.18219 * 3 2 1 5 5 C 1.50703 * 109.47039 * 174.18370 * 3 2 1 6 6 H 1.07998 * 119.99426 * 244.62218 * 5 3 2 7 7 C 1.37871 * 120.00201 * 64.61714 * 5 3 2 8 8 N 1.31514 * 120.00393 * 152.22229 * 7 5 3 9 9 Si 1.86798 * 119.99848 * 331.94508 * 7 5 3 10 10 H 1.48508 * 109.47080 * 180.27567 * 9 7 5 11 11 H 1.48500 * 109.47326 * 300.27181 * 9 7 5 12 12 H 1.48501 * 109.47256 * 60.27797 * 9 7 5 13 13 N 1.46904 * 109.47204 * 54.18292 * 3 2 1 14 14 C 1.48529 * 111.00119 * 61.44299 * 13 3 2 15 15 C 1.54938 * 103.22722 * 159.71925 * 14 13 3 16 16 C 1.54597 * 102.92263 * 322.58923 * 15 14 13 17 17 C 1.47902 * 110.99862 * 178.84171 * 13 3 2 18 18 H 1.09004 * 109.47222 * 304.04450 * 1 2 3 19 19 H 1.08997 * 109.46855 * 64.03685 * 1 2 3 20 20 H 1.08997 * 109.47731 * 184.03966 * 1 2 3 21 21 H 1.08999 * 109.46867 * 239.99249 * 2 1 3 22 22 H 1.09002 * 109.46811 * 120.00345 * 2 1 3 23 23 H 1.09001 * 109.46518 * 302.38927 * 4 3 2 24 24 H 1.08997 * 109.46993 * 62.38983 * 4 3 2 25 25 H 1.09003 * 109.46857 * 182.38860 * 4 3 2 26 26 H 0.97004 * 119.99160 * 354.38520 * 8 7 5 27 27 H 1.08994 * 110.67096 * 278.15708 * 14 13 3 28 28 H 1.09003 * 110.66387 * 41.28653 * 14 13 3 29 29 H 1.09001 * 110.72553 * 204.22968 * 15 14 13 30 30 H 1.09000 * 110.72100 * 80.94238 * 15 14 13 31 31 H 1.08998 * 110.30993 * 263.03941 * 16 15 14 32 32 H 1.08996 * 110.39691 * 140.91295 * 16 15 14 33 33 H 1.08996 * 109.91499 * 333.50968 * 17 13 3 34 34 H 1.09009 * 109.91623 * 94.60320 * 17 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 1.6530 2.1203 -1.3160 5 6 3.5402 1.4448 0.1440 6 1 3.9976 1.8748 1.0228 7 6 4.3287 0.8979 -0.8460 8 7 5.5528 1.3412 -1.0318 9 14 3.6608 -0.4781 -1.9184 10 1 4.6998 -0.8932 -2.8950 11 1 3.2927 -1.6365 -1.0652 12 1 2.4593 0.0013 -2.6476 13 7 1.4392 2.1743 1.1231 14 6 1.8223 1.5642 2.4220 15 6 1.5736 2.7074 3.4377 16 6 2.0159 3.9661 2.6567 17 6 1.9315 3.5681 1.1715 18 1 -0.3634 0.5753 0.8515 19 1 -0.3633 0.4499 -0.9239 20 1 -0.3634 -1.0250 0.0724 21 1 1.8933 -0.5139 -0.8899 22 1 1.8933 -0.5139 0.8900 23 1 2.0636 1.5530 -2.1513 24 1 0.5669 2.1565 -1.4002 25 1 2.0528 3.1341 -1.3337 26 1 5.8731 2.1062 -0.5286 27 1 1.1886 0.7061 2.6458 28 1 2.8736 1.2763 2.4165 29 1 2.1862 2.5715 4.3290 30 1 0.5173 2.7675 3.6998 31 1 3.0393 4.2340 2.9190 32 1 1.3428 4.7979 2.8642 33 1 2.9189 3.6292 0.7140 34 1 1.2380 4.2253 0.6466 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261127569.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:07 Heat of formation + Delta-G solvation = -10.108632 kcal Electronic energy + Delta-G solvation = -13844.804369 eV Core-core repulsion = 11777.016630 eV Total energy + Delta-G solvation = -2067.787739 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.40493 -36.57190 -34.22030 -31.50263 -30.02601 -28.99187 -26.99444 -24.14760 -22.74224 -21.47820 -20.93344 -18.69113 -16.93620 -16.84115 -15.90096 -15.36287 -14.92669 -14.75137 -14.31151 -13.97340 -13.65047 -13.19210 -12.93425 -12.86036 -12.66254 -12.26590 -12.05963 -11.89904 -11.87220 -11.69197 -11.40681 -11.21000 -11.04207 -10.66693 -10.34550 -9.22829 -8.51647 -6.28908 1.40102 1.46355 1.68596 2.45302 2.98572 3.42889 3.92666 3.94396 4.21112 4.33931 4.41877 4.59194 4.65187 4.77029 4.84624 4.87525 4.90018 4.96955 5.01570 5.10258 5.14459 5.19945 5.26125 5.31000 5.38510 5.45748 5.61454 5.65379 6.02829 6.07287 6.28183 6.40152 6.79802 7.41479 8.59807 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.036811 B = 0.016343 C = 0.013554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.456526 B = 1712.863896 C = 2065.384747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.123 4.123 3 C 0.199 3.801 4 C -0.135 4.135 5 C -0.619 4.619 6 H 0.024 0.976 7 C -0.005 4.005 8 N -0.929 5.929 9 Si 1.077 2.923 10 H -0.311 1.311 11 H -0.269 1.269 12 H -0.242 1.242 13 N -0.496 5.496 14 C 0.035 3.965 15 C -0.113 4.113 16 C -0.124 4.124 17 C 0.037 3.963 18 H 0.066 0.934 19 H 0.052 0.948 20 H 0.055 0.945 21 H 0.039 0.961 22 H 0.045 0.955 23 H 0.045 0.955 24 H 0.059 0.941 25 H 0.029 0.971 26 H 0.254 0.746 27 H 0.078 0.922 28 H 0.021 0.979 29 H 0.073 0.927 30 H 0.086 0.914 31 H 0.049 0.951 32 H 0.087 0.913 33 H 0.020 0.980 34 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.883 0.582 4.538 11.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.160 4.160 3 C 0.109 3.891 4 C -0.192 4.192 5 C -0.657 4.657 6 H 0.042 0.958 7 C -0.205 4.205 8 N -0.563 5.563 9 Si 0.905 3.095 10 H -0.240 1.240 11 H -0.196 1.196 12 H -0.168 1.168 13 N -0.220 5.220 14 C -0.093 4.093 15 C -0.151 4.151 16 C -0.162 4.162 17 C -0.091 4.091 18 H 0.085 0.915 19 H 0.071 0.929 20 H 0.074 0.926 21 H 0.058 0.942 22 H 0.064 0.936 23 H 0.064 0.936 24 H 0.078 0.922 25 H 0.048 0.952 26 H 0.062 0.938 27 H 0.096 0.904 28 H 0.039 0.961 29 H 0.091 0.909 30 H 0.105 0.895 31 H 0.068 0.932 32 H 0.106 0.894 33 H 0.038 0.962 34 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -11.041 -0.467 3.266 11.523 hybrid contribution 1.504 1.242 1.259 2.321 sum -9.537 0.775 4.525 10.585 Atomic orbital electron populations 1.21669 0.94068 1.00992 1.02411 1.21959 0.97182 0.97339 0.99541 1.18998 0.90237 0.90816 0.89086 1.22113 0.99842 0.99479 0.97816 1.22473 0.93664 1.43511 1.06022 0.95800 1.26825 0.94426 1.01149 0.98137 1.70967 1.21071 1.24962 1.39350 0.83920 0.74955 0.75319 0.75355 1.23988 1.19583 1.16752 1.65027 1.53237 1.01416 1.02270 1.23133 0.98244 0.97925 0.90028 1.22453 1.02185 0.93480 0.96990 1.22349 1.00831 0.98948 0.94057 1.22715 0.98035 0.91498 0.96899 0.91475 0.92929 0.92624 0.94248 0.93617 0.93632 0.92183 0.95166 0.93750 0.90405 0.96101 0.90868 0.89492 0.93211 0.89396 0.96165 0.91240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.44 9.44 71.98 0.68 -3.76 16 2 C -0.12 -5.09 3.69 30.59 0.11 -4.98 16 3 C 0.20 9.05 0.12 2.78 0.00 9.05 16 4 C -0.13 -5.90 7.72 71.98 0.56 -5.34 16 5 C -0.62 -34.18 6.20 25.60 0.16 -34.02 16 6 H 0.02 1.47 6.28 -2.91 -0.02 1.46 16 7 C 0.00 -0.27 5.14 84.65 0.44 0.17 16 8 N -0.93 -58.27 13.69 21.45 0.29 -57.98 16 9 Si 1.08 51.26 23.46 68.60 1.61 52.87 16 10 H -0.31 -15.30 7.11 99.48 0.71 -14.59 16 11 H -0.27 -11.95 6.77 99.48 0.67 -11.28 16 12 H -0.24 -10.24 5.42 99.48 0.54 -9.70 16 13 N -0.50 -20.06 4.02 -837.87 -3.36 -23.42 16 14 C 0.03 1.32 5.20 86.65 0.45 1.77 16 15 C -0.11 -3.39 7.06 31.80 0.22 -3.16 16 16 C -0.12 -3.94 6.93 31.47 0.22 -3.72 16 17 C 0.04 1.46 5.12 86.45 0.44 1.90 16 18 H 0.07 2.18 7.16 -2.39 -0.02 2.16 16 19 H 0.05 1.66 6.84 -2.39 -0.02 1.65 16 20 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 21 H 0.04 1.68 2.75 -2.39 -0.01 1.67 16 22 H 0.05 1.95 7.28 -2.39 -0.02 1.93 16 23 H 0.04 2.04 4.40 -2.39 -0.01 2.03 16 24 H 0.06 2.28 6.80 -2.39 -0.02 2.27 16 25 H 0.03 1.35 7.20 -2.39 -0.02 1.33 16 26 H 0.25 16.15 8.73 -92.71 -0.81 15.34 16 27 H 0.08 2.71 7.71 -2.39 -0.02 2.70 16 28 H 0.02 0.95 6.06 -2.39 -0.01 0.93 16 29 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 31 H 0.05 1.63 8.14 -2.39 -0.02 1.62 16 32 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 33 H 0.02 0.96 6.11 -2.39 -0.01 0.95 16 34 H 0.07 2.53 8.14 -2.38 -0.02 2.51 16 Total: -1.00 -62.29 243.26 2.64 -59.65 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: 0.83 Total: 10.98 kcal Atomic # 6 Polarization: -45.37 SS G_CDS: 3.28 Total: -42.09 kcal Atomic # 7 Polarization: -78.33 SS G_CDS: -3.07 Total: -81.40 kcal Atomic # 14 Polarization: 51.26 SS G_CDS: 1.61 Total: 52.87 kcal Total: -62.29 2.64 -59.65 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261127569.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.541 kcal (2) G-P(sol) polarization free energy of solvation -62.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds