Wall clock time and date at job start Mon Mar 30 2020 02:27:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53008 * 109.46944 * 2 1 4 4 C 1.52998 * 109.47517 * 120.00097 * 2 1 3 5 5 N 1.46498 * 109.47250 * 175.00089 * 4 2 1 6 6 C 1.36938 * 120.00065 * 274.11118 * 5 4 2 7 7 H 1.08004 * 119.99958 * 139.75142 * 6 5 4 8 8 C 1.38805 * 119.99842 * 319.75754 * 6 5 4 9 9 N 1.31615 * 120.00636 * 340.54355 * 8 6 5 10 10 Si 1.86806 * 119.99751 * 160.54157 * 8 6 5 11 11 H 1.48500 * 109.47253 * 359.97438 * 10 8 6 12 12 H 1.48503 * 109.47142 * 119.99813 * 10 8 6 13 13 H 1.48498 * 109.46969 * 239.99819 * 10 8 6 14 14 C 1.46505 * 119.99832 * 94.11388 * 5 4 2 15 15 C 1.53781 * 113.61030 * 219.13601 * 14 5 4 16 16 C 1.53956 * 87.01666 * 220.04886 * 15 14 5 17 17 C 1.53778 * 87.11236 * 25.36409 * 16 15 14 18 18 H 1.09003 * 109.46742 * 299.99492 * 1 2 3 19 19 H 1.08991 * 109.47306 * 59.99548 * 1 2 3 20 20 H 1.08998 * 109.46966 * 180.02562 * 1 2 3 21 21 H 1.09000 * 109.47227 * 240.00653 * 2 1 3 22 22 H 1.09000 * 109.46625 * 60.00284 * 3 2 1 23 23 H 1.09005 * 109.47104 * 180.02562 * 3 2 1 24 24 H 1.08994 * 109.47015 * 300.00508 * 3 2 1 25 25 H 1.08996 * 109.47187 * 55.00185 * 4 2 1 26 26 H 1.09000 * 109.47067 * 295.00313 * 4 2 1 27 27 H 0.97000 * 120.00532 * 180.02562 * 9 8 6 28 28 H 1.08990 * 112.85030 * 350.33024 * 14 5 4 29 29 H 1.09001 * 113.61915 * 334.56693 * 15 14 5 30 30 H 1.08997 * 113.61368 * 105.47733 * 15 14 5 31 31 H 1.09000 * 113.53624 * 270.81169 * 16 15 14 32 32 H 1.09005 * 113.66874 * 139.93551 * 16 15 14 33 33 H 1.09004 * 113.61378 * 220.08748 * 17 16 15 34 34 H 1.09001 * 113.69145 * 89.20150 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 3.5001 -0.8263 1.1905 6 6 4.0852 -1.8727 0.5287 7 1 4.9642 -1.7054 -0.0761 8 6 3.5486 -3.1484 0.6353 9 7 2.7444 -3.4428 1.6347 10 14 3.9677 -4.4475 -0.6400 11 1 4.8846 -3.8679 -1.6541 12 1 4.6287 -5.5990 0.0252 13 1 2.7224 -4.9081 -1.3050 14 6 4.3342 0.1881 1.8397 15 6 5.5875 0.5642 1.0319 16 6 6.3440 0.5953 2.3724 17 6 5.2851 -0.3851 2.9037 18 1 -0.3633 0.5138 0.8901 19 1 -0.3633 0.5139 -0.8899 20 1 -0.3633 -1.0277 0.0005 21 1 1.8934 -0.5137 -0.8900 22 1 1.6766 1.9563 0.8900 23 1 3.1300 1.4426 -0.0005 24 1 1.6766 1.9564 -0.8899 25 1 1.6056 -1.7198 1.2951 26 1 1.7517 -0.1584 2.1369 27 1 2.3696 -4.3343 1.7094 28 1 3.7620 1.0495 2.1841 29 1 5.9254 -0.2232 0.3581 30 1 5.5181 1.5374 0.5461 31 1 6.3222 1.5689 2.8620 32 1 7.3460 0.1693 2.3195 33 1 4.9718 -0.1772 3.9268 34 1 5.5389 -1.4330 2.7435 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261130960.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:45 Heat of formation + Delta-G solvation = 21.840496 kcal Electronic energy + Delta-G solvation = -13436.040022 eV Core-core repulsion = 11369.637701 eV Total energy + Delta-G solvation = -2066.402321 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.11696 -35.50446 -32.90107 -30.29748 -26.46257 -25.49396 -24.66145 -24.49336 -21.39119 -19.26939 -18.49402 -16.02083 -15.49201 -14.62107 -14.09974 -13.72196 -13.32347 -13.19440 -12.12009 -11.98998 -11.67805 -11.57656 -11.44075 -11.00861 -10.80391 -10.76935 -10.50335 -10.22606 -10.11895 -9.80345 -9.74039 -9.45258 -9.36176 -9.09530 -8.41493 -6.39228 -5.68520 -3.32126 3.37279 3.46317 3.48662 4.52230 5.36300 5.45039 5.61377 5.71499 5.80474 5.84827 5.86875 6.08101 6.19731 6.23996 6.37036 6.45425 6.46445 6.56366 6.62902 6.66977 6.75385 6.80496 6.99010 7.07259 7.11170 7.24263 7.39510 7.49297 7.79385 7.92375 8.63296 9.30245 9.91794 10.52191 11.28071 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.022222 B = 0.018108 C = 0.011732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.711538 B = 1545.946531 C = 2386.058350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.117 4.117 3 C -0.136 4.136 4 C 0.151 3.849 5 N -0.569 5.569 6 C -0.251 4.251 7 H 0.060 0.940 8 C 0.014 3.986 9 N -0.886 5.886 10 Si 0.891 3.109 11 H -0.276 1.276 12 H -0.291 1.291 13 H -0.289 1.289 14 C 0.157 3.843 15 C -0.152 4.152 16 C -0.146 4.146 17 C -0.152 4.152 18 H 0.044 0.956 19 H 0.039 0.961 20 H 0.049 0.951 21 H 0.066 0.934 22 H 0.038 0.962 23 H 0.060 0.940 24 H 0.032 0.968 25 H 0.090 0.910 26 H 0.020 0.980 27 H 0.252 0.748 28 H 0.067 0.933 29 H 0.086 0.914 30 H 0.044 0.956 31 H 0.063 0.937 32 H 0.053 0.947 33 H 0.042 0.958 34 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.137 6.789 -0.871 6.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.138 4.138 3 C -0.193 4.193 4 C 0.025 3.975 5 N -0.286 5.286 6 C -0.381 4.381 7 H 0.078 0.922 8 C -0.186 4.186 9 N -0.529 5.529 10 Si 0.721 3.279 11 H -0.201 1.201 12 H -0.218 1.218 13 H -0.215 1.215 14 C 0.049 3.951 15 C -0.192 4.192 16 C -0.184 4.184 17 C -0.192 4.192 18 H 0.063 0.937 19 H 0.058 0.942 20 H 0.068 0.932 21 H 0.084 0.916 22 H 0.057 0.943 23 H 0.079 0.921 24 H 0.051 0.949 25 H 0.107 0.893 26 H 0.039 0.961 27 H 0.062 0.938 28 H 0.085 0.915 29 H 0.104 0.896 30 H 0.063 0.937 31 H 0.081 0.919 32 H 0.072 0.928 33 H 0.061 0.939 34 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 0.029 6.619 -0.823 6.670 hybrid contribution 0.187 -0.750 -0.616 0.988 sum 0.215 5.869 -1.439 6.047 Atomic orbital electron populations 1.21760 0.97210 1.00874 0.99924 1.21716 0.93354 0.95971 1.02758 1.21780 1.01749 0.96705 0.99077 1.20975 0.84546 1.00430 0.91533 1.43767 1.00196 1.24588 1.60041 1.18934 1.12199 0.85658 1.21337 0.92231 1.25237 0.99954 0.96932 0.96500 1.69990 1.34872 1.19745 1.28273 0.86411 0.77831 0.81867 0.81784 1.20117 1.21754 1.21542 1.21811 0.89745 0.91746 0.91819 1.23442 0.99147 1.00096 0.96497 1.22719 0.97886 0.99100 0.98741 1.23488 0.97452 1.00060 0.98228 0.93720 0.94226 0.93152 0.91574 0.94323 0.92119 0.94900 0.89275 0.96113 0.93768 0.91503 0.89567 0.93674 0.91860 0.92790 0.93945 0.89393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 9.19 37.16 0.34 -2.07 16 2 C -0.12 -2.36 3.11 -90.62 -0.28 -2.64 16 3 C -0.14 -2.42 8.61 37.16 0.32 -2.10 16 4 C 0.15 3.53 4.78 -4.04 -0.02 3.51 16 5 N -0.57 -13.83 2.40 -164.75 -0.40 -14.22 16 6 C -0.25 -6.68 8.17 -15.06 -0.12 -6.80 16 7 H 0.06 1.60 6.22 -52.48 -0.33 1.27 16 8 C 0.01 0.38 5.02 -17.43 -0.09 0.30 16 9 N -0.89 -25.33 11.49 55.49 0.64 -24.70 16 10 Si 0.89 21.51 29.60 -169.99 -5.03 16.48 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 12 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 13 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 14 C 0.16 3.34 2.88 -67.12 -0.19 3.15 16 15 C -0.15 -2.94 7.34 -25.83 -0.19 -3.12 16 16 C -0.15 -2.56 8.09 -25.83 -0.21 -2.77 16 17 C -0.15 -3.15 7.68 -25.92 -0.20 -3.35 16 18 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 19 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 20 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 21 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 22 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 23 H 0.06 1.15 6.35 -51.93 -0.33 0.82 16 24 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.09 2.37 5.61 -51.93 -0.29 2.08 16 26 H 0.02 0.47 8.00 -51.93 -0.42 0.05 16 27 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 28 H 0.07 1.34 7.71 -51.93 -0.40 0.94 16 29 H 0.09 1.82 6.13 -51.93 -0.32 1.50 16 30 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.09 2.09 7.60 -51.93 -0.39 1.69 16 LS Contribution 267.03 15.07 4.02 4.02 Total: -1.00 -27.41 267.03 -7.24 -34.65 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: -5.84 Total: -0.34 kcal Atomic # 6 Polarization: -15.26 SS G_CDS: -0.64 Total: -15.90 kcal Atomic # 7 Polarization: -39.16 SS G_CDS: 0.24 Total: -38.92 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.03 Total: 16.48 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -27.41 -7.24 -34.65 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261130960.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.494 kcal (2) G-P(sol) polarization free energy of solvation -27.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.654 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds