Wall clock time and date at job start Mon Mar 30 2020 02:03:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47102 * 2 1 4 4 C 1.53003 * 109.47006 * 120.00179 * 2 1 3 5 5 C 1.52997 * 109.47122 * 53.71233 * 4 2 1 6 6 C 1.50702 * 109.46836 * 173.71628 * 4 2 1 7 7 H 1.07994 * 120.00153 * 120.00033 * 6 4 2 8 8 C 1.37875 * 119.99561 * 299.99380 * 6 4 2 9 9 N 1.31510 * 120.00671 * 0.02562 * 8 6 4 10 10 Si 1.86801 * 119.99747 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.47265 * 0.02562 * 10 8 6 12 12 H 1.48499 * 109.47228 * 119.99718 * 10 8 6 13 13 H 1.48501 * 109.47230 * 240.00094 * 10 8 6 14 14 N 1.46902 * 109.46842 * 293.71072 * 4 2 1 15 15 C 1.46902 * 110.99983 * 66.65806 * 14 4 2 16 16 C 1.53003 * 117.49704 * 225.28865 * 15 14 4 17 17 C 1.52995 * 117.50133 * 156.66535 * 15 14 4 18 18 H 1.08999 * 109.47143 * 69.32624 * 1 2 3 19 19 H 1.08998 * 109.47379 * 189.32190 * 1 2 3 20 20 H 1.08994 * 109.46863 * 309.32700 * 1 2 3 21 21 H 1.09004 * 109.46942 * 239.99625 * 2 1 3 22 22 H 1.09001 * 109.47118 * 180.02562 * 3 2 1 23 23 H 1.09000 * 109.46978 * 299.99528 * 3 2 1 24 24 H 1.08996 * 109.46721 * 59.99881 * 3 2 1 25 25 H 1.08998 * 109.47209 * 60.00536 * 5 4 2 26 26 H 1.08998 * 109.46799 * 299.99713 * 5 4 2 27 27 H 1.09000 * 109.46813 * 180.02562 * 5 4 2 28 28 H 0.96996 * 120.00381 * 179.97438 * 9 8 6 29 29 H 1.00896 * 111.00268 * 190.60912 * 14 4 2 30 30 H 1.09007 * 115.54961 * 10.99158 * 15 14 4 31 31 H 1.08995 * 117.50242 * 359.97438 * 16 15 14 32 32 H 1.08994 * 117.50164 * 145.02496 * 16 15 14 33 33 H 1.08996 * 117.50171 * 214.97904 * 17 15 14 34 34 H 1.09010 * 117.49778 * 359.97438 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.4051 -2.1109 1.3307 6 6 3.5390 -0.8574 1.1739 7 1 4.1606 -0.4131 1.9371 8 6 4.1167 -1.5493 0.1306 9 7 3.3599 -2.0901 -0.7990 10 14 5.9747 -1.7186 0.0376 11 1 6.5936 -1.0260 1.1963 12 1 6.3428 -3.1570 0.0671 13 1 6.4649 -1.1080 -1.2242 14 7 1.6781 0.0533 2.4439 15 6 0.2220 0.0732 2.6372 16 6 -0.4272 1.4163 2.9772 17 6 -0.2994 0.3346 4.0516 18 1 -0.3633 0.3628 -0.9615 19 1 -0.3634 -1.0141 0.1665 20 1 -0.3633 0.6513 0.7949 21 1 1.8933 -0.5139 -0.8900 22 1 3.1300 1.4425 -0.0005 23 1 1.6768 1.9563 -0.8900 24 1 1.6767 1.9563 0.8900 25 1 1.6737 -2.6856 0.4443 26 1 0.3210 -2.0124 1.3852 27 1 1.7681 -2.6246 2.2209 28 1 3.7664 -2.5765 -1.5331 29 1 2.1466 -0.3047 3.2626 30 1 -0.3448 -0.6161 2.0112 31 1 0.2261 2.2850 3.0578 32 1 -1.4213 1.6110 2.5749 33 1 -1.2094 -0.1824 4.3562 34 1 0.4381 0.4914 4.8389 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261127902.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:48 Heat of formation + Delta-G solvation = 33.786091 kcal Electronic energy + Delta-G solvation = -13703.498888 eV Core-core repulsion = 11637.614567 eV Total energy + Delta-G solvation = -2065.884321 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.44324 -35.29352 -32.02595 -30.83559 -27.42067 -26.63957 -24.54980 -21.92167 -21.72088 -20.00774 -18.23633 -16.43460 -15.07440 -14.70482 -14.15353 -13.40299 -13.02285 -12.73917 -12.41177 -12.27082 -11.56619 -11.15813 -10.96409 -10.89764 -10.73291 -10.69885 -10.41562 -10.17210 -10.01190 -9.90378 -9.55319 -9.32073 -8.97595 -8.45998 -8.30162 -7.10105 -5.97214 -4.04131 3.29546 3.38168 3.42274 4.41167 4.45848 5.09918 5.29846 5.52615 5.57727 6.03477 6.07693 6.23620 6.26455 6.34836 6.41852 6.57402 6.65423 6.71593 6.83903 6.97516 6.99518 7.04077 7.21765 7.34323 7.57604 7.65765 7.83001 7.86728 7.99092 8.40204 8.56043 8.72154 9.03323 9.61180 11.04852 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.046127 B = 0.012357 C = 0.011731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.879548 B = 2265.302080 C = 2386.307183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.077 4.077 3 C -0.117 4.117 4 C 0.245 3.755 5 C -0.170 4.170 6 C -0.495 4.495 7 H 0.059 0.941 8 C 0.063 3.937 9 N -0.887 5.887 10 Si 0.893 3.107 11 H -0.274 1.274 12 H -0.286 1.286 13 H -0.285 1.285 14 N -0.649 5.649 15 C 0.032 3.968 16 C -0.182 4.182 17 C -0.212 4.212 18 H 0.025 0.975 19 H 0.045 0.955 20 H 0.061 0.939 21 H 0.099 0.901 22 H 0.051 0.949 23 H 0.014 0.986 24 H 0.047 0.953 25 H 0.088 0.912 26 H 0.018 0.982 27 H 0.022 0.978 28 H 0.259 0.741 29 H 0.330 0.670 30 H 0.109 0.891 31 H 0.091 0.909 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.041 2.784 3.756 6.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.097 4.097 3 C -0.174 4.174 4 C 0.155 3.845 5 C -0.229 4.229 6 C -0.534 4.534 7 H 0.078 0.922 8 C -0.138 4.138 9 N -0.527 5.527 10 Si 0.721 3.279 11 H -0.199 1.199 12 H -0.213 1.213 13 H -0.211 1.211 14 N -0.278 5.278 15 C -0.079 4.079 16 C -0.221 4.221 17 C -0.251 4.251 18 H 0.044 0.956 19 H 0.064 0.936 20 H 0.080 0.920 21 H 0.117 0.883 22 H 0.070 0.930 23 H 0.033 0.967 24 H 0.066 0.934 25 H 0.106 0.894 26 H 0.037 0.963 27 H 0.041 0.959 28 H 0.069 0.931 29 H 0.148 0.852 30 H 0.126 0.874 31 H 0.110 0.890 32 H 0.100 0.900 33 H 0.100 0.900 34 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -4.967 3.277 3.251 6.781 hybrid contribution 0.776 -1.019 0.214 1.299 sum -4.191 2.257 3.465 5.888 Atomic orbital electron populations 1.22523 0.99596 1.00353 0.99767 1.21063 0.91201 0.95590 1.01817 1.21516 1.01042 0.96784 0.98076 1.18543 0.94129 0.86510 0.85272 1.22578 0.96170 1.01838 1.02294 1.21070 0.90583 1.32703 1.09002 0.92249 1.24835 0.97844 0.95467 0.95630 1.69805 1.34193 1.36053 1.12602 0.86525 0.85883 0.77553 0.77940 1.19858 1.21268 1.21109 1.60541 1.01925 1.58186 1.07160 1.22825 0.92402 0.97549 0.95107 1.23064 1.01113 0.94495 1.03386 1.23247 1.02888 1.05125 0.93795 0.95551 0.93638 0.92014 0.88296 0.92993 0.96720 0.93401 0.89368 0.96333 0.95923 0.93115 0.85176 0.87397 0.89008 0.90026 0.89991 0.89406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.36 7.51 37.16 0.28 -3.08 16 2 C -0.08 -1.80 2.17 -90.62 -0.20 -1.99 16 3 C -0.12 -2.59 8.78 37.16 0.33 -2.27 16 4 C 0.24 5.75 0.38 -132.75 -0.05 5.70 16 5 C -0.17 -3.98 7.53 37.16 0.28 -3.70 16 6 C -0.49 -12.96 7.19 -34.44 -0.25 -13.20 16 7 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 8 C 0.06 1.67 5.13 -17.82 -0.09 1.58 16 9 N -0.89 -23.98 9.33 55.43 0.52 -23.46 16 10 Si 0.89 20.93 29.54 -169.99 -5.02 15.91 16 11 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 12 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 13 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 14 N -0.65 -13.54 5.33 -94.20 -0.50 -14.04 16 15 C 0.03 0.59 3.51 -67.71 -0.24 0.35 16 16 C -0.18 -2.91 9.36 -26.73 -0.25 -3.16 16 17 C -0.21 -3.27 10.34 -26.73 -0.28 -3.55 16 18 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 19 H 0.04 0.92 5.48 -51.93 -0.28 0.63 16 20 H 0.06 1.17 4.36 -51.93 -0.23 0.94 16 21 H 0.10 2.61 5.93 -51.93 -0.31 2.31 16 22 H 0.05 1.23 7.43 -51.93 -0.39 0.85 16 23 H 0.01 0.29 8.14 -51.93 -0.42 -0.14 16 24 H 0.05 1.03 7.44 -51.93 -0.39 0.64 16 25 H 0.09 2.29 6.07 -51.93 -0.32 1.97 16 26 H 0.02 0.39 4.45 -51.93 -0.23 0.16 16 27 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 29 H 0.33 6.82 8.60 -39.29 -0.34 6.49 16 30 H 0.11 2.06 3.81 -51.93 -0.20 1.86 16 31 H 0.09 1.52 8.14 -51.93 -0.42 1.09 16 32 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.09 1.32 8.14 -51.92 -0.42 0.90 16 LS Contribution 254.10 15.07 3.83 3.83 Total: -1.00 -25.99 254.10 -6.82 -32.81 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: -5.18 Total: 8.29 kcal Atomic # 6 Polarization: -22.87 SS G_CDS: -0.47 Total: -23.33 kcal Atomic # 7 Polarization: -37.52 SS G_CDS: 0.02 Total: -37.51 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -25.99 -6.82 -32.81 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261127902.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.597 kcal (2) G-P(sol) polarization free energy of solvation -25.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.811 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds